Experiment: Control_ECOR27
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NOLOHH_24330 and NOLOHH_24335 are separated by 170 nucleotides NOLOHH_24335 and NOLOHH_24340 are separated by 19 nucleotides NOLOHH_24340 and NOLOHH_24345 are separated by 128 nucleotides NOLOHH_24345 and cia are separated by 21 nucleotides
NOLOHH_24330: NOLOHH_24330 - UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase, at 17,104 to 17,556
_24330
NOLOHH_24335: NOLOHH_24335 - YdeA protein, at 17,727 to 18,098
_24335
NOLOHH_24340: NOLOHH_24340 - DUF6404 domain-containing protein, at 18,118 to 18,465
_24340
NOLOHH_24345: NOLOHH_24345 - colicin transporter, at 18,594 to 18,929
_24345
NOLOHH_24350: cia - Colicin-Ia, at 18,951 to 20,831
cia
Position (kb) 17
18
19 Strain fitness (log2 ratio) -2
-1
0
1
2 at 16.727 kb on - strand at 16.736 kb on + strand at 16.834 kb on + strand at 16.834 kb on + strand at 16.885 kb on + strand at 16.885 kb on + strand at 16.885 kb on + strand at 16.886 kb on - strand at 16.886 kb on - strand at 16.886 kb on - strand at 16.886 kb on - strand at 16.930 kb on + strand at 16.930 kb on + strand at 16.962 kb on + strand at 17.042 kb on - strand at 17.065 kb on - strand at 17.108 kb on - strand at 17.141 kb on + strand at 17.142 kb on - strand at 17.190 kb on + strand, within NOLOHH_24330 at 17.190 kb on + strand, within NOLOHH_24330 at 17.206 kb on + strand, within NOLOHH_24330 at 17.206 kb on + strand, within NOLOHH_24330 at 17.206 kb on + strand, within NOLOHH_24330 at 17.207 kb on - strand, within NOLOHH_24330 at 17.207 kb on - strand, within NOLOHH_24330 at 17.207 kb on - strand, within NOLOHH_24330 at 17.207 kb on - strand, within NOLOHH_24330 at 17.207 kb on - strand, within NOLOHH_24330 at 17.207 kb on - strand, within NOLOHH_24330 at 17.207 kb on - strand, within NOLOHH_24330 at 17.208 kb on + strand, within NOLOHH_24330 at 17.208 kb on + strand, within NOLOHH_24330 at 17.209 kb on - strand, within NOLOHH_24330 at 17.209 kb on - strand, within NOLOHH_24330 at 17.209 kb on - strand, within NOLOHH_24330 at 17.209 kb on - strand, within NOLOHH_24330 at 17.209 kb on - strand, within NOLOHH_24330 at 17.209 kb on - strand, within NOLOHH_24330 at 17.209 kb on - strand, within NOLOHH_24330 at 17.210 kb on + strand, within NOLOHH_24330 at 17.211 kb on - strand, within NOLOHH_24330 at 17.263 kb on - strand, within NOLOHH_24330 at 17.334 kb on + strand, within NOLOHH_24330 at 17.365 kb on + strand, within NOLOHH_24330 at 17.365 kb on + strand, within NOLOHH_24330 at 17.365 kb on + strand, within NOLOHH_24330 at 17.380 kb on - strand, within NOLOHH_24330 at 17.380 kb on - strand, within NOLOHH_24330 at 17.432 kb on - strand, within NOLOHH_24330 at 17.478 kb on + strand, within NOLOHH_24330 at 17.481 kb on - strand, within NOLOHH_24330 at 17.481 kb on - strand, within NOLOHH_24330 at 17.481 kb on - strand, within NOLOHH_24330 at 17.503 kb on - strand, within NOLOHH_24330 at 17.503 kb on - strand, within NOLOHH_24330 at 17.503 kb on - strand, within NOLOHH_24330 at 17.503 kb on - strand, within NOLOHH_24330 at 17.506 kb on + strand, within NOLOHH_24330 at 17.506 kb on + strand, within NOLOHH_24330 at 17.507 kb on - strand, within NOLOHH_24330 at 17.507 kb on - strand, within NOLOHH_24330 at 17.507 kb on - strand, within NOLOHH_24330 at 17.507 kb on - strand, within NOLOHH_24330 at 17.519 kb on + strand at 17.520 kb on - strand at 17.520 kb on - strand at 17.539 kb on - strand at 17.572 kb on - strand at 17.632 kb on - strand at 17.636 kb on + strand at 17.636 kb on + strand at 17.636 kb on + strand at 17.637 kb on - strand at 17.637 kb on - strand at 17.637 kb on - strand at 17.830 kb on + strand, within NOLOHH_24335 at 17.909 kb on - strand, within NOLOHH_24335 at 17.913 kb on + strand, within NOLOHH_24335 at 17.914 kb on - strand, within NOLOHH_24335 at 18.076 kb on + strand at 18.119 kb on + strand at 18.120 kb on - strand at 18.211 kb on - strand, within NOLOHH_24340 at 18.214 kb on + strand, within NOLOHH_24340 at 18.214 kb on + strand, within NOLOHH_24340 at 18.214 kb on + strand, within NOLOHH_24340 at 18.214 kb on + strand, within NOLOHH_24340 at 18.215 kb on - strand, within NOLOHH_24340 at 18.215 kb on - strand, within NOLOHH_24340 at 18.215 kb on - strand, within NOLOHH_24340 at 18.215 kb on - strand, within NOLOHH_24340 at 18.215 kb on - strand, within NOLOHH_24340 at 18.215 kb on - strand, within NOLOHH_24340 at 18.215 kb on - strand, within NOLOHH_24340 at 18.216 kb on + strand, within NOLOHH_24340 at 18.217 kb on - strand, within NOLOHH_24340 at 18.217 kb on - strand, within NOLOHH_24340 at 18.217 kb on - strand, within NOLOHH_24340 at 18.217 kb on - strand, within NOLOHH_24340 at 18.217 kb on - strand, within NOLOHH_24340 at 18.220 kb on - strand, within NOLOHH_24340 at 18.257 kb on + strand, within NOLOHH_24340 at 18.262 kb on - strand, within NOLOHH_24340 at 18.295 kb on + strand, within NOLOHH_24340 at 18.371 kb on - strand, within NOLOHH_24340 at 18.371 kb on - strand, within NOLOHH_24340 at 18.395 kb on + strand, within NOLOHH_24340 at 18.395 kb on + strand, within NOLOHH_24340 at 18.395 kb on + strand, within NOLOHH_24340 at 18.396 kb on - strand, within NOLOHH_24340 at 18.396 kb on - strand, within NOLOHH_24340 at 18.396 kb on - strand, within NOLOHH_24340 at 18.396 kb on - strand, within NOLOHH_24340 at 18.396 kb on - strand, within NOLOHH_24340 at 18.489 kb on + strand at 18.489 kb on + strand at 18.489 kb on + strand at 18.490 kb on - strand at 18.490 kb on - strand at 18.490 kb on - strand at 18.538 kb on + strand at 18.539 kb on - strand at 18.557 kb on - strand at 18.618 kb on - strand at 18.621 kb on - strand at 18.650 kb on + strand, within NOLOHH_24345 at 18.650 kb on + strand, within NOLOHH_24345 at 18.651 kb on - strand, within NOLOHH_24345 at 18.658 kb on - strand, within NOLOHH_24345 at 18.889 kb on - strand, within NOLOHH_24345 at 19.044 kb on + strand at 19.045 kb on - strand at 19.045 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECOR27 remove 16,727 - -0.1 16,736 + +1.5 16,834 + -0.7 16,834 + +0.9 16,885 + -1.1 16,885 + +0.9 16,885 + +1.3 16,886 - +1.9 16,886 - -0.1 16,886 - -0.1 16,886 - -0.7 16,930 + -0.7 16,930 + -0.7 16,962 + +0.1 17,042 - +1.2 17,065 - +0.9 17,108 - -0.5 17,141 + +0.3 17,142 - -1.1 17,190 + NOLOHH_24330 0.19 -0.1 17,190 + NOLOHH_24330 0.19 +0.3 17,206 + NOLOHH_24330 0.23 -0.1 17,206 + NOLOHH_24330 0.23 +0.1 17,206 + NOLOHH_24330 0.23 -1.1 17,207 - NOLOHH_24330 0.23 -0.6 17,207 - NOLOHH_24330 0.23 +0.2 17,207 - NOLOHH_24330 0.23 +1.5 17,207 - NOLOHH_24330 0.23 +0.3 17,207 - NOLOHH_24330 0.23 +0.9 17,207 - NOLOHH_24330 0.23 +0.9 17,207 - NOLOHH_24330 0.23 -0.8 17,208 + NOLOHH_24330 0.23 -0.7 17,208 + NOLOHH_24330 0.23 -0.1 17,209 - NOLOHH_24330 0.23 +0.4 17,209 - NOLOHH_24330 0.23 +0.6 17,209 - NOLOHH_24330 0.23 +1.9 17,209 - NOLOHH_24330 0.23 -1.5 17,209 - NOLOHH_24330 0.23 -0.1 17,209 - NOLOHH_24330 0.23 +0.3 17,209 - NOLOHH_24330 0.23 -0.7 17,210 + NOLOHH_24330 0.23 +1.7 17,211 - NOLOHH_24330 0.24 -1.1 17,263 - NOLOHH_24330 0.35 +1.2 17,334 + NOLOHH_24330 0.51 +0.9 17,365 + NOLOHH_24330 0.58 -1.1 17,365 + NOLOHH_24330 0.58 -0.1 17,365 + NOLOHH_24330 0.58 +0.3 17,380 - NOLOHH_24330 0.61 +2.1 17,380 - NOLOHH_24330 0.61 -1.3 17,432 - NOLOHH_24330 0.72 +0.3 17,478 + NOLOHH_24330 0.83 -1.1 17,481 - NOLOHH_24330 0.83 +2.0 17,481 - NOLOHH_24330 0.83 +0.9 17,481 - NOLOHH_24330 0.83 -0.7 17,503 - NOLOHH_24330 0.88 -0.1 17,503 - NOLOHH_24330 0.88 -1.0 17,503 - NOLOHH_24330 0.88 +1.6 17,503 - NOLOHH_24330 0.88 +0.6 17,506 + NOLOHH_24330 0.89 +0.9 17,506 + NOLOHH_24330 0.89 -0.5 17,507 - NOLOHH_24330 0.89 -0.7 17,507 - NOLOHH_24330 0.89 +0.1 17,507 - NOLOHH_24330 0.89 +0.9 17,507 - NOLOHH_24330 0.89 +1.6 17,519 + -0.1 17,520 - -0.1 17,520 - +0.2 17,539 - +0.9 17,572 - +0.3 17,632 - -0.9 17,636 + +1.9 17,636 + -1.1 17,636 + +0.4 17,637 - -0.4 17,637 - -0.4 17,637 - -0.5 17,830 + NOLOHH_24335 0.28 -0.3 17,909 - NOLOHH_24335 0.49 -1.0 17,913 + NOLOHH_24335 0.50 -2.1 17,914 - NOLOHH_24335 0.50 +0.5 18,076 + +0.1 18,119 + +0.4 18,120 - -1.1 18,211 - NOLOHH_24340 0.27 -2.3 18,214 + NOLOHH_24340 0.28 +0.9 18,214 + NOLOHH_24340 0.28 -1.1 18,214 + NOLOHH_24340 0.28 +0.1 18,214 + NOLOHH_24340 0.28 +1.7 18,215 - NOLOHH_24340 0.28 -0.0 18,215 - NOLOHH_24340 0.28 -1.9 18,215 - NOLOHH_24340 0.28 -1.1 18,215 - NOLOHH_24340 0.28 +0.9 18,215 - NOLOHH_24340 0.28 -1.1 18,215 - NOLOHH_24340 0.28 +0.3 18,215 - NOLOHH_24340 0.28 +0.9 18,216 + NOLOHH_24340 0.28 +1.6 18,217 - NOLOHH_24340 0.28 -2.6 18,217 - NOLOHH_24340 0.28 -0.2 18,217 - NOLOHH_24340 0.28 -0.3 18,217 - NOLOHH_24340 0.28 -0.6 18,217 - NOLOHH_24340 0.28 +0.7 18,220 - NOLOHH_24340 0.29 -0.3 18,257 + NOLOHH_24340 0.40 +0.1 18,262 - NOLOHH_24340 0.41 -0.3 18,295 + NOLOHH_24340 0.51 -0.1 18,371 - NOLOHH_24340 0.73 +0.9 18,371 - NOLOHH_24340 0.73 -0.9 18,395 + NOLOHH_24340 0.80 +0.9 18,395 + NOLOHH_24340 0.80 +0.4 18,395 + NOLOHH_24340 0.80 +0.7 18,396 - NOLOHH_24340 0.80 +0.9 18,396 - NOLOHH_24340 0.80 +1.9 18,396 - NOLOHH_24340 0.80 +1.1 18,396 - NOLOHH_24340 0.80 +0.4 18,396 - NOLOHH_24340 0.80 -0.5 18,489 + -1.9 18,489 + +0.3 18,489 + +1.1 18,490 - +0.5 18,490 - +1.1 18,490 - +0.9 18,538 + -1.1 18,539 - -1.1 18,557 - +0.1 18,618 - -1.5 18,621 - +0.5 18,650 + NOLOHH_24345 0.17 -0.9 18,650 + NOLOHH_24345 0.17 -0.4 18,651 - NOLOHH_24345 0.17 +0.9 18,658 - NOLOHH_24345 0.19 -1.1 18,889 - NOLOHH_24345 0.88 +0.9 19,044 + -1.7 19,045 - -1.6 19,045 - +1.4
Or see this region's nucleotide sequence