Experiment: Control_ECOR27
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ybeU and ybeT are separated by 100 nucleotides ybeT and djlB are separated by 9 nucleotides djlB and ybeR overlap by 4 nucleotides ybeR and ybeQ are separated by 163 nucleotides
NOLOHH_23675: ybeU - Uncharacterized protein YbeU, at 4,659,707 to 4,660,414
ybeU
NOLOHH_23680: ybeT - Sel1-repeat-containing protein YbeT, at 4,660,515 to 4,661,069
ybeT
NOLOHH_23685: djlB - Uncharacterized J domain-containing protein DjlB, at 4,661,079 to 4,662,506
djlB
NOLOHH_23690: ybeR - Uncharacterized protein YbeR, at 4,662,503 to 4,663,210
ybeR
NOLOHH_23695: ybeQ - Sel1-repeat-containing protein YbeQ, at 4,663,374 to 4,664,351
ybeQ
Position (kb) 4661
4662
4663 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4660.121 kb on - strand, within ybeU at 4660.123 kb on - strand, within ybeU at 4660.200 kb on - strand, within ybeU at 4660.766 kb on + strand, within ybeT at 4660.843 kb on - strand, within ybeT at 4660.917 kb on + strand, within ybeT at 4660.918 kb on - strand, within ybeT at 4660.934 kb on + strand, within ybeT at 4660.934 kb on + strand, within ybeT at 4660.935 kb on - strand, within ybeT at 4660.935 kb on - strand, within ybeT at 4660.951 kb on - strand, within ybeT at 4660.970 kb on + strand, within ybeT at 4661.025 kb on + strand at 4661.026 kb on - strand at 4661.097 kb on + strand at 4661.250 kb on + strand, within djlB at 4661.261 kb on + strand, within djlB at 4661.265 kb on + strand, within djlB at 4661.266 kb on - strand, within djlB at 4661.367 kb on + strand, within djlB at 4661.368 kb on - strand, within djlB at 4661.368 kb on - strand, within djlB at 4661.371 kb on + strand, within djlB at 4661.372 kb on - strand, within djlB at 4661.373 kb on + strand, within djlB at 4661.374 kb on - strand, within djlB at 4661.491 kb on - strand, within djlB at 4661.491 kb on - strand, within djlB at 4661.498 kb on - strand, within djlB at 4661.498 kb on - strand, within djlB at 4661.536 kb on + strand, within djlB at 4661.537 kb on - strand, within djlB at 4661.537 kb on - strand, within djlB at 4661.605 kb on + strand, within djlB at 4661.719 kb on + strand, within djlB at 4661.741 kb on - strand, within djlB at 4661.830 kb on + strand, within djlB at 4661.900 kb on - strand, within djlB at 4661.900 kb on - strand, within djlB at 4661.900 kb on - strand, within djlB at 4662.037 kb on - strand, within djlB at 4662.112 kb on - strand, within djlB at 4662.112 kb on - strand, within djlB at 4662.132 kb on + strand, within djlB at 4662.132 kb on + strand, within djlB at 4662.132 kb on + strand, within djlB at 4662.186 kb on - strand, within djlB at 4662.186 kb on - strand, within djlB at 4662.203 kb on - strand, within djlB at 4662.303 kb on + strand, within djlB at 4662.546 kb on + strand at 4662.603 kb on - strand, within ybeR at 4662.818 kb on - strand, within ybeR at 4662.822 kb on - strand, within ybeR at 4662.952 kb on - strand, within ybeR at 4663.478 kb on + strand, within ybeQ
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECOR27 remove 4,660,121 - ybeU NOLOHH_23675 0.58 -0.7 4,660,123 - ybeU NOLOHH_23675 0.59 -1.4 4,660,200 - ybeU NOLOHH_23675 0.70 +0.5 4,660,766 + ybeT NOLOHH_23680 0.45 +0.1 4,660,843 - ybeT NOLOHH_23680 0.59 +0.7 4,660,917 + ybeT NOLOHH_23680 0.72 +1.7 4,660,918 - ybeT NOLOHH_23680 0.73 +0.7 4,660,934 + ybeT NOLOHH_23680 0.75 +0.1 4,660,934 + ybeT NOLOHH_23680 0.75 -1.9 4,660,935 - ybeT NOLOHH_23680 0.76 -0.3 4,660,935 - ybeT NOLOHH_23680 0.76 +0.7 4,660,951 - ybeT NOLOHH_23680 0.79 +0.5 4,660,970 + ybeT NOLOHH_23680 0.82 -0.3 4,661,025 + +0.4 4,661,026 - +0.3 4,661,097 + -0.6 4,661,250 + djlB NOLOHH_23685 0.12 +2.3 4,661,261 + djlB NOLOHH_23685 0.13 -0.3 4,661,265 + djlB NOLOHH_23685 0.13 -0.3 4,661,266 - djlB NOLOHH_23685 0.13 -0.3 4,661,367 + djlB NOLOHH_23685 0.20 -1.3 4,661,368 - djlB NOLOHH_23685 0.20 -1.6 4,661,368 - djlB NOLOHH_23685 0.20 -1.6 4,661,371 + djlB NOLOHH_23685 0.20 -0.3 4,661,372 - djlB NOLOHH_23685 0.21 +0.7 4,661,373 + djlB NOLOHH_23685 0.21 -0.7 4,661,374 - djlB NOLOHH_23685 0.21 -0.1 4,661,491 - djlB NOLOHH_23685 0.29 +1.7 4,661,491 - djlB NOLOHH_23685 0.29 -0.4 4,661,498 - djlB NOLOHH_23685 0.29 +0.7 4,661,498 - djlB NOLOHH_23685 0.29 +0.7 4,661,536 + djlB NOLOHH_23685 0.32 -0.3 4,661,537 - djlB NOLOHH_23685 0.32 +0.5 4,661,537 - djlB NOLOHH_23685 0.32 +0.4 4,661,605 + djlB NOLOHH_23685 0.37 -1.9 4,661,719 + djlB NOLOHH_23685 0.45 -0.9 4,661,741 - djlB NOLOHH_23685 0.46 -1.0 4,661,830 + djlB NOLOHH_23685 0.53 -0.6 4,661,900 - djlB NOLOHH_23685 0.57 -1.3 4,661,900 - djlB NOLOHH_23685 0.57 +2.3 4,661,900 - djlB NOLOHH_23685 0.57 +0.1 4,662,037 - djlB NOLOHH_23685 0.67 +0.4 4,662,112 - djlB NOLOHH_23685 0.72 -1.6 4,662,112 - djlB NOLOHH_23685 0.72 -0.6 4,662,132 + djlB NOLOHH_23685 0.74 +1.0 4,662,132 + djlB NOLOHH_23685 0.74 -0.3 4,662,132 + djlB NOLOHH_23685 0.74 -0.7 4,662,186 - djlB NOLOHH_23685 0.78 -0.3 4,662,186 - djlB NOLOHH_23685 0.78 +0.3 4,662,203 - djlB NOLOHH_23685 0.79 +2.0 4,662,303 + djlB NOLOHH_23685 0.86 +1.3 4,662,546 + +0.7 4,662,603 - ybeR NOLOHH_23690 0.14 +0.9 4,662,818 - ybeR NOLOHH_23690 0.44 +0.9 4,662,822 - ybeR NOLOHH_23690 0.45 +1.5 4,662,952 - ybeR NOLOHH_23690 0.63 -0.3 4,663,478 + ybeQ NOLOHH_23695 0.11 -2.1
Or see this region's nucleotide sequence