Strain Fitness in Escherichia coli ECOR27 around NOLOHH_22870

Experiment: Control_ECOR27

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNOLOHH_22865 and NOLOHH_22870 are separated by 149 nucleotidesNOLOHH_22870 and NOLOHH_22875 overlap by 4 nucleotidesNOLOHH_22875 and NOLOHH_22880 overlap by 17 nucleotides NOLOHH_22865: NOLOHH_22865 - ORF11CD3 domain-containing protein, at 4,516,840 to 4,517,445 _22865 NOLOHH_22870: NOLOHH_22870 - lysis protein, at 4,517,595 to 4,518,032 _22870 NOLOHH_22875: NOLOHH_22875 - Endolysin, at 4,518,029 to 4,518,505 _22875 NOLOHH_22880: NOLOHH_22880 - phage holin, lambda family, at 4,518,489 to 4,518,812 _22880 Position (kb) 4517 4518 4519Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4516.625 kb on + strandat 4516.637 kb on - strandat 4516.661 kb on - strandat 4516.798 kb on - strandat 4516.845 kb on + strandat 4516.846 kb on - strandat 4516.846 kb on - strandat 4516.904 kb on - strand, within NOLOHH_22865at 4516.954 kb on - strand, within NOLOHH_22865at 4516.954 kb on - strand, within NOLOHH_22865at 4516.954 kb on - strand, within NOLOHH_22865at 4516.979 kb on + strand, within NOLOHH_22865at 4516.979 kb on + strand, within NOLOHH_22865at 4516.979 kb on + strand, within NOLOHH_22865at 4516.980 kb on - strand, within NOLOHH_22865at 4516.980 kb on - strand, within NOLOHH_22865at 4516.980 kb on - strand, within NOLOHH_22865at 4516.980 kb on - strand, within NOLOHH_22865at 4516.991 kb on - strand, within NOLOHH_22865at 4517.029 kb on - strand, within NOLOHH_22865at 4517.053 kb on - strand, within NOLOHH_22865at 4517.062 kb on + strand, within NOLOHH_22865at 4517.062 kb on + strand, within NOLOHH_22865at 4517.063 kb on - strand, within NOLOHH_22865at 4517.063 kb on - strand, within NOLOHH_22865at 4517.063 kb on - strand, within NOLOHH_22865at 4517.063 kb on - strand, within NOLOHH_22865at 4517.063 kb on - strand, within NOLOHH_22865at 4517.063 kb on - strand, within NOLOHH_22865at 4517.064 kb on + strand, within NOLOHH_22865at 4517.065 kb on - strand, within NOLOHH_22865at 4517.065 kb on - strand, within NOLOHH_22865at 4517.067 kb on - strand, within NOLOHH_22865at 4517.067 kb on - strand, within NOLOHH_22865at 4517.131 kb on - strand, within NOLOHH_22865at 4517.255 kb on - strand, within NOLOHH_22865at 4517.329 kb on - strand, within NOLOHH_22865at 4517.333 kb on - strand, within NOLOHH_22865at 4517.366 kb on - strand, within NOLOHH_22865at 4517.521 kb on - strandat 4517.525 kb on - strandat 4517.575 kb on - strandat 4517.616 kb on - strandat 4517.620 kb on + strandat 4517.621 kb on - strandat 4517.621 kb on - strandat 4517.621 kb on - strandat 4517.632 kb on + strandat 4517.632 kb on + strandat 4517.680 kb on + strand, within NOLOHH_22870at 4517.680 kb on + strand, within NOLOHH_22870at 4517.681 kb on - strand, within NOLOHH_22870at 4517.702 kb on + strand, within NOLOHH_22870at 4517.703 kb on - strand, within NOLOHH_22870at 4517.852 kb on - strand, within NOLOHH_22870at 4517.871 kb on + strand, within NOLOHH_22870at 4517.871 kb on + strand, within NOLOHH_22870at 4517.894 kb on + strand, within NOLOHH_22870at 4517.894 kb on + strand, within NOLOHH_22870at 4518.094 kb on + strand, within NOLOHH_22875at 4518.139 kb on + strand, within NOLOHH_22875at 4518.170 kb on - strand, within NOLOHH_22875at 4518.271 kb on + strand, within NOLOHH_22875at 4518.271 kb on + strand, within NOLOHH_22875at 4518.272 kb on - strand, within NOLOHH_22875at 4518.272 kb on - strand, within NOLOHH_22875at 4518.276 kb on + strand, within NOLOHH_22875at 4518.383 kb on + strand, within NOLOHH_22875at 4518.481 kb on + strandat 4518.482 kb on - strandat 4518.563 kb on + strand, within NOLOHH_22880at 4518.571 kb on + strand, within NOLOHH_22880at 4518.591 kb on + strand, within NOLOHH_22880at 4518.593 kb on + strand, within NOLOHH_22880at 4518.593 kb on + strand, within NOLOHH_22880at 4518.593 kb on + strand, within NOLOHH_22880at 4518.594 kb on - strand, within NOLOHH_22880at 4518.594 kb on - strand, within NOLOHH_22880at 4518.594 kb on - strand, within NOLOHH_22880at 4518.594 kb on - strand, within NOLOHH_22880at 4518.594 kb on - strand, within NOLOHH_22880at 4518.595 kb on + strand, within NOLOHH_22880at 4518.595 kb on + strand, within NOLOHH_22880at 4518.595 kb on + strand, within NOLOHH_22880at 4518.596 kb on - strand, within NOLOHH_22880at 4518.596 kb on - strand, within NOLOHH_22880at 4518.596 kb on - strand, within NOLOHH_22880at 4518.596 kb on - strand, within NOLOHH_22880at 4518.596 kb on - strand, within NOLOHH_22880at 4518.596 kb on - strand, within NOLOHH_22880at 4518.608 kb on + strand, within NOLOHH_22880at 4518.608 kb on + strand, within NOLOHH_22880at 4518.612 kb on + strand, within NOLOHH_22880at 4518.612 kb on + strand, within NOLOHH_22880at 4518.612 kb on + strand, within NOLOHH_22880at 4518.612 kb on + strand, within NOLOHH_22880at 4518.679 kb on - strand, within NOLOHH_22880at 4518.704 kb on + strand, within NOLOHH_22880at 4518.704 kb on + strand, within NOLOHH_22880at 4518.705 kb on - strand, within NOLOHH_22880at 4518.705 kb on - strand, within NOLOHH_22880at 4518.706 kb on + strand, within NOLOHH_22880at 4518.706 kb on + strand, within NOLOHH_22880at 4518.706 kb on + strand, within NOLOHH_22880at 4518.706 kb on + strand, within NOLOHH_22880at 4518.707 kb on - strand, within NOLOHH_22880at 4518.707 kb on - strand, within NOLOHH_22880at 4518.721 kb on + strand, within NOLOHH_22880at 4518.817 kb on + strandat 4518.827 kb on - strandat 4518.841 kb on + strandat 4518.845 kb on + strandat 4518.845 kb on + strandat 4518.871 kb on + strandat 4518.887 kb on + strandat 4518.896 kb on + strandat 4518.896 kb on + strandat 4518.897 kb on - strandat 4518.897 kb on - strandat 4518.992 kb on + strandat 4518.992 kb on + strandat 4518.993 kb on - strandat 4519.008 kb on - strandat 4519.008 kb on - strandat 4519.012 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECOR27
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4,516,625 + +0.1
4,516,637 - +2.0
4,516,661 - -0.0
4,516,798 - +1.7
4,516,845 + +1.7
4,516,846 - +0.9
4,516,846 - +0.5
4,516,904 - NOLOHH_22865 0.11 -0.6
4,516,954 - NOLOHH_22865 0.19 -0.6
4,516,954 - NOLOHH_22865 0.19 +0.4
4,516,954 - NOLOHH_22865 0.19 -1.2
4,516,979 + NOLOHH_22865 0.23 -0.9
4,516,979 + NOLOHH_22865 0.23 +1.7
4,516,979 + NOLOHH_22865 0.23 +0.7
4,516,980 - NOLOHH_22865 0.23 -0.6
4,516,980 - NOLOHH_22865 0.23 -0.3
4,516,980 - NOLOHH_22865 0.23 +2.7
4,516,980 - NOLOHH_22865 0.23 -0.9
4,516,991 - NOLOHH_22865 0.25 +0.0
4,517,029 - NOLOHH_22865 0.31 +2.0
4,517,053 - NOLOHH_22865 0.35 -0.3
4,517,062 + NOLOHH_22865 0.37 +1.3
4,517,062 + NOLOHH_22865 0.37 +0.7
4,517,063 - NOLOHH_22865 0.37 +0.8
4,517,063 - NOLOHH_22865 0.37 +0.7
4,517,063 - NOLOHH_22865 0.37 +1.0
4,517,063 - NOLOHH_22865 0.37 +0.9
4,517,063 - NOLOHH_22865 0.37 -0.3
4,517,063 - NOLOHH_22865 0.37 +0.7
4,517,064 + NOLOHH_22865 0.37 -0.3
4,517,065 - NOLOHH_22865 0.37 +0.1
4,517,065 - NOLOHH_22865 0.37 -1.3
4,517,067 - NOLOHH_22865 0.37 +0.1
4,517,067 - NOLOHH_22865 0.37 +0.4
4,517,131 - NOLOHH_22865 0.48 -1.2
4,517,255 - NOLOHH_22865 0.68 -0.1
4,517,329 - NOLOHH_22865 0.81 +0.4
4,517,333 - NOLOHH_22865 0.81 +0.7
4,517,366 - NOLOHH_22865 0.87 +0.6
4,517,521 - -0.3
4,517,525 - -0.9
4,517,575 - -0.4
4,517,616 - +0.7
4,517,620 + +0.7
4,517,621 - +0.9
4,517,621 - -0.9
4,517,621 - -0.2
4,517,632 + +0.7
4,517,632 + -0.1
4,517,680 + NOLOHH_22870 0.19 +0.1
4,517,680 + NOLOHH_22870 0.19 -0.6
4,517,681 - NOLOHH_22870 0.20 -0.7
4,517,702 + NOLOHH_22870 0.24 +0.1
4,517,703 - NOLOHH_22870 0.25 -1.3
4,517,852 - NOLOHH_22870 0.59 +0.5
4,517,871 + NOLOHH_22870 0.63 -1.1
4,517,871 + NOLOHH_22870 0.63 +0.1
4,517,894 + NOLOHH_22870 0.68 +0.7
4,517,894 + NOLOHH_22870 0.68 -1.6
4,518,094 + NOLOHH_22875 0.14 +0.7
4,518,139 + NOLOHH_22875 0.23 +0.3
4,518,170 - NOLOHH_22875 0.30 +0.3
4,518,271 + NOLOHH_22875 0.51 -0.9
4,518,271 + NOLOHH_22875 0.51 -1.3
4,518,272 - NOLOHH_22875 0.51 -0.3
4,518,272 - NOLOHH_22875 0.51 +1.9
4,518,276 + NOLOHH_22875 0.52 -0.4
4,518,383 + NOLOHH_22875 0.74 +0.4
4,518,481 + -0.3
4,518,482 - +1.7
4,518,563 + NOLOHH_22880 0.23 +0.1
4,518,571 + NOLOHH_22880 0.25 -0.4
4,518,591 + NOLOHH_22880 0.31 +0.7
4,518,593 + NOLOHH_22880 0.32 -0.2
4,518,593 + NOLOHH_22880 0.32 -1.7
4,518,593 + NOLOHH_22880 0.32 -0.4
4,518,594 - NOLOHH_22880 0.32 -1.3
4,518,594 - NOLOHH_22880 0.32 +0.7
4,518,594 - NOLOHH_22880 0.32 +0.7
4,518,594 - NOLOHH_22880 0.32 +0.5
4,518,594 - NOLOHH_22880 0.32 -0.3
4,518,595 + NOLOHH_22880 0.33 +0.7
4,518,595 + NOLOHH_22880 0.33 -0.5
4,518,595 + NOLOHH_22880 0.33 -2.6
4,518,596 - NOLOHH_22880 0.33 -0.3
4,518,596 - NOLOHH_22880 0.33 +2.1
4,518,596 - NOLOHH_22880 0.33 -1.0
4,518,596 - NOLOHH_22880 0.33 -1.3
4,518,596 - NOLOHH_22880 0.33 -0.9
4,518,596 - NOLOHH_22880 0.33 +0.7
4,518,608 + NOLOHH_22880 0.37 +1.0
4,518,608 + NOLOHH_22880 0.37 +1.5
4,518,612 + NOLOHH_22880 0.38 -0.3
4,518,612 + NOLOHH_22880 0.38 -0.7
4,518,612 + NOLOHH_22880 0.38 -2.3
4,518,612 + NOLOHH_22880 0.38 +1.7
4,518,679 - NOLOHH_22880 0.59 +1.7
4,518,704 + NOLOHH_22880 0.66 -1.2
4,518,704 + NOLOHH_22880 0.66 -0.5
4,518,705 - NOLOHH_22880 0.67 +0.4
4,518,705 - NOLOHH_22880 0.67 +1.7
4,518,706 + NOLOHH_22880 0.67 -0.9
4,518,706 + NOLOHH_22880 0.67 -0.9
4,518,706 + NOLOHH_22880 0.67 -0.9
4,518,706 + NOLOHH_22880 0.67 +2.3
4,518,707 - NOLOHH_22880 0.67 -1.5
4,518,707 - NOLOHH_22880 0.67 +0.0
4,518,721 + NOLOHH_22880 0.72 -1.6
4,518,817 + -0.3
4,518,827 - -3.7
4,518,841 + +0.1
4,518,845 + +2.3
4,518,845 + -1.0
4,518,871 + -0.3
4,518,887 + -0.5
4,518,896 + -1.3
4,518,896 + +1.5
4,518,897 - +0.7
4,518,897 - -1.1
4,518,992 + -0.1
4,518,992 + +0.7
4,518,993 - +0.7
4,519,008 - -0.5
4,519,008 - +1.7
4,519,012 - -1.1

Or see this region's nucleotide sequence