Strain Fitness in Escherichia coli ECOR27 around NOLOHH_14945

Experiment: Control_ECOR27

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntbcr and yejG are separated by 332 nucleotidesyejG and yejF are separated by 3 nucleotides NOLOHH_14940: bcr - multidrug efflux MFS transporter Bcr, at 2,924,456 to 2,925,646 bcr NOLOHH_14945: yejG - Uncharacterized protein YejG, at 2,925,979 to 2,926,323 yejG NOLOHH_14950: yejF - microcin C ABC transporter ATP-binding protein YejF, at 2,926,327 to 2,927,916 yejF Position (kb) 2925 2926 2927Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2925.055 kb on + strand, within bcrat 2925.062 kb on - strand, within bcrat 2925.107 kb on + strand, within bcrat 2925.108 kb on - strand, within bcrat 2925.108 kb on - strand, within bcrat 2925.173 kb on + strand, within bcrat 2925.174 kb on - strand, within bcrat 2925.213 kb on - strand, within bcrat 2925.216 kb on - strand, within bcrat 2925.225 kb on + strand, within bcrat 2925.295 kb on + strand, within bcrat 2925.295 kb on + strand, within bcrat 2925.295 kb on + strand, within bcrat 2925.296 kb on - strand, within bcrat 2925.325 kb on + strand, within bcrat 2925.326 kb on - strand, within bcrat 2925.513 kb on + strand, within bcrat 2925.810 kb on + strandat 2925.810 kb on + strandat 2925.810 kb on + strandat 2925.810 kb on + strandat 2925.842 kb on + strandat 2925.860 kb on + strandat 2925.862 kb on + strandat 2925.862 kb on + strandat 2926.153 kb on + strand, within yejGat 2926.153 kb on + strand, within yejGat 2926.153 kb on + strand, within yejGat 2926.153 kb on + strand, within yejGat 2926.155 kb on + strand, within yejGat 2926.155 kb on + strand, within yejGat 2926.155 kb on + strand, within yejGat 2926.155 kb on + strand, within yejGat 2926.309 kb on + strandat 2926.309 kb on + strandat 2926.342 kb on + strandat 2926.353 kb on + strandat 2926.354 kb on - strandat 2926.355 kb on + strandat 2926.355 kb on + strandat 2926.355 kb on + strandat 2926.441 kb on + strandat 2926.442 kb on - strandat 2926.442 kb on - strandat 2926.517 kb on - strand, within yejFat 2926.526 kb on - strand, within yejFat 2926.574 kb on - strand, within yejFat 2926.617 kb on + strand, within yejFat 2926.840 kb on - strand, within yejFat 2926.996 kb on - strand, within yejFat 2927.023 kb on - strand, within yejFat 2927.162 kb on + strand, within yejFat 2927.162 kb on + strand, within yejF

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECOR27
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2,925,055 + bcr NOLOHH_14940 0.50 -1.4
2,925,062 - bcr NOLOHH_14940 0.51 -0.4
2,925,107 + bcr NOLOHH_14940 0.55 +0.2
2,925,108 - bcr NOLOHH_14940 0.55 +1.2
2,925,108 - bcr NOLOHH_14940 0.55 +0.6
2,925,173 + bcr NOLOHH_14940 0.60 -0.2
2,925,174 - bcr NOLOHH_14940 0.60 -0.4
2,925,213 - bcr NOLOHH_14940 0.64 +0.4
2,925,216 - bcr NOLOHH_14940 0.64 +3.0
2,925,225 + bcr NOLOHH_14940 0.65 +0.6
2,925,295 + bcr NOLOHH_14940 0.70 +0.6
2,925,295 + bcr NOLOHH_14940 0.70 +0.6
2,925,295 + bcr NOLOHH_14940 0.70 +1.6
2,925,296 - bcr NOLOHH_14940 0.71 +0.6
2,925,325 + bcr NOLOHH_14940 0.73 +1.2
2,925,326 - bcr NOLOHH_14940 0.73 +0.6
2,925,513 + bcr NOLOHH_14940 0.89 +0.0
2,925,810 + +0.5
2,925,810 + -2.2
2,925,810 + +0.6
2,925,810 + -0.6
2,925,842 + -0.8
2,925,860 + -2.0
2,925,862 + +0.7
2,925,862 + +0.6
2,926,153 + yejG NOLOHH_14945 0.50 +3.0
2,926,153 + yejG NOLOHH_14945 0.50 -0.6
2,926,153 + yejG NOLOHH_14945 0.50 -1.7
2,926,153 + yejG NOLOHH_14945 0.50 +0.6
2,926,155 + yejG NOLOHH_14945 0.51 -1.4
2,926,155 + yejG NOLOHH_14945 0.51 -0.6
2,926,155 + yejG NOLOHH_14945 0.51 -1.2
2,926,155 + yejG NOLOHH_14945 0.51 -0.6
2,926,309 + +0.6
2,926,309 + -0.4
2,926,342 + -0.4
2,926,353 + -1.4
2,926,354 - -0.2
2,926,355 + -0.4
2,926,355 + -1.2
2,926,355 + -1.7
2,926,441 + -0.2
2,926,442 - -0.2
2,926,442 - +0.6
2,926,517 - yejF NOLOHH_14950 0.12 -0.4
2,926,526 - yejF NOLOHH_14950 0.13 -0.4
2,926,574 - yejF NOLOHH_14950 0.16 +0.6
2,926,617 + yejF NOLOHH_14950 0.18 +0.6
2,926,840 - yejF NOLOHH_14950 0.32 -1.0
2,926,996 - yejF NOLOHH_14950 0.42 -0.7
2,927,023 - yejF NOLOHH_14950 0.44 +1.2
2,927,162 + yejF NOLOHH_14950 0.53 +0.6
2,927,162 + yejF NOLOHH_14950 0.53 -1.4

Or see this region's nucleotide sequence