Strain Fitness in Escherichia coli ECOR27 around NOLOHH_17720

Experiment: Control_ECOR27

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntydiF and aroD are separated by 143 nucleotidesaroD and ydiB are separated by 30 nucleotidesydiB and uhpC are separated by 11 nucleotides NOLOHH_17710: ydiF - Acetate CoA-transferase YdiF, at 3,476,034 to 3,477,629 ydiF NOLOHH_17715: aroD - 3-dehydroquinate dehydratase, at 3,477,773 to 3,478,531 aroD NOLOHH_17720: ydiB - quinate/shikimate dehydrogenase, at 3,478,562 to 3,479,428 ydiB NOLOHH_17725: uhpC - MFS transporter, at 3,479,440 to 3,480,705 uhpC Position (kb) 3478 3479 3480Strain fitness (log2 ratio) -2 -1 0 1at 3478.729 kb on - strand, within ydiBat 3478.729 kb on - strand, within ydiBat 3479.314 kb on - strand, within ydiBat 3479.314 kb on - strand, within ydiBat 3479.314 kb on - strand, within ydiBat 3479.314 kb on - strand, within ydiBat 3479.318 kb on - strand, within ydiBat 3479.455 kb on - strandat 3480.374 kb on - strand, within uhpC

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECOR27
remove
3,478,729 - ydiB NOLOHH_17720 0.19 +1.4
3,478,729 - ydiB NOLOHH_17720 0.19 -2.2
3,479,314 - ydiB NOLOHH_17720 0.87 -0.4
3,479,314 - ydiB NOLOHH_17720 0.87 -2.4
3,479,314 - ydiB NOLOHH_17720 0.87 -2.0
3,479,314 - ydiB NOLOHH_17720 0.87 -1.8
3,479,318 - ydiB NOLOHH_17720 0.87 -2.0
3,479,455 - +0.3
3,480,374 - uhpC NOLOHH_17725 0.74 +0.6

Or see this region's nucleotide sequence