Experiment: Control_ECOR27
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt psuG and psuT are separated by 93 nucleotides psuT and yeiL are separated by 70 nucleotides yeiL and rihB are separated by 129 nucleotides
NOLOHH_15030: psuG - pseudouridine-5'-phosphate glycosidase, at 2,945,850 to 2,946,788
psuG
NOLOHH_15035: psuT - Putative pseudouridine transporter, at 2,946,882 to 2,948,132
psuT
NOLOHH_15040: yeiL - Regulatory protein YeiL, at 2,948,203 to 2,948,901
yeiL
NOLOHH_15045: rihB - ribosylpyrimidine nucleosidase, at 2,949,031 to 2,949,972
rihB
Position (kb)
2946
2947
2948
2949 Strain fitness (log2 ratio)
-1
0
1
2 at 2946.317 kb on + strand, within psuG at 2946.447 kb on - strand, within psuG at 2946.590 kb on + strand, within psuG at 2946.590 kb on + strand, within psuG at 2946.605 kb on - strand, within psuG at 2946.768 kb on + strand at 2946.830 kb on + strand at 2946.859 kb on - strand at 2946.889 kb on + strand at 2947.048 kb on + strand, within psuT at 2947.074 kb on - strand, within psuT at 2947.086 kb on + strand, within psuT at 2947.230 kb on + strand, within psuT at 2947.260 kb on - strand, within psuT at 2947.329 kb on - strand, within psuT at 2947.400 kb on - strand, within psuT at 2947.409 kb on + strand, within psuT at 2947.535 kb on + strand, within psuT at 2947.541 kb on + strand, within psuT at 2947.542 kb on - strand, within psuT at 2947.568 kb on + strand, within psuT at 2947.697 kb on + strand, within psuT at 2947.697 kb on + strand, within psuT at 2947.698 kb on - strand, within psuT at 2947.902 kb on + strand, within psuT at 2948.144 kb on + strand at 2948.153 kb on + strand at 2948.306 kb on - strand, within yeiL at 2948.340 kb on - strand, within yeiL at 2948.487 kb on + strand, within yeiL at 2948.656 kb on - strand, within yeiL at 2948.701 kb on - strand, within yeiL at 2948.742 kb on - strand, within yeiL at 2948.933 kb on + strand at 2948.938 kb on + strand at 2948.939 kb on - strand at 2948.939 kb on - strand at 2948.992 kb on + strand at 2949.026 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECOR27 remove 2,946,317 + psuG NOLOHH_15030 0.50 +0.9 2,946,447 - psuG NOLOHH_15030 0.64 +0.6 2,946,590 + psuG NOLOHH_15030 0.79 +1.3 2,946,590 + psuG NOLOHH_15030 0.79 +1.0 2,946,605 - psuG NOLOHH_15030 0.80 +0.9 2,946,768 + +0.0 2,946,830 + +0.2 2,946,859 - +0.6 2,946,889 + +1.6 2,947,048 + psuT NOLOHH_15035 0.13 -0.4 2,947,074 - psuT NOLOHH_15035 0.15 +0.6 2,947,086 + psuT NOLOHH_15035 0.16 +1.9 2,947,230 + psuT NOLOHH_15035 0.28 -1.4 2,947,260 - psuT NOLOHH_15035 0.30 -1.0 2,947,329 - psuT NOLOHH_15035 0.36 +2.6 2,947,400 - psuT NOLOHH_15035 0.41 +0.0 2,947,409 + psuT NOLOHH_15035 0.42 -1.0 2,947,535 + psuT NOLOHH_15035 0.52 -0.4 2,947,541 + psuT NOLOHH_15035 0.53 -0.7 2,947,542 - psuT NOLOHH_15035 0.53 +0.6 2,947,568 + psuT NOLOHH_15035 0.55 +0.6 2,947,697 + psuT NOLOHH_15035 0.65 +0.6 2,947,697 + psuT NOLOHH_15035 0.65 -0.7 2,947,698 - psuT NOLOHH_15035 0.65 +2.2 2,947,902 + psuT NOLOHH_15035 0.82 -0.8 2,948,144 + -0.4 2,948,153 + +0.0 2,948,306 - yeiL NOLOHH_15040 0.15 +0.2 2,948,340 - yeiL NOLOHH_15040 0.20 +1.6 2,948,487 + yeiL NOLOHH_15040 0.41 -0.4 2,948,656 - yeiL NOLOHH_15040 0.65 -0.4 2,948,701 - yeiL NOLOHH_15040 0.71 +0.6 2,948,742 - yeiL NOLOHH_15040 0.77 -0.4 2,948,933 + +0.6 2,948,938 + -0.7 2,948,939 - -1.7 2,948,939 - +1.0 2,948,992 + +0.2 2,949,026 - +0.6
Or see this region's nucleotide sequence