Experiment: Control_ECOR27
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fepD and fepG overlap by 4 nucleotides fepG and fepC overlap by 4 nucleotides fepC and fepE overlap by 4 nucleotides
NOLOHH_23965: fepD - ferrienterobactin ABC transporter permease, at 4,717,659 to 4,718,663
fepD
NOLOHH_23970: fepG - iron-enterobactin ABC transporter permease, at 4,718,660 to 4,719,652
fepG
NOLOHH_23975: fepC - ferrienterobactin ABC transporter ATPase, at 4,719,649 to 4,720,464
fepC
NOLOHH_23980: fepE - LPS O-antigen length regulator, at 4,720,461 to 4,721,594
fepE
Position (kb) 4719
4720
4721 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4718.666 kb on + strand at 4718.666 kb on + strand at 4718.666 kb on + strand at 4718.667 kb on - strand at 4718.667 kb on - strand at 4718.937 kb on + strand, within fepG at 4718.937 kb on + strand, within fepG at 4718.937 kb on + strand, within fepG at 4718.937 kb on + strand, within fepG at 4719.142 kb on + strand, within fepG at 4719.142 kb on + strand, within fepG at 4719.259 kb on + strand, within fepG at 4719.259 kb on + strand, within fepG at 4719.260 kb on - strand, within fepG at 4719.260 kb on - strand, within fepG at 4719.260 kb on - strand, within fepG at 4719.260 kb on - strand, within fepG at 4719.260 kb on - strand, within fepG at 4719.261 kb on + strand, within fepG at 4719.261 kb on + strand, within fepG at 4719.261 kb on + strand, within fepG at 4719.262 kb on - strand, within fepG at 4719.434 kb on - strand, within fepG at 4719.608 kb on - strand at 4719.627 kb on + strand at 4719.706 kb on + strand at 4719.706 kb on + strand at 4719.706 kb on + strand at 4719.706 kb on + strand at 4719.707 kb on - strand at 4719.708 kb on + strand at 4719.708 kb on + strand at 4719.709 kb on - strand at 4719.731 kb on + strand, within fepC at 4719.784 kb on - strand, within fepC at 4719.806 kb on + strand, within fepC at 4719.806 kb on + strand, within fepC at 4719.876 kb on + strand, within fepC at 4720.046 kb on + strand, within fepC at 4720.140 kb on + strand, within fepC at 4720.140 kb on + strand, within fepC at 4720.193 kb on + strand, within fepC at 4720.233 kb on + strand, within fepC at 4720.260 kb on + strand, within fepC at 4720.459 kb on - strand at 4720.459 kb on - strand at 4720.459 kb on - strand at 4720.462 kb on + strand at 4720.462 kb on + strand at 4720.463 kb on - strand at 4720.463 kb on - strand at 4720.522 kb on - strand at 4720.688 kb on - strand, within fepE at 4720.827 kb on + strand, within fepE at 4721.088 kb on - strand, within fepE at 4721.089 kb on + strand, within fepE at 4721.219 kb on - strand, within fepE
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECOR27 remove 4,718,666 + -0.6 4,718,666 + +0.7 4,718,666 + -1.3 4,718,667 - +0.1 4,718,667 - -1.3 4,718,937 + fepG NOLOHH_23970 0.28 +0.7 4,718,937 + fepG NOLOHH_23970 0.28 -0.9 4,718,937 + fepG NOLOHH_23970 0.28 -1.1 4,718,937 + fepG NOLOHH_23970 0.28 +1.3 4,719,142 + fepG NOLOHH_23970 0.49 -0.9 4,719,142 + fepG NOLOHH_23970 0.49 -1.7 4,719,259 + fepG NOLOHH_23970 0.60 -1.6 4,719,259 + fepG NOLOHH_23970 0.60 +0.1 4,719,260 - fepG NOLOHH_23970 0.60 +0.7 4,719,260 - fepG NOLOHH_23970 0.60 +0.7 4,719,260 - fepG NOLOHH_23970 0.60 -0.3 4,719,260 - fepG NOLOHH_23970 0.60 -1.6 4,719,260 - fepG NOLOHH_23970 0.60 -0.5 4,719,261 + fepG NOLOHH_23970 0.61 +1.7 4,719,261 + fepG NOLOHH_23970 0.61 -0.9 4,719,261 + fepG NOLOHH_23970 0.61 +0.9 4,719,262 - fepG NOLOHH_23970 0.61 -0.9 4,719,434 - fepG NOLOHH_23970 0.78 -1.3 4,719,608 - -0.6 4,719,627 + +0.1 4,719,706 + +0.3 4,719,706 + +1.7 4,719,706 + -0.3 4,719,706 + +1.3 4,719,707 - +0.1 4,719,708 + -0.0 4,719,708 + +2.7 4,719,709 - -0.3 4,719,731 + fepC NOLOHH_23975 0.10 +0.7 4,719,784 - fepC NOLOHH_23975 0.17 -1.3 4,719,806 + fepC NOLOHH_23975 0.19 -1.3 4,719,806 + fepC NOLOHH_23975 0.19 +1.7 4,719,876 + fepC NOLOHH_23975 0.28 -1.8 4,720,046 + fepC NOLOHH_23975 0.49 +0.1 4,720,140 + fepC NOLOHH_23975 0.60 +0.7 4,720,140 + fepC NOLOHH_23975 0.60 +0.7 4,720,193 + fepC NOLOHH_23975 0.67 -0.9 4,720,233 + fepC NOLOHH_23975 0.72 +0.4 4,720,260 + fepC NOLOHH_23975 0.75 +0.7 4,720,459 - -0.3 4,720,459 - -1.6 4,720,459 - +1.5 4,720,462 + +0.3 4,720,462 + +0.9 4,720,463 - -0.3 4,720,463 - +0.5 4,720,522 - -1.1 4,720,688 - fepE NOLOHH_23980 0.20 -0.9 4,720,827 + fepE NOLOHH_23980 0.32 -2.1 4,721,088 - fepE NOLOHH_23980 0.55 -0.0 4,721,089 + fepE NOLOHH_23980 0.55 +0.1 4,721,219 - fepE NOLOHH_23980 0.67 +0.1
Or see this region's nucleotide sequence