Strain Fitness in Escherichia coli ECOR27 around NOLOHH_15035

Experiment: Control_ECOR27

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpsuG and psuT are separated by 93 nucleotidespsuT and yeiL are separated by 70 nucleotidesyeiL and rihB are separated by 129 nucleotides NOLOHH_15030: psuG - pseudouridine-5'-phosphate glycosidase, at 2,945,850 to 2,946,788 psuG NOLOHH_15035: psuT - Putative pseudouridine transporter, at 2,946,882 to 2,948,132 psuT NOLOHH_15040: yeiL - Regulatory protein YeiL, at 2,948,203 to 2,948,901 yeiL NOLOHH_15045: rihB - ribosylpyrimidine nucleosidase, at 2,949,031 to 2,949,972 rihB Position (kb) 2946 2947 2948 2949Strain fitness (log2 ratio) -1 0 1 2at 2946.317 kb on + strand, within psuGat 2946.447 kb on - strand, within psuGat 2946.590 kb on + strand, within psuGat 2946.590 kb on + strand, within psuGat 2946.605 kb on - strand, within psuGat 2946.768 kb on + strandat 2946.830 kb on + strandat 2946.859 kb on - strandat 2946.889 kb on + strandat 2947.048 kb on + strand, within psuTat 2947.074 kb on - strand, within psuTat 2947.086 kb on + strand, within psuTat 2947.230 kb on + strand, within psuTat 2947.260 kb on - strand, within psuTat 2947.329 kb on - strand, within psuTat 2947.400 kb on - strand, within psuTat 2947.409 kb on + strand, within psuTat 2947.535 kb on + strand, within psuTat 2947.541 kb on + strand, within psuTat 2947.542 kb on - strand, within psuTat 2947.568 kb on + strand, within psuTat 2947.697 kb on + strand, within psuTat 2947.697 kb on + strand, within psuTat 2947.698 kb on - strand, within psuTat 2947.902 kb on + strand, within psuTat 2948.144 kb on + strandat 2948.153 kb on + strandat 2948.306 kb on - strand, within yeiLat 2948.340 kb on - strand, within yeiLat 2948.487 kb on + strand, within yeiLat 2948.656 kb on - strand, within yeiLat 2948.701 kb on - strand, within yeiLat 2948.742 kb on - strand, within yeiLat 2948.933 kb on + strandat 2948.938 kb on + strandat 2948.939 kb on - strandat 2948.939 kb on - strandat 2948.992 kb on + strandat 2949.026 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECOR27
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2,946,317 + psuG NOLOHH_15030 0.50 +0.9
2,946,447 - psuG NOLOHH_15030 0.64 +0.6
2,946,590 + psuG NOLOHH_15030 0.79 +1.3
2,946,590 + psuG NOLOHH_15030 0.79 +1.0
2,946,605 - psuG NOLOHH_15030 0.80 +0.9
2,946,768 + +0.0
2,946,830 + +0.2
2,946,859 - +0.6
2,946,889 + +1.6
2,947,048 + psuT NOLOHH_15035 0.13 -0.4
2,947,074 - psuT NOLOHH_15035 0.15 +0.6
2,947,086 + psuT NOLOHH_15035 0.16 +1.9
2,947,230 + psuT NOLOHH_15035 0.28 -1.4
2,947,260 - psuT NOLOHH_15035 0.30 -1.0
2,947,329 - psuT NOLOHH_15035 0.36 +2.6
2,947,400 - psuT NOLOHH_15035 0.41 +0.0
2,947,409 + psuT NOLOHH_15035 0.42 -1.0
2,947,535 + psuT NOLOHH_15035 0.52 -0.4
2,947,541 + psuT NOLOHH_15035 0.53 -0.7
2,947,542 - psuT NOLOHH_15035 0.53 +0.6
2,947,568 + psuT NOLOHH_15035 0.55 +0.6
2,947,697 + psuT NOLOHH_15035 0.65 +0.6
2,947,697 + psuT NOLOHH_15035 0.65 -0.7
2,947,698 - psuT NOLOHH_15035 0.65 +2.2
2,947,902 + psuT NOLOHH_15035 0.82 -0.8
2,948,144 + -0.4
2,948,153 + +0.0
2,948,306 - yeiL NOLOHH_15040 0.15 +0.2
2,948,340 - yeiL NOLOHH_15040 0.20 +1.6
2,948,487 + yeiL NOLOHH_15040 0.41 -0.4
2,948,656 - yeiL NOLOHH_15040 0.65 -0.4
2,948,701 - yeiL NOLOHH_15040 0.71 +0.6
2,948,742 - yeiL NOLOHH_15040 0.77 -0.4
2,948,933 + +0.6
2,948,938 + -0.7
2,948,939 - -1.7
2,948,939 - +1.0
2,948,992 + +0.2
2,949,026 - +0.6

Or see this region's nucleotide sequence