Experiment: Control_ECOR27
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt gfcE and etp overlap by 13 nucleotides etp and etk are separated by 19 nucleotides
NOLOHH_21655: gfcE - Putative polysaccharide export protein GfcE, at 4,257,003 to 4,258,142
gfcE
NOLOHH_21660: etp - protein-tyrosine-phosphatase Etp, at 4,258,130 to 4,258,576
etp
NOLOHH_21665: etk - tyrosine-protein kinase, at 4,258,596 to 4,260,776
etk
Position (kb) 4258
4259 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4257.155 kb on + strand, within gfcE at 4257.155 kb on + strand, within gfcE at 4257.159 kb on + strand, within gfcE at 4257.206 kb on + strand, within gfcE at 4257.249 kb on + strand, within gfcE at 4257.310 kb on + strand, within gfcE at 4257.335 kb on + strand, within gfcE at 4257.390 kb on + strand, within gfcE at 4257.433 kb on + strand, within gfcE at 4257.522 kb on + strand, within gfcE at 4257.569 kb on + strand, within gfcE at 4257.742 kb on + strand, within gfcE at 4257.742 kb on + strand, within gfcE at 4257.948 kb on + strand, within gfcE at 4257.948 kb on + strand, within gfcE at 4258.023 kb on + strand, within gfcE at 4258.023 kb on + strand, within gfcE at 4258.367 kb on + strand, within etp at 4258.399 kb on + strand, within etp at 4258.399 kb on + strand, within etp at 4258.523 kb on + strand, within etp at 4258.528 kb on + strand, within etp at 4258.528 kb on + strand, within etp at 4258.694 kb on + strand at 4258.694 kb on + strand at 4258.772 kb on + strand at 4258.772 kb on + strand at 4258.829 kb on + strand, within etk at 4258.930 kb on + strand, within etk at 4258.930 kb on + strand, within etk at 4258.944 kb on + strand, within etk at 4259.021 kb on + strand, within etk at 4259.021 kb on + strand, within etk at 4259.021 kb on + strand, within etk at 4259.021 kb on + strand, within etk at 4259.082 kb on + strand, within etk at 4259.083 kb on + strand, within etk at 4259.084 kb on + strand, within etk at 4259.084 kb on + strand, within etk at 4259.084 kb on + strand, within etk at 4259.084 kb on + strand, within etk at 4259.084 kb on + strand, within etk at 4259.084 kb on + strand, within etk at 4259.084 kb on + strand, within etk at 4259.117 kb on + strand, within etk at 4259.117 kb on + strand, within etk at 4259.171 kb on + strand, within etk at 4259.267 kb on + strand, within etk at 4259.291 kb on + strand, within etk at 4259.321 kb on + strand, within etk at 4259.352 kb on + strand, within etk at 4259.352 kb on + strand, within etk at 4259.352 kb on + strand, within etk
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECOR27 remove 4,257,155 + gfcE NOLOHH_21655 0.13 +0.4 4,257,155 + gfcE NOLOHH_21655 0.13 -1.3 4,257,159 + gfcE NOLOHH_21655 0.14 -1.4 4,257,206 + gfcE NOLOHH_21655 0.18 +1.1 4,257,249 + gfcE NOLOHH_21655 0.22 +0.6 4,257,310 + gfcE NOLOHH_21655 0.27 +0.1 4,257,335 + gfcE NOLOHH_21655 0.29 -0.8 4,257,390 + gfcE NOLOHH_21655 0.34 -0.9 4,257,433 + gfcE NOLOHH_21655 0.38 +1.0 4,257,522 + gfcE NOLOHH_21655 0.46 +1.6 4,257,569 + gfcE NOLOHH_21655 0.50 -0.4 4,257,742 + gfcE NOLOHH_21655 0.65 -0.7 4,257,742 + gfcE NOLOHH_21655 0.65 +0.4 4,257,948 + gfcE NOLOHH_21655 0.83 +0.6 4,257,948 + gfcE NOLOHH_21655 0.83 +1.2 4,258,023 + gfcE NOLOHH_21655 0.89 +0.4 4,258,023 + gfcE NOLOHH_21655 0.89 -1.4 4,258,367 + etp NOLOHH_21660 0.53 -1.2 4,258,399 + etp NOLOHH_21660 0.60 -0.9 4,258,399 + etp NOLOHH_21660 0.60 -0.2 4,258,523 + etp NOLOHH_21660 0.88 -0.4 4,258,528 + etp NOLOHH_21660 0.89 -1.2 4,258,528 + etp NOLOHH_21660 0.89 -1.2 4,258,694 + -0.2 4,258,694 + +0.6 4,258,772 + +0.2 4,258,772 + +0.6 4,258,829 + etk NOLOHH_21665 0.11 +0.6 4,258,930 + etk NOLOHH_21665 0.15 -0.1 4,258,930 + etk NOLOHH_21665 0.15 +1.6 4,258,944 + etk NOLOHH_21665 0.16 -2.5 4,259,021 + etk NOLOHH_21665 0.19 +0.6 4,259,021 + etk NOLOHH_21665 0.19 -0.2 4,259,021 + etk NOLOHH_21665 0.19 -2.2 4,259,021 + etk NOLOHH_21665 0.19 -1.5 4,259,082 + etk NOLOHH_21665 0.22 +0.2 4,259,083 + etk NOLOHH_21665 0.22 +0.4 4,259,084 + etk NOLOHH_21665 0.22 +0.6 4,259,084 + etk NOLOHH_21665 0.22 +0.5 4,259,084 + etk NOLOHH_21665 0.22 +0.9 4,259,084 + etk NOLOHH_21665 0.22 +1.2 4,259,084 + etk NOLOHH_21665 0.22 -0.4 4,259,084 + etk NOLOHH_21665 0.22 +2.6 4,259,084 + etk NOLOHH_21665 0.22 -0.4 4,259,117 + etk NOLOHH_21665 0.24 -0.1 4,259,117 + etk NOLOHH_21665 0.24 -0.4 4,259,171 + etk NOLOHH_21665 0.26 +0.3 4,259,267 + etk NOLOHH_21665 0.31 -1.1 4,259,291 + etk NOLOHH_21665 0.32 -0.4 4,259,321 + etk NOLOHH_21665 0.33 +0.6 4,259,352 + etk NOLOHH_21665 0.35 +1.2 4,259,352 + etk NOLOHH_21665 0.35 -0.4 4,259,352 + etk NOLOHH_21665 0.35 -0.5
Or see this region's nucleotide sequence