Experiment: Control_ECOR27
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt marR and marC are separated by 211 nucleotides marC and ydeA are separated by 24 nucleotides ydeA and yneK are separated by 149 nucleotides yneK and yneK overlap by 4 nucleotides yneK and yneK overlap by 52 nucleotides
NOLOHH_18725: marR - multiple antibiotic resistance transcriptional regulator MarR, at 3,665,027 to 3,665,461
marR
NOLOHH_18730: marC - NAAT family transporter MarC, at 3,665,673 to 3,666,338
marC
NOLOHH_18735: ydeA - L-arabinose MFS transporter, at 3,666,363 to 3,667,553
ydeA
NOLOHH_18740: yneK - putative protein YneK, at 3,667,703 to 3,667,927
yneK
NOLOHH_18745: yneK - putative protein YneK, at 3,667,924 to 3,668,409
yneK
NOLOHH_18750: yneK - putative protein YneK, at 3,668,358 to 3,668,816
yneK
Position (kb)
3666
3667
3668 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3665.368 kb on - strand, within marR at 3665.368 kb on - strand, within marR at 3665.368 kb on - strand, within marR at 3665.429 kb on - strand at 3665.453 kb on - strand at 3665.481 kb on - strand at 3665.820 kb on + strand, within marC at 3665.873 kb on + strand, within marC at 3666.086 kb on + strand, within marC at 3666.089 kb on + strand, within marC at 3666.215 kb on + strand, within marC at 3666.277 kb on + strand at 3666.277 kb on + strand at 3666.281 kb on + strand at 3666.406 kb on - strand at 3666.455 kb on - strand at 3666.495 kb on - strand, within ydeA at 3666.499 kb on - strand, within ydeA at 3666.528 kb on - strand, within ydeA at 3666.658 kb on - strand, within ydeA at 3666.799 kb on - strand, within ydeA at 3666.847 kb on - strand, within ydeA at 3666.862 kb on + strand, within ydeA at 3666.863 kb on - strand, within ydeA at 3666.863 kb on - strand, within ydeA at 3666.943 kb on - strand, within ydeA at 3667.385 kb on - strand, within ydeA at 3667.398 kb on - strand, within ydeA at 3667.398 kb on - strand, within ydeA
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECOR27 remove 3,665,368 - marR NOLOHH_18725 0.78 +1.1 3,665,368 - marR NOLOHH_18725 0.78 +0.6 3,665,368 - marR NOLOHH_18725 0.78 -0.4 3,665,429 - +1.3 3,665,453 - -0.1 3,665,481 - +0.3 3,665,820 + marC NOLOHH_18730 0.22 +1.6 3,665,873 + marC NOLOHH_18730 0.30 +0.6 3,666,086 + marC NOLOHH_18730 0.62 -0.4 3,666,089 + marC NOLOHH_18730 0.62 +2.4 3,666,215 + marC NOLOHH_18730 0.81 -1.4 3,666,277 + +2.9 3,666,277 + -0.3 3,666,281 + -1.7 3,666,406 - +1.2 3,666,455 - -1.4 3,666,495 - ydeA NOLOHH_18735 0.11 +0.6 3,666,499 - ydeA NOLOHH_18735 0.11 -1.0 3,666,528 - ydeA NOLOHH_18735 0.14 +0.6 3,666,658 - ydeA NOLOHH_18735 0.25 -0.7 3,666,799 - ydeA NOLOHH_18735 0.37 -1.7 3,666,847 - ydeA NOLOHH_18735 0.41 -1.0 3,666,862 + ydeA NOLOHH_18735 0.42 +0.6 3,666,863 - ydeA NOLOHH_18735 0.42 -0.4 3,666,863 - ydeA NOLOHH_18735 0.42 -1.7 3,666,943 - ydeA NOLOHH_18735 0.49 -0.4 3,667,385 - ydeA NOLOHH_18735 0.86 -0.4 3,667,398 - ydeA NOLOHH_18735 0.87 -1.9 3,667,398 - ydeA NOLOHH_18735 0.87 -2.2
Or see this region's nucleotide sequence