Experiment: Control_ECOR27
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dmsC and dmsB are separated by 1 nucleotides dmsB and dmsA are separated by 10 nucleotides dmsA and serS are separated by 238 nucleotides
NOLOHH_22105: dmsC - dimethyl sulfoxide reductase anchor subunit DmsC, at 4,358,077 to 4,358,940
dmsC
NOLOHH_22110: dmsB - dimethylsulfoxide reductase subunit B, at 4,358,942 to 4,359,559
dmsB
NOLOHH_22115: dmsA - dimethylsulfoxide reductase subunit A, at 4,359,570 to 4,362,014
dmsA
NOLOHH_22125: serS - serine--tRNA ligase, at 4,362,253 to 4,363,545
serS
Position (kb)
4359
4360
4361
4362
4363 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4358.596 kb on - strand, within dmsC at 4358.705 kb on - strand, within dmsC at 4358.722 kb on - strand, within dmsC at 4359.194 kb on - strand, within dmsB at 4359.194 kb on - strand, within dmsB at 4359.242 kb on - strand, within dmsB at 4359.332 kb on - strand, within dmsB at 4359.332 kb on - strand, within dmsB at 4359.335 kb on - strand, within dmsB at 4359.375 kb on + strand, within dmsB at 4359.376 kb on - strand, within dmsB at 4359.376 kb on - strand, within dmsB at 4359.441 kb on + strand, within dmsB at 4359.442 kb on - strand, within dmsB at 4359.442 kb on - strand, within dmsB at 4359.442 kb on - strand, within dmsB at 4359.488 kb on - strand, within dmsB at 4359.600 kb on - strand at 4359.695 kb on - strand at 4359.908 kb on + strand, within dmsA at 4359.908 kb on + strand, within dmsA at 4359.909 kb on - strand, within dmsA at 4359.982 kb on + strand, within dmsA at 4360.316 kb on - strand, within dmsA at 4360.676 kb on + strand, within dmsA at 4360.676 kb on + strand, within dmsA at 4360.742 kb on - strand, within dmsA at 4360.815 kb on - strand, within dmsA at 4361.254 kb on + strand, within dmsA at 4361.345 kb on + strand, within dmsA at 4361.369 kb on + strand, within dmsA at 4361.369 kb on + strand, within dmsA at 4361.370 kb on - strand, within dmsA at 4361.372 kb on - strand, within dmsA at 4361.372 kb on - strand, within dmsA at 4361.516 kb on - strand, within dmsA at 4361.524 kb on + strand, within dmsA at 4361.765 kb on - strand, within dmsA at 4361.792 kb on + strand at 4361.792 kb on + strand at 4361.793 kb on - strand at 4361.825 kb on + strand at 4362.068 kb on + strand at 4362.069 kb on - strand at 4362.078 kb on + strand at 4362.079 kb on - strand at 4362.081 kb on - strand at 4362.156 kb on + strand at 4362.162 kb on + strand at 4362.169 kb on - strand at 4362.179 kb on + strand at 4362.264 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECOR27 remove 4,358,596 - dmsC NOLOHH_22105 0.60 -2.5 4,358,705 - dmsC NOLOHH_22105 0.73 -0.9 4,358,722 - dmsC NOLOHH_22105 0.75 -1.7 4,359,194 - dmsB NOLOHH_22110 0.41 +0.7 4,359,194 - dmsB NOLOHH_22110 0.41 -0.3 4,359,242 - dmsB NOLOHH_22110 0.49 -0.3 4,359,332 - dmsB NOLOHH_22110 0.63 +1.7 4,359,332 - dmsB NOLOHH_22110 0.63 -1.3 4,359,335 - dmsB NOLOHH_22110 0.64 +0.1 4,359,375 + dmsB NOLOHH_22110 0.70 +2.2 4,359,376 - dmsB NOLOHH_22110 0.70 +1.7 4,359,376 - dmsB NOLOHH_22110 0.70 +0.7 4,359,441 + dmsB NOLOHH_22110 0.81 -0.9 4,359,442 - dmsB NOLOHH_22110 0.81 +1.2 4,359,442 - dmsB NOLOHH_22110 0.81 +0.7 4,359,442 - dmsB NOLOHH_22110 0.81 -0.9 4,359,488 - dmsB NOLOHH_22110 0.88 +1.1 4,359,600 - +1.0 4,359,695 - -0.5 4,359,908 + dmsA NOLOHH_22115 0.14 +1.2 4,359,908 + dmsA NOLOHH_22115 0.14 -0.1 4,359,909 - dmsA NOLOHH_22115 0.14 +1.4 4,359,982 + dmsA NOLOHH_22115 0.17 +1.7 4,360,316 - dmsA NOLOHH_22115 0.31 -0.6 4,360,676 + dmsA NOLOHH_22115 0.45 +0.7 4,360,676 + dmsA NOLOHH_22115 0.45 -0.9 4,360,742 - dmsA NOLOHH_22115 0.48 -1.3 4,360,815 - dmsA NOLOHH_22115 0.51 +0.7 4,361,254 + dmsA NOLOHH_22115 0.69 +0.7 4,361,345 + dmsA NOLOHH_22115 0.73 +1.7 4,361,369 + dmsA NOLOHH_22115 0.74 +0.7 4,361,369 + dmsA NOLOHH_22115 0.74 -1.7 4,361,370 - dmsA NOLOHH_22115 0.74 -0.7 4,361,372 - dmsA NOLOHH_22115 0.74 +0.7 4,361,372 - dmsA NOLOHH_22115 0.74 +1.7 4,361,516 - dmsA NOLOHH_22115 0.80 +1.7 4,361,524 + dmsA NOLOHH_22115 0.80 -0.7 4,361,765 - dmsA NOLOHH_22115 0.90 +0.2 4,361,792 + +0.1 4,361,792 + +0.7 4,361,793 - -1.7 4,361,825 + +0.2 4,362,068 + +0.7 4,362,069 - +0.9 4,362,078 + +1.1 4,362,079 - -0.3 4,362,081 - -1.9 4,362,156 + +1.7 4,362,162 + +0.2 4,362,169 - -0.3 4,362,179 + -0.7 4,362,264 - -0.3
Or see this region's nucleotide sequence