Strain Fitness in Escherichia coli ECOR27 around NOLOHH_18735

Experiment: Control_ECOR27

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmarR and marC are separated by 211 nucleotidesmarC and ydeA are separated by 24 nucleotidesydeA and yneK are separated by 149 nucleotidesyneK and yneK overlap by 4 nucleotidesyneK and yneK overlap by 52 nucleotides NOLOHH_18725: marR - multiple antibiotic resistance transcriptional regulator MarR, at 3,665,027 to 3,665,461 marR NOLOHH_18730: marC - NAAT family transporter MarC, at 3,665,673 to 3,666,338 marC NOLOHH_18735: ydeA - L-arabinose MFS transporter, at 3,666,363 to 3,667,553 ydeA NOLOHH_18740: yneK - putative protein YneK, at 3,667,703 to 3,667,927 yneK NOLOHH_18745: yneK - putative protein YneK, at 3,667,924 to 3,668,409 yneK NOLOHH_18750: yneK - putative protein YneK, at 3,668,358 to 3,668,816 yneK Position (kb) 3666 3667 3668Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3665.368 kb on - strand, within marRat 3665.368 kb on - strand, within marRat 3665.368 kb on - strand, within marRat 3665.429 kb on - strandat 3665.453 kb on - strandat 3665.481 kb on - strandat 3665.820 kb on + strand, within marCat 3665.873 kb on + strand, within marCat 3666.086 kb on + strand, within marCat 3666.089 kb on + strand, within marCat 3666.215 kb on + strand, within marCat 3666.277 kb on + strandat 3666.277 kb on + strandat 3666.281 kb on + strandat 3666.406 kb on - strandat 3666.455 kb on - strandat 3666.495 kb on - strand, within ydeAat 3666.499 kb on - strand, within ydeAat 3666.528 kb on - strand, within ydeAat 3666.658 kb on - strand, within ydeAat 3666.799 kb on - strand, within ydeAat 3666.847 kb on - strand, within ydeAat 3666.862 kb on + strand, within ydeAat 3666.863 kb on - strand, within ydeAat 3666.863 kb on - strand, within ydeAat 3666.943 kb on - strand, within ydeAat 3667.385 kb on - strand, within ydeAat 3667.398 kb on - strand, within ydeAat 3667.398 kb on - strand, within ydeA

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECOR27
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3,665,368 - marR NOLOHH_18725 0.78 +1.1
3,665,368 - marR NOLOHH_18725 0.78 +0.6
3,665,368 - marR NOLOHH_18725 0.78 -0.4
3,665,429 - +1.3
3,665,453 - -0.1
3,665,481 - +0.3
3,665,820 + marC NOLOHH_18730 0.22 +1.6
3,665,873 + marC NOLOHH_18730 0.30 +0.6
3,666,086 + marC NOLOHH_18730 0.62 -0.4
3,666,089 + marC NOLOHH_18730 0.62 +2.4
3,666,215 + marC NOLOHH_18730 0.81 -1.4
3,666,277 + +2.9
3,666,277 + -0.3
3,666,281 + -1.7
3,666,406 - +1.2
3,666,455 - -1.4
3,666,495 - ydeA NOLOHH_18735 0.11 +0.6
3,666,499 - ydeA NOLOHH_18735 0.11 -1.0
3,666,528 - ydeA NOLOHH_18735 0.14 +0.6
3,666,658 - ydeA NOLOHH_18735 0.25 -0.7
3,666,799 - ydeA NOLOHH_18735 0.37 -1.7
3,666,847 - ydeA NOLOHH_18735 0.41 -1.0
3,666,862 + ydeA NOLOHH_18735 0.42 +0.6
3,666,863 - ydeA NOLOHH_18735 0.42 -0.4
3,666,863 - ydeA NOLOHH_18735 0.42 -1.7
3,666,943 - ydeA NOLOHH_18735 0.49 -0.4
3,667,385 - ydeA NOLOHH_18735 0.86 -0.4
3,667,398 - ydeA NOLOHH_18735 0.87 -1.9
3,667,398 - ydeA NOLOHH_18735 0.87 -2.2

Or see this region's nucleotide sequence