Strain Fitness in Escherichia coli ECOR27 around NOLOHH_22115

Experiment: Control_ECOR27

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntdmsC and dmsB are separated by 1 nucleotidesdmsB and dmsA are separated by 10 nucleotidesdmsA and serS are separated by 238 nucleotides NOLOHH_22105: dmsC - dimethyl sulfoxide reductase anchor subunit DmsC, at 4,358,077 to 4,358,940 dmsC NOLOHH_22110: dmsB - dimethylsulfoxide reductase subunit B, at 4,358,942 to 4,359,559 dmsB NOLOHH_22115: dmsA - dimethylsulfoxide reductase subunit A, at 4,359,570 to 4,362,014 dmsA NOLOHH_22125: serS - serine--tRNA ligase, at 4,362,253 to 4,363,545 serS Position (kb) 4359 4360 4361 4362 4363Strain fitness (log2 ratio) -2 -1 0 1 2at 4358.596 kb on - strand, within dmsCat 4358.705 kb on - strand, within dmsCat 4358.722 kb on - strand, within dmsCat 4359.194 kb on - strand, within dmsBat 4359.194 kb on - strand, within dmsBat 4359.242 kb on - strand, within dmsBat 4359.332 kb on - strand, within dmsBat 4359.332 kb on - strand, within dmsBat 4359.335 kb on - strand, within dmsBat 4359.375 kb on + strand, within dmsBat 4359.376 kb on - strand, within dmsBat 4359.376 kb on - strand, within dmsBat 4359.441 kb on + strand, within dmsBat 4359.442 kb on - strand, within dmsBat 4359.442 kb on - strand, within dmsBat 4359.442 kb on - strand, within dmsBat 4359.488 kb on - strand, within dmsBat 4359.600 kb on - strandat 4359.695 kb on - strandat 4359.908 kb on + strand, within dmsAat 4359.908 kb on + strand, within dmsAat 4359.909 kb on - strand, within dmsAat 4359.982 kb on + strand, within dmsAat 4360.316 kb on - strand, within dmsAat 4360.676 kb on + strand, within dmsAat 4360.676 kb on + strand, within dmsAat 4360.742 kb on - strand, within dmsAat 4360.815 kb on - strand, within dmsAat 4361.254 kb on + strand, within dmsAat 4361.345 kb on + strand, within dmsAat 4361.369 kb on + strand, within dmsAat 4361.369 kb on + strand, within dmsAat 4361.370 kb on - strand, within dmsAat 4361.372 kb on - strand, within dmsAat 4361.372 kb on - strand, within dmsAat 4361.516 kb on - strand, within dmsAat 4361.524 kb on + strand, within dmsAat 4361.765 kb on - strand, within dmsAat 4361.792 kb on + strandat 4361.792 kb on + strandat 4361.793 kb on - strandat 4361.825 kb on + strandat 4362.068 kb on + strandat 4362.069 kb on - strandat 4362.078 kb on + strandat 4362.079 kb on - strandat 4362.081 kb on - strandat 4362.156 kb on + strandat 4362.162 kb on + strandat 4362.169 kb on - strandat 4362.179 kb on + strandat 4362.264 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECOR27
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4,358,596 - dmsC NOLOHH_22105 0.60 -2.5
4,358,705 - dmsC NOLOHH_22105 0.73 -0.9
4,358,722 - dmsC NOLOHH_22105 0.75 -1.7
4,359,194 - dmsB NOLOHH_22110 0.41 +0.7
4,359,194 - dmsB NOLOHH_22110 0.41 -0.3
4,359,242 - dmsB NOLOHH_22110 0.49 -0.3
4,359,332 - dmsB NOLOHH_22110 0.63 +1.7
4,359,332 - dmsB NOLOHH_22110 0.63 -1.3
4,359,335 - dmsB NOLOHH_22110 0.64 +0.1
4,359,375 + dmsB NOLOHH_22110 0.70 +2.2
4,359,376 - dmsB NOLOHH_22110 0.70 +1.7
4,359,376 - dmsB NOLOHH_22110 0.70 +0.7
4,359,441 + dmsB NOLOHH_22110 0.81 -0.9
4,359,442 - dmsB NOLOHH_22110 0.81 +1.2
4,359,442 - dmsB NOLOHH_22110 0.81 +0.7
4,359,442 - dmsB NOLOHH_22110 0.81 -0.9
4,359,488 - dmsB NOLOHH_22110 0.88 +1.1
4,359,600 - +1.0
4,359,695 - -0.5
4,359,908 + dmsA NOLOHH_22115 0.14 +1.2
4,359,908 + dmsA NOLOHH_22115 0.14 -0.1
4,359,909 - dmsA NOLOHH_22115 0.14 +1.4
4,359,982 + dmsA NOLOHH_22115 0.17 +1.7
4,360,316 - dmsA NOLOHH_22115 0.31 -0.6
4,360,676 + dmsA NOLOHH_22115 0.45 +0.7
4,360,676 + dmsA NOLOHH_22115 0.45 -0.9
4,360,742 - dmsA NOLOHH_22115 0.48 -1.3
4,360,815 - dmsA NOLOHH_22115 0.51 +0.7
4,361,254 + dmsA NOLOHH_22115 0.69 +0.7
4,361,345 + dmsA NOLOHH_22115 0.73 +1.7
4,361,369 + dmsA NOLOHH_22115 0.74 +0.7
4,361,369 + dmsA NOLOHH_22115 0.74 -1.7
4,361,370 - dmsA NOLOHH_22115 0.74 -0.7
4,361,372 - dmsA NOLOHH_22115 0.74 +0.7
4,361,372 - dmsA NOLOHH_22115 0.74 +1.7
4,361,516 - dmsA NOLOHH_22115 0.80 +1.7
4,361,524 + dmsA NOLOHH_22115 0.80 -0.7
4,361,765 - dmsA NOLOHH_22115 0.90 +0.2
4,361,792 + +0.1
4,361,792 + +0.7
4,361,793 - -1.7
4,361,825 + +0.2
4,362,068 + +0.7
4,362,069 - +0.9
4,362,078 + +1.1
4,362,079 - -0.3
4,362,081 - -1.9
4,362,156 + +1.7
4,362,162 + +0.2
4,362,169 - -0.3
4,362,179 + -0.7
4,362,264 - -0.3

Or see this region's nucleotide sequence