Strain Fitness in Escherichia coli ECOR27 around NOLOHH_20640

Experiment: Control_ECOR27

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntdauA and ychH are separated by 54 nucleotidesychH and pth are separated by 277 nucleotidespth and ychF are separated by 116 nucleotides NOLOHH_20635: dauA - C4-dicarboxylic acid transporter DauA, at 4,058,299 to 4,059,951 dauA NOLOHH_20640: ychH - stress-induced protein YchH, at 4,060,006 to 4,060,284 ychH NOLOHH_20645: pth - aminoacyl-tRNA hydrolase, at 4,060,562 to 4,061,146 pth NOLOHH_20650: ychF - redox-regulated ATPase YchF, at 4,061,263 to 4,062,354 ychF Position (kb) 4060 4061Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4059.081 kb on - strand, within dauAat 4059.342 kb on + strand, within dauAat 4059.537 kb on + strand, within dauAat 4059.949 kb on + strandat 4059.954 kb on - strandat 4060.001 kb on - strandat 4060.001 kb on - strandat 4060.011 kb on + strandat 4060.012 kb on - strandat 4060.138 kb on - strand, within ychHat 4060.138 kb on - strand, within ychHat 4060.174 kb on - strand, within ychHat 4060.177 kb on - strand, within ychHat 4060.177 kb on - strand, within ychHat 4060.177 kb on - strand, within ychHat 4060.284 kb on + strandat 4060.285 kb on - strandat 4060.285 kb on - strandat 4060.285 kb on - strandat 4060.285 kb on - strandat 4060.336 kb on - strandat 4060.342 kb on - strandat 4060.342 kb on - strandat 4060.342 kb on - strandat 4060.347 kb on - strandat 4060.367 kb on + strandat 4060.466 kb on - strandat 4060.486 kb on + strandat 4060.525 kb on + strandat 4060.540 kb on + strandat 4060.540 kb on + strandat 4060.540 kb on + strandat 4061.181 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECOR27
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4,059,081 - dauA NOLOHH_20635 0.47 -0.4
4,059,342 + dauA NOLOHH_20635 0.63 -0.4
4,059,537 + dauA NOLOHH_20635 0.75 +0.6
4,059,949 + +0.6
4,059,954 - -0.4
4,060,001 - +0.6
4,060,001 - +0.6
4,060,011 + -0.7
4,060,012 - -1.7
4,060,138 - ychH NOLOHH_20640 0.47 +1.3
4,060,138 - ychH NOLOHH_20640 0.47 -1.4
4,060,174 - ychH NOLOHH_20640 0.60 +0.0
4,060,177 - ychH NOLOHH_20640 0.61 +1.2
4,060,177 - ychH NOLOHH_20640 0.61 -0.4
4,060,177 - ychH NOLOHH_20640 0.61 -0.9
4,060,284 + +1.8
4,060,285 - +1.2
4,060,285 - -2.6
4,060,285 - +0.1
4,060,285 - -2.0
4,060,336 - +0.6
4,060,342 - -1.2
4,060,342 - +1.8
4,060,342 - -3.0
4,060,347 - -0.1
4,060,367 + -0.4
4,060,466 - +2.2
4,060,486 + +1.6
4,060,525 + +1.6
4,060,540 + +0.0
4,060,540 + +1.0
4,060,540 + +0.6
4,061,181 + -0.7

Or see this region's nucleotide sequence