Experiment: Control_ECOR27
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt cgsG and ycdZ are separated by 63 nucleotides ycdZ and ycdY are separated by 71 nucleotides ycdY and ycdX are separated by 23 nucleotides ycdX and ghrA are separated by 54 nucleotides
NOLOHH_21390: cgsG - curli production assembly/transport protein CsgG, at 4,202,368 to 4,203,201
cgsG
NOLOHH_21395: ycdZ - Inner membrane protein YcdZ, at 4,203,265 to 4,203,786
ycdZ
NOLOHH_21400: ycdY - molecular chaperone YcdY, at 4,203,858 to 4,204,412
ycdY
NOLOHH_21405: ycdX - zinc-binding phosphatase, at 4,204,436 to 4,205,173
ycdX
NOLOHH_21410: ghrA - glyoxylate/hydroxypyruvate reductase GhrA, at 4,205,228 to 4,206,166
ghrA
Position (kb) 4203
4204
4205 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4202.954 kb on + strand, within cgsG at 4202.954 kb on + strand, within cgsG at 4202.962 kb on + strand, within cgsG at 4203.105 kb on + strand, within cgsG at 4203.177 kb on + strand at 4203.177 kb on + strand at 4203.222 kb on - strand at 4203.359 kb on - strand, within ycdZ at 4203.359 kb on - strand, within ycdZ at 4203.478 kb on - strand, within ycdZ at 4203.478 kb on - strand, within ycdZ at 4203.513 kb on - strand, within ycdZ at 4203.513 kb on - strand, within ycdZ at 4203.583 kb on - strand, within ycdZ at 4203.677 kb on - strand, within ycdZ at 4203.677 kb on - strand, within ycdZ at 4203.739 kb on - strand at 4203.748 kb on + strand at 4203.748 kb on + strand at 4203.749 kb on - strand at 4203.749 kb on - strand at 4204.176 kb on - strand, within ycdY at 4204.223 kb on - strand, within ycdY at 4204.223 kb on - strand, within ycdY at 4204.245 kb on - strand, within ycdY at 4204.245 kb on - strand, within ycdY at 4204.273 kb on - strand, within ycdY at 4204.398 kb on - strand at 4204.398 kb on - strand at 4204.418 kb on + strand at 4204.431 kb on - strand at 4204.431 kb on - strand at 4204.434 kb on - strand at 4204.438 kb on - strand at 4204.583 kb on - strand, within ycdX at 4204.676 kb on - strand, within ycdX at 4204.686 kb on - strand, within ycdX at 4204.791 kb on - strand, within ycdX at 4204.792 kb on + strand, within ycdX at 4204.793 kb on - strand, within ycdX at 4204.793 kb on - strand, within ycdX at 4205.003 kb on - strand, within ycdX at 4205.003 kb on - strand, within ycdX at 4205.003 kb on - strand, within ycdX at 4205.012 kb on - strand, within ycdX at 4205.012 kb on - strand, within ycdX at 4205.078 kb on - strand, within ycdX at 4205.078 kb on - strand, within ycdX at 4205.106 kb on + strand at 4205.107 kb on - strand at 4205.122 kb on + strand at 4205.122 kb on + strand at 4205.123 kb on - strand at 4205.123 kb on - strand at 4205.174 kb on - strand at 4205.174 kb on - strand at 4205.174 kb on - strand at 4205.174 kb on - strand at 4205.174 kb on - strand at 4205.174 kb on - strand at 4205.174 kb on - strand at 4205.206 kb on + strand at 4205.226 kb on + strand at 4205.227 kb on - strand at 4205.408 kb on - strand, within ghrA at 4205.408 kb on - strand, within ghrA
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECOR27 remove 4,202,954 + cgsG NOLOHH_21390 0.70 +2.2 4,202,954 + cgsG NOLOHH_21390 0.70 +0.6 4,202,962 + cgsG NOLOHH_21390 0.71 +0.8 4,203,105 + cgsG NOLOHH_21390 0.88 +2.9 4,203,177 + +0.8 4,203,177 + +0.3 4,203,222 - +0.1 4,203,359 - ycdZ NOLOHH_21395 0.18 +0.9 4,203,359 - ycdZ NOLOHH_21395 0.18 +1.6 4,203,478 - ycdZ NOLOHH_21395 0.41 -2.0 4,203,478 - ycdZ NOLOHH_21395 0.41 -1.3 4,203,513 - ycdZ NOLOHH_21395 0.48 -2.8 4,203,513 - ycdZ NOLOHH_21395 0.48 +0.6 4,203,583 - ycdZ NOLOHH_21395 0.61 -0.4 4,203,677 - ycdZ NOLOHH_21395 0.79 +2.2 4,203,677 - ycdZ NOLOHH_21395 0.79 +0.0 4,203,739 - -0.7 4,203,748 + -1.0 4,203,748 + +2.4 4,203,749 - -0.2 4,203,749 - -0.4 4,204,176 - ycdY NOLOHH_21400 0.57 -0.4 4,204,223 - ycdY NOLOHH_21400 0.66 -0.7 4,204,223 - ycdY NOLOHH_21400 0.66 -0.2 4,204,245 - ycdY NOLOHH_21400 0.70 -1.4 4,204,245 - ycdY NOLOHH_21400 0.70 -1.0 4,204,273 - ycdY NOLOHH_21400 0.75 -0.7 4,204,398 - +0.6 4,204,398 - -0.1 4,204,418 + -1.4 4,204,431 - -1.5 4,204,431 - -1.4 4,204,434 - -0.7 4,204,438 - +0.3 4,204,583 - ycdX NOLOHH_21405 0.20 +0.6 4,204,676 - ycdX NOLOHH_21405 0.33 +0.2 4,204,686 - ycdX NOLOHH_21405 0.34 -0.6 4,204,791 - ycdX NOLOHH_21405 0.48 -2.0 4,204,792 + ycdX NOLOHH_21405 0.48 -0.7 4,204,793 - ycdX NOLOHH_21405 0.48 +1.6 4,204,793 - ycdX NOLOHH_21405 0.48 -1.4 4,205,003 - ycdX NOLOHH_21405 0.77 -2.0 4,205,003 - ycdX NOLOHH_21405 0.77 +0.3 4,205,003 - ycdX NOLOHH_21405 0.77 +0.6 4,205,012 - ycdX NOLOHH_21405 0.78 +0.0 4,205,012 - ycdX NOLOHH_21405 0.78 +0.4 4,205,078 - ycdX NOLOHH_21405 0.87 +0.1 4,205,078 - ycdX NOLOHH_21405 0.87 +1.6 4,205,106 + +0.0 4,205,107 - +0.6 4,205,122 + +3.2 4,205,122 + -0.0 4,205,123 - -0.4 4,205,123 - -0.4 4,205,174 - +1.6 4,205,174 - -2.1 4,205,174 - +0.9 4,205,174 - +0.0 4,205,174 - -1.0 4,205,174 - +0.6 4,205,174 - +1.2 4,205,206 + +0.6 4,205,226 + -0.4 4,205,227 - -0.6 4,205,408 - ghrA NOLOHH_21410 0.19 -1.4 4,205,408 - ghrA NOLOHH_21410 0.19 -0.4
Or see this region's nucleotide sequence