Strain Fitness in Escherichia coli ECOR27 around NOLOHH_22860

Experiment: Control_ECOR27

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNOLOHH_22855 and NOLOHH_22860 overlap by 4 nucleotidesNOLOHH_22860 and NOLOHH_22865 are separated by 528 nucleotides NOLOHH_22855: NOLOHH_22855 - PBSX family phage terminase large subunit, at 4,514,375 to 4,515,787 _22855 NOLOHH_22860: NOLOHH_22860 - terminase small subunit, at 4,515,784 to 4,516,311 _22860 NOLOHH_22865: NOLOHH_22865 - ORF11CD3 domain-containing protein, at 4,516,840 to 4,517,445 _22865 Position (kb) 4515 4516 4517Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4514.785 kb on - strand, within NOLOHH_22855at 4514.910 kb on + strand, within NOLOHH_22855at 4514.910 kb on + strand, within NOLOHH_22855at 4514.998 kb on + strand, within NOLOHH_22855at 4515.031 kb on + strand, within NOLOHH_22855at 4515.046 kb on + strand, within NOLOHH_22855at 4515.046 kb on + strand, within NOLOHH_22855at 4515.192 kb on + strand, within NOLOHH_22855at 4515.193 kb on - strand, within NOLOHH_22855at 4515.268 kb on - strand, within NOLOHH_22855at 4515.306 kb on - strand, within NOLOHH_22855at 4515.321 kb on + strand, within NOLOHH_22855at 4515.321 kb on + strand, within NOLOHH_22855at 4515.322 kb on - strand, within NOLOHH_22855at 4515.362 kb on + strand, within NOLOHH_22855at 4515.469 kb on + strand, within NOLOHH_22855at 4515.469 kb on + strand, within NOLOHH_22855at 4515.498 kb on + strand, within NOLOHH_22855at 4515.499 kb on - strand, within NOLOHH_22855at 4515.581 kb on + strand, within NOLOHH_22855at 4515.649 kb on + strandat 4515.649 kb on + strandat 4515.706 kb on + strandat 4515.707 kb on - strandat 4515.739 kb on - strandat 4515.739 kb on - strandat 4515.770 kb on - strandat 4515.873 kb on + strand, within NOLOHH_22860at 4515.874 kb on - strand, within NOLOHH_22860at 4515.925 kb on - strand, within NOLOHH_22860at 4516.017 kb on + strand, within NOLOHH_22860at 4516.092 kb on + strand, within NOLOHH_22860at 4516.110 kb on - strand, within NOLOHH_22860at 4516.122 kb on + strand, within NOLOHH_22860at 4516.210 kb on - strand, within NOLOHH_22860at 4516.316 kb on + strandat 4516.316 kb on + strandat 4516.325 kb on + strandat 4516.329 kb on + strandat 4516.329 kb on + strandat 4516.338 kb on + strandat 4516.339 kb on - strandat 4516.346 kb on + strandat 4516.399 kb on + strandat 4516.407 kb on + strandat 4516.407 kb on + strandat 4516.461 kb on + strandat 4516.591 kb on + strandat 4516.625 kb on + strandat 4516.637 kb on - strandat 4516.661 kb on - strandat 4516.798 kb on - strandat 4516.845 kb on + strandat 4516.846 kb on - strandat 4516.846 kb on - strandat 4516.904 kb on - strand, within NOLOHH_22865at 4516.954 kb on - strand, within NOLOHH_22865at 4516.954 kb on - strand, within NOLOHH_22865at 4516.954 kb on - strand, within NOLOHH_22865at 4516.979 kb on + strand, within NOLOHH_22865at 4516.979 kb on + strand, within NOLOHH_22865at 4516.979 kb on + strand, within NOLOHH_22865at 4516.980 kb on - strand, within NOLOHH_22865at 4516.980 kb on - strand, within NOLOHH_22865at 4516.980 kb on - strand, within NOLOHH_22865at 4516.980 kb on - strand, within NOLOHH_22865at 4516.991 kb on - strand, within NOLOHH_22865at 4517.029 kb on - strand, within NOLOHH_22865at 4517.053 kb on - strand, within NOLOHH_22865at 4517.062 kb on + strand, within NOLOHH_22865at 4517.062 kb on + strand, within NOLOHH_22865at 4517.063 kb on - strand, within NOLOHH_22865at 4517.063 kb on - strand, within NOLOHH_22865at 4517.063 kb on - strand, within NOLOHH_22865at 4517.063 kb on - strand, within NOLOHH_22865at 4517.063 kb on - strand, within NOLOHH_22865at 4517.063 kb on - strand, within NOLOHH_22865at 4517.064 kb on + strand, within NOLOHH_22865at 4517.065 kb on - strand, within NOLOHH_22865at 4517.065 kb on - strand, within NOLOHH_22865at 4517.067 kb on - strand, within NOLOHH_22865at 4517.067 kb on - strand, within NOLOHH_22865at 4517.131 kb on - strand, within NOLOHH_22865at 4517.255 kb on - strand, within NOLOHH_22865

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECOR27
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4,514,785 - NOLOHH_22855 0.29 -0.9
4,514,910 + NOLOHH_22855 0.38 -0.3
4,514,910 + NOLOHH_22855 0.38 -0.9
4,514,998 + NOLOHH_22855 0.44 +0.1
4,515,031 + NOLOHH_22855 0.46 +2.3
4,515,046 + NOLOHH_22855 0.47 +1.7
4,515,046 + NOLOHH_22855 0.47 -0.4
4,515,192 + NOLOHH_22855 0.58 +0.7
4,515,193 - NOLOHH_22855 0.58 -1.6
4,515,268 - NOLOHH_22855 0.63 -1.9
4,515,306 - NOLOHH_22855 0.66 +1.1
4,515,321 + NOLOHH_22855 0.67 +0.1
4,515,321 + NOLOHH_22855 0.67 -0.5
4,515,322 - NOLOHH_22855 0.67 -1.9
4,515,362 + NOLOHH_22855 0.70 -0.9
4,515,469 + NOLOHH_22855 0.77 +3.1
4,515,469 + NOLOHH_22855 0.77 +0.7
4,515,498 + NOLOHH_22855 0.79 +0.7
4,515,499 - NOLOHH_22855 0.80 +0.7
4,515,581 + NOLOHH_22855 0.85 +0.7
4,515,649 + +0.1
4,515,649 + -0.7
4,515,706 + +0.7
4,515,707 - -1.9
4,515,739 - +0.7
4,515,739 - -0.1
4,515,770 - -0.3
4,515,873 + NOLOHH_22860 0.17 +2.7
4,515,874 - NOLOHH_22860 0.17 -2.7
4,515,925 - NOLOHH_22860 0.27 -0.9
4,516,017 + NOLOHH_22860 0.44 -1.3
4,516,092 + NOLOHH_22860 0.58 -1.0
4,516,110 - NOLOHH_22860 0.62 -0.5
4,516,122 + NOLOHH_22860 0.64 -0.5
4,516,210 - NOLOHH_22860 0.81 -0.6
4,516,316 + -2.3
4,516,316 + +0.1
4,516,325 + +0.4
4,516,329 + +0.2
4,516,329 + +0.7
4,516,338 + -0.5
4,516,339 - +0.7
4,516,346 + +0.1
4,516,399 + +0.5
4,516,407 + -0.3
4,516,407 + -1.1
4,516,461 + +1.1
4,516,591 + -0.3
4,516,625 + +0.1
4,516,637 - +2.0
4,516,661 - -0.0
4,516,798 - +1.7
4,516,845 + +1.7
4,516,846 - +0.9
4,516,846 - +0.5
4,516,904 - NOLOHH_22865 0.11 -0.6
4,516,954 - NOLOHH_22865 0.19 -0.6
4,516,954 - NOLOHH_22865 0.19 +0.4
4,516,954 - NOLOHH_22865 0.19 -1.2
4,516,979 + NOLOHH_22865 0.23 -0.9
4,516,979 + NOLOHH_22865 0.23 +1.7
4,516,979 + NOLOHH_22865 0.23 +0.7
4,516,980 - NOLOHH_22865 0.23 -0.6
4,516,980 - NOLOHH_22865 0.23 -0.3
4,516,980 - NOLOHH_22865 0.23 +2.7
4,516,980 - NOLOHH_22865 0.23 -0.9
4,516,991 - NOLOHH_22865 0.25 +0.0
4,517,029 - NOLOHH_22865 0.31 +2.0
4,517,053 - NOLOHH_22865 0.35 -0.3
4,517,062 + NOLOHH_22865 0.37 +1.3
4,517,062 + NOLOHH_22865 0.37 +0.7
4,517,063 - NOLOHH_22865 0.37 +0.8
4,517,063 - NOLOHH_22865 0.37 +0.7
4,517,063 - NOLOHH_22865 0.37 +1.0
4,517,063 - NOLOHH_22865 0.37 +0.9
4,517,063 - NOLOHH_22865 0.37 -0.3
4,517,063 - NOLOHH_22865 0.37 +0.7
4,517,064 + NOLOHH_22865 0.37 -0.3
4,517,065 - NOLOHH_22865 0.37 +0.1
4,517,065 - NOLOHH_22865 0.37 -1.3
4,517,067 - NOLOHH_22865 0.37 +0.1
4,517,067 - NOLOHH_22865 0.37 +0.4
4,517,131 - NOLOHH_22865 0.48 -1.2
4,517,255 - NOLOHH_22865 0.68 -0.1

Or see this region's nucleotide sequence