Experiment: Control_ECOR27
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ea10 and NOLOHH_23005 are separated by 75 nucleotides NOLOHH_23005 and NOLOHH_23010 overlap by 4 nucleotides NOLOHH_23010 and NOLOHH_23015 overlap by 4 nucleotides NOLOHH_23015 and NOLOHH_23020 overlap by 20 nucleotides NOLOHH_23020 and NOLOHH_23025 overlap by 4 nucleotides NOLOHH_23025 and NOLOHH_23030 overlap by 17 nucleotides NOLOHH_23030 and NOLOHH_23035 are separated by 342 nucleotides
NOLOHH_23000: ea10 - Protein ea10, at 4,529,969 to 4,530,337
ea10
NOLOHH_23005: NOLOHH_23005 - Regulatory protein CIII, at 4,530,413 to 4,530,583
_23005
NOLOHH_23010: NOLOHH_23010 - hypothetical protein, at 4,530,580 to 4,530,744
_23010
NOLOHH_23015: NOLOHH_23015 - hypothetical protein, at 4,530,741 to 4,530,848
_23015
NOLOHH_23020: NOLOHH_23020 - hypothetical protein, at 4,530,829 to 4,531,137
_23020
NOLOHH_23025: NOLOHH_23025 - DNA recombinase, at 4,531,134 to 4,532,036
_23025
NOLOHH_23030: NOLOHH_23030 - siphovirus Gp157 family protein, at 4,532,020 to 4,532,502
_23030
NOLOHH_23035: NOLOHH_23035 - DUF5405 domain-containing protein, at 4,532,845 to 4,533,126
_23035
Position (kb)
4531
4532
4533 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4530.183 kb on + strand, within ea10 at 4530.192 kb on - strand, within ea10 at 4530.573 kb on + strand at 4530.693 kb on - strand, within NOLOHH_23010 at 4530.850 kb on - strand at 4530.987 kb on + strand, within NOLOHH_23020 at 4530.988 kb on - strand, within NOLOHH_23020 at 4531.087 kb on + strand, within NOLOHH_23020 at 4531.087 kb on + strand, within NOLOHH_23020 at 4531.087 kb on + strand, within NOLOHH_23020 at 4531.265 kb on + strand, within NOLOHH_23025 at 4531.359 kb on + strand, within NOLOHH_23025 at 4531.359 kb on + strand, within NOLOHH_23025 at 4531.359 kb on + strand, within NOLOHH_23025 at 4531.401 kb on + strand, within NOLOHH_23025 at 4531.401 kb on + strand, within NOLOHH_23025 at 4531.402 kb on - strand, within NOLOHH_23025 at 4531.402 kb on - strand, within NOLOHH_23025 at 4531.403 kb on + strand, within NOLOHH_23025 at 4531.404 kb on - strand, within NOLOHH_23025 at 4531.411 kb on + strand, within NOLOHH_23025 at 4531.411 kb on + strand, within NOLOHH_23025 at 4531.443 kb on - strand, within NOLOHH_23025 at 4531.482 kb on + strand, within NOLOHH_23025 at 4531.483 kb on - strand, within NOLOHH_23025 at 4531.483 kb on - strand, within NOLOHH_23025 at 4531.483 kb on - strand, within NOLOHH_23025 at 4531.483 kb on - strand, within NOLOHH_23025 at 4531.483 kb on - strand, within NOLOHH_23025 at 4531.522 kb on - strand, within NOLOHH_23025 at 4531.720 kb on - strand, within NOLOHH_23025 at 4531.720 kb on - strand, within NOLOHH_23025 at 4531.778 kb on + strand, within NOLOHH_23025 at 4531.821 kb on - strand, within NOLOHH_23025 at 4531.991 kb on - strand at 4532.075 kb on + strand, within NOLOHH_23030 at 4532.514 kb on - strand at 4533.005 kb on + strand, within NOLOHH_23035 at 4533.006 kb on - strand, within NOLOHH_23035
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECOR27 remove 4,530,183 + ea10 NOLOHH_23000 0.58 +2.3 4,530,192 - ea10 NOLOHH_23000 0.60 -1.3 4,530,573 + +0.1 4,530,693 - NOLOHH_23010 0.68 +1.7 4,530,850 - -0.3 4,530,987 + NOLOHH_23020 0.51 -0.4 4,530,988 - NOLOHH_23020 0.51 -0.3 4,531,087 + NOLOHH_23020 0.83 +0.4 4,531,087 + NOLOHH_23020 0.83 +3.3 4,531,087 + NOLOHH_23020 0.83 +1.7 4,531,265 + NOLOHH_23025 0.15 +1.3 4,531,359 + NOLOHH_23025 0.25 -1.3 4,531,359 + NOLOHH_23025 0.25 +0.5 4,531,359 + NOLOHH_23025 0.25 +1.0 4,531,401 + NOLOHH_23025 0.30 -1.5 4,531,401 + NOLOHH_23025 0.30 -1.3 4,531,402 - NOLOHH_23025 0.30 -1.3 4,531,402 - NOLOHH_23025 0.30 -0.9 4,531,403 + NOLOHH_23025 0.30 +1.0 4,531,404 - NOLOHH_23025 0.30 -0.9 4,531,411 + NOLOHH_23025 0.31 -2.5 4,531,411 + NOLOHH_23025 0.31 +0.1 4,531,443 - NOLOHH_23025 0.34 -1.0 4,531,482 + NOLOHH_23025 0.39 +0.9 4,531,483 - NOLOHH_23025 0.39 -0.5 4,531,483 - NOLOHH_23025 0.39 -0.5 4,531,483 - NOLOHH_23025 0.39 -0.9 4,531,483 - NOLOHH_23025 0.39 -0.3 4,531,483 - NOLOHH_23025 0.39 -0.6 4,531,522 - NOLOHH_23025 0.43 -1.6 4,531,720 - NOLOHH_23025 0.65 -1.6 4,531,720 - NOLOHH_23025 0.65 -0.9 4,531,778 + NOLOHH_23025 0.71 -1.5 4,531,821 - NOLOHH_23025 0.76 +0.7 4,531,991 - -0.6 4,532,075 + NOLOHH_23030 0.11 -0.2 4,532,514 - -1.6 4,533,005 + NOLOHH_23035 0.57 +1.0 4,533,006 - NOLOHH_23035 0.57 -1.1
Or see this region's nucleotide sequence