Experiment: Control_ECOR27
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt bcr and yejG are separated by 332 nucleotides yejG and yejF are separated by 3 nucleotides
NOLOHH_14940: bcr - multidrug efflux MFS transporter Bcr, at 2,924,456 to 2,925,646
bcr
NOLOHH_14945: yejG - Uncharacterized protein YejG, at 2,925,979 to 2,926,323
yejG
NOLOHH_14950: yejF - microcin C ABC transporter ATP-binding protein YejF, at 2,926,327 to 2,927,916
yejF
Position (kb)
2925
2926
2927 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2925.055 kb on + strand, within bcr at 2925.062 kb on - strand, within bcr at 2925.107 kb on + strand, within bcr at 2925.108 kb on - strand, within bcr at 2925.108 kb on - strand, within bcr at 2925.173 kb on + strand, within bcr at 2925.174 kb on - strand, within bcr at 2925.213 kb on - strand, within bcr at 2925.216 kb on - strand, within bcr at 2925.225 kb on + strand, within bcr at 2925.295 kb on + strand, within bcr at 2925.295 kb on + strand, within bcr at 2925.295 kb on + strand, within bcr at 2925.296 kb on - strand, within bcr at 2925.325 kb on + strand, within bcr at 2925.326 kb on - strand, within bcr at 2925.513 kb on + strand, within bcr at 2925.810 kb on + strand at 2925.810 kb on + strand at 2925.810 kb on + strand at 2925.810 kb on + strand at 2925.842 kb on + strand at 2925.860 kb on + strand at 2925.862 kb on + strand at 2925.862 kb on + strand at 2926.153 kb on + strand, within yejG at 2926.153 kb on + strand, within yejG at 2926.153 kb on + strand, within yejG at 2926.153 kb on + strand, within yejG at 2926.155 kb on + strand, within yejG at 2926.155 kb on + strand, within yejG at 2926.155 kb on + strand, within yejG at 2926.155 kb on + strand, within yejG at 2926.309 kb on + strand at 2926.309 kb on + strand at 2926.342 kb on + strand at 2926.353 kb on + strand at 2926.354 kb on - strand at 2926.355 kb on + strand at 2926.355 kb on + strand at 2926.355 kb on + strand at 2926.441 kb on + strand at 2926.442 kb on - strand at 2926.442 kb on - strand at 2926.517 kb on - strand, within yejF at 2926.526 kb on - strand, within yejF at 2926.574 kb on - strand, within yejF at 2926.617 kb on + strand, within yejF at 2926.840 kb on - strand, within yejF at 2926.996 kb on - strand, within yejF at 2927.023 kb on - strand, within yejF at 2927.162 kb on + strand, within yejF at 2927.162 kb on + strand, within yejF
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECOR27 remove 2,925,055 + bcr NOLOHH_14940 0.50 -1.4 2,925,062 - bcr NOLOHH_14940 0.51 -0.4 2,925,107 + bcr NOLOHH_14940 0.55 +0.2 2,925,108 - bcr NOLOHH_14940 0.55 +1.2 2,925,108 - bcr NOLOHH_14940 0.55 +0.6 2,925,173 + bcr NOLOHH_14940 0.60 -0.2 2,925,174 - bcr NOLOHH_14940 0.60 -0.4 2,925,213 - bcr NOLOHH_14940 0.64 +0.4 2,925,216 - bcr NOLOHH_14940 0.64 +3.0 2,925,225 + bcr NOLOHH_14940 0.65 +0.6 2,925,295 + bcr NOLOHH_14940 0.70 +0.6 2,925,295 + bcr NOLOHH_14940 0.70 +0.6 2,925,295 + bcr NOLOHH_14940 0.70 +1.6 2,925,296 - bcr NOLOHH_14940 0.71 +0.6 2,925,325 + bcr NOLOHH_14940 0.73 +1.2 2,925,326 - bcr NOLOHH_14940 0.73 +0.6 2,925,513 + bcr NOLOHH_14940 0.89 +0.0 2,925,810 + +0.5 2,925,810 + -2.2 2,925,810 + +0.6 2,925,810 + -0.6 2,925,842 + -0.8 2,925,860 + -2.0 2,925,862 + +0.7 2,925,862 + +0.6 2,926,153 + yejG NOLOHH_14945 0.50 +3.0 2,926,153 + yejG NOLOHH_14945 0.50 -0.6 2,926,153 + yejG NOLOHH_14945 0.50 -1.7 2,926,153 + yejG NOLOHH_14945 0.50 +0.6 2,926,155 + yejG NOLOHH_14945 0.51 -1.4 2,926,155 + yejG NOLOHH_14945 0.51 -0.6 2,926,155 + yejG NOLOHH_14945 0.51 -1.2 2,926,155 + yejG NOLOHH_14945 0.51 -0.6 2,926,309 + +0.6 2,926,309 + -0.4 2,926,342 + -0.4 2,926,353 + -1.4 2,926,354 - -0.2 2,926,355 + -0.4 2,926,355 + -1.2 2,926,355 + -1.7 2,926,441 + -0.2 2,926,442 - -0.2 2,926,442 - +0.6 2,926,517 - yejF NOLOHH_14950 0.12 -0.4 2,926,526 - yejF NOLOHH_14950 0.13 -0.4 2,926,574 - yejF NOLOHH_14950 0.16 +0.6 2,926,617 + yejF NOLOHH_14950 0.18 +0.6 2,926,840 - yejF NOLOHH_14950 0.32 -1.0 2,926,996 - yejF NOLOHH_14950 0.42 -0.7 2,927,023 - yejF NOLOHH_14950 0.44 +1.2 2,927,162 + yejF NOLOHH_14950 0.53 +0.6 2,927,162 + yejF NOLOHH_14950 0.53 -1.4
Or see this region's nucleotide sequence