Experiment: Control_ECOR27
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NOLOHH_14455 and nuoA are separated by 262 nucleotides nuoA and nuoB are separated by 15 nucleotides nuoB and nuoC are separated by 93 nucleotides
NOLOHH_14455: NOLOHH_14455 - hypothetical protein, at 2,816,505 to 2,816,669
_14455
NOLOHH_14460: nuoA - NADH-quinone oxidoreductase subunit NuoA, at 2,816,932 to 2,817,375
nuoA
NOLOHH_14465: nuoB - NADH-quinone oxidoreductase subunit NuoB, at 2,817,391 to 2,818,053
nuoB
NOLOHH_14470: nuoC - NADH-quinone oxidoreductase subunit C/D, at 2,818,147 to 2,819,949
nuoC
Position (kb)
2817
2818
2819 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2816.496 kb on - strand at 2816.620 kb on + strand, within NOLOHH_14455 at 2816.671 kb on + strand at 2816.671 kb on + strand at 2816.671 kb on + strand at 2816.671 kb on + strand at 2816.672 kb on - strand at 2816.672 kb on - strand at 2816.810 kb on + strand at 2816.810 kb on + strand at 2816.816 kb on + strand at 2816.817 kb on - strand at 2816.830 kb on + strand at 2816.841 kb on + strand at 2816.926 kb on + strand at 2816.927 kb on - strand at 2816.937 kb on + strand at 2816.937 kb on + strand at 2816.938 kb on - strand at 2816.938 kb on - strand at 2817.116 kb on + strand, within nuoA at 2817.181 kb on + strand, within nuoA at 2817.181 kb on + strand, within nuoA at 2817.182 kb on - strand, within nuoA at 2817.182 kb on - strand, within nuoA at 2817.224 kb on + strand, within nuoA at 2817.354 kb on + strand at 2817.388 kb on - strand at 2817.397 kb on + strand at 2817.397 kb on + strand at 2817.399 kb on + strand at 2817.400 kb on - strand at 2817.400 kb on - strand at 2817.540 kb on + strand, within nuoB at 2817.561 kb on + strand, within nuoB at 2817.562 kb on - strand, within nuoB at 2817.583 kb on + strand, within nuoB at 2817.584 kb on - strand, within nuoB at 2817.644 kb on + strand, within nuoB at 2817.717 kb on + strand, within nuoB at 2817.730 kb on + strand, within nuoB at 2817.792 kb on + strand, within nuoB at 2817.793 kb on - strand, within nuoB at 2817.796 kb on + strand, within nuoB at 2817.796 kb on + strand, within nuoB at 2817.797 kb on - strand, within nuoB at 2817.797 kb on - strand, within nuoB at 2817.806 kb on - strand, within nuoB at 2817.850 kb on + strand, within nuoB at 2817.850 kb on + strand, within nuoB at 2817.850 kb on + strand, within nuoB at 2817.851 kb on - strand, within nuoB at 2817.851 kb on - strand, within nuoB at 2817.851 kb on - strand, within nuoB at 2817.851 kb on - strand, within nuoB at 2817.851 kb on - strand, within nuoB at 2817.852 kb on + strand, within nuoB at 2817.853 kb on - strand, within nuoB at 2817.883 kb on + strand, within nuoB at 2817.883 kb on + strand, within nuoB at 2817.883 kb on + strand, within nuoB at 2817.884 kb on - strand, within nuoB at 2817.979 kb on - strand, within nuoB at 2818.035 kb on + strand at 2818.035 kb on + strand at 2818.035 kb on + strand at 2818.035 kb on + strand at 2818.158 kb on + strand at 2818.159 kb on - strand at 2818.357 kb on + strand, within nuoC at 2818.357 kb on + strand, within nuoC at 2818.377 kb on - strand, within nuoC at 2818.555 kb on + strand, within nuoC at 2818.555 kb on + strand, within nuoC at 2818.556 kb on - strand, within nuoC at 2818.587 kb on + strand, within nuoC at 2818.588 kb on - strand, within nuoC at 2818.588 kb on - strand, within nuoC at 2818.656 kb on + strand, within nuoC at 2818.948 kb on + strand, within nuoC at 2818.948 kb on + strand, within nuoC at 2818.948 kb on + strand, within nuoC at 2818.949 kb on - strand, within nuoC at 2818.949 kb on - strand, within nuoC at 2818.949 kb on - strand, within nuoC at 2818.975 kb on + strand, within nuoC at 2819.005 kb on + strand, within nuoC at 2819.005 kb on + strand, within nuoC at 2819.006 kb on - strand, within nuoC at 2819.006 kb on - strand, within nuoC
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECOR27 remove 2,816,496 - -0.2 2,816,620 + NOLOHH_14455 0.70 +0.4 2,816,671 + +0.2 2,816,671 + -2.2 2,816,671 + -0.8 2,816,671 + +0.3 2,816,672 - +0.6 2,816,672 - -1.2 2,816,810 + -1.0 2,816,810 + +1.9 2,816,816 + -1.4 2,816,817 - -0.4 2,816,830 + -1.0 2,816,841 + -0.5 2,816,926 + +1.6 2,816,927 - -2.4 2,816,937 + +0.6 2,816,937 + +0.2 2,816,938 - -1.2 2,816,938 - -1.7 2,817,116 + nuoA NOLOHH_14460 0.41 -2.0 2,817,181 + nuoA NOLOHH_14460 0.56 +0.0 2,817,181 + nuoA NOLOHH_14460 0.56 -2.2 2,817,182 - nuoA NOLOHH_14460 0.56 -2.0 2,817,182 - nuoA NOLOHH_14460 0.56 -0.4 2,817,224 + nuoA NOLOHH_14460 0.66 -1.1 2,817,354 + -0.4 2,817,388 - +2.6 2,817,397 + -0.4 2,817,397 + +0.6 2,817,399 + -1.7 2,817,400 - +1.6 2,817,400 - +0.6 2,817,540 + nuoB NOLOHH_14465 0.22 -1.4 2,817,561 + nuoB NOLOHH_14465 0.26 -0.4 2,817,562 - nuoB NOLOHH_14465 0.26 -1.4 2,817,583 + nuoB NOLOHH_14465 0.29 -0.4 2,817,584 - nuoB NOLOHH_14465 0.29 -1.7 2,817,644 + nuoB NOLOHH_14465 0.38 -1.7 2,817,717 + nuoB NOLOHH_14465 0.49 +0.6 2,817,730 + nuoB NOLOHH_14465 0.51 -1.7 2,817,792 + nuoB NOLOHH_14465 0.60 +0.6 2,817,793 - nuoB NOLOHH_14465 0.61 -0.4 2,817,796 + nuoB NOLOHH_14465 0.61 +0.6 2,817,796 + nuoB NOLOHH_14465 0.61 -1.0 2,817,797 - nuoB NOLOHH_14465 0.61 +0.6 2,817,797 - nuoB NOLOHH_14465 0.61 -0.4 2,817,806 - nuoB NOLOHH_14465 0.63 -1.4 2,817,850 + nuoB NOLOHH_14465 0.69 +0.6 2,817,850 + nuoB NOLOHH_14465 0.69 +0.6 2,817,850 + nuoB NOLOHH_14465 0.69 -0.4 2,817,851 - nuoB NOLOHH_14465 0.69 -1.0 2,817,851 - nuoB NOLOHH_14465 0.69 -0.4 2,817,851 - nuoB NOLOHH_14465 0.69 +0.6 2,817,851 - nuoB NOLOHH_14465 0.69 -1.7 2,817,851 - nuoB NOLOHH_14465 0.69 +1.6 2,817,852 + nuoB NOLOHH_14465 0.70 -2.2 2,817,853 - nuoB NOLOHH_14465 0.70 -1.0 2,817,883 + nuoB NOLOHH_14465 0.74 +0.0 2,817,883 + nuoB NOLOHH_14465 0.74 -0.7 2,817,883 + nuoB NOLOHH_14465 0.74 -2.4 2,817,884 - nuoB NOLOHH_14465 0.74 -0.7 2,817,979 - nuoB NOLOHH_14465 0.89 -0.4 2,818,035 + -1.0 2,818,035 + -1.1 2,818,035 + -1.2 2,818,035 + +1.2 2,818,158 + -1.0 2,818,159 - -1.4 2,818,357 + nuoC NOLOHH_14470 0.12 -1.0 2,818,357 + nuoC NOLOHH_14470 0.12 -0.4 2,818,377 - nuoC NOLOHH_14470 0.13 +0.6 2,818,555 + nuoC NOLOHH_14470 0.23 +1.0 2,818,555 + nuoC NOLOHH_14470 0.23 +2.9 2,818,556 - nuoC NOLOHH_14470 0.23 -0.4 2,818,587 + nuoC NOLOHH_14470 0.24 -1.0 2,818,588 - nuoC NOLOHH_14470 0.24 +2.2 2,818,588 - nuoC NOLOHH_14470 0.24 +0.2 2,818,656 + nuoC NOLOHH_14470 0.28 -2.0 2,818,948 + nuoC NOLOHH_14470 0.44 -1.4 2,818,948 + nuoC NOLOHH_14470 0.44 -1.0 2,818,948 + nuoC NOLOHH_14470 0.44 -1.4 2,818,949 - nuoC NOLOHH_14470 0.44 +0.6 2,818,949 - nuoC NOLOHH_14470 0.44 +0.3 2,818,949 - nuoC NOLOHH_14470 0.44 -1.4 2,818,975 + nuoC NOLOHH_14470 0.46 +0.6 2,819,005 + nuoC NOLOHH_14470 0.48 +0.2 2,819,005 + nuoC NOLOHH_14470 0.48 -0.4 2,819,006 - nuoC NOLOHH_14470 0.48 -1.0 2,819,006 - nuoC NOLOHH_14470 0.48 -1.0
Or see this region's nucleotide sequence