Experiment: Control_ECOR27
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yfcF and yfcE are separated by 55 nucleotides yfcE and yfcD are separated by 57 nucleotides yfcD and yfcC are separated by 32 nucleotides
NOLOHH_14390: yfcF - glutathione transferase, at 2,801,519 to 2,802,163
yfcF
NOLOHH_14395: yfcE - phosphodiesterase, at 2,802,219 to 2,802,770
yfcE
NOLOHH_14400: yfcD - NUDIX hydrolase YfcD, at 2,802,828 to 2,803,370
yfcD
NOLOHH_14405: yfcC - putative basic amino acid antiporter YfcC, at 2,803,403 to 2,804,881
yfcC
Position (kb)
2802
2803
2804 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2801.977 kb on - strand, within yfcF at 2802.022 kb on + strand, within yfcF at 2802.023 kb on - strand, within yfcF at 2802.044 kb on - strand, within yfcF at 2802.054 kb on + strand, within yfcF at 2802.057 kb on + strand, within yfcF at 2802.133 kb on + strand at 2802.188 kb on + strand at 2802.188 kb on + strand at 2802.188 kb on + strand at 2802.188 kb on + strand at 2802.189 kb on - strand at 2802.189 kb on - strand at 2802.189 kb on - strand at 2802.193 kb on + strand at 2802.193 kb on + strand at 2802.410 kb on + strand, within yfcE at 2802.410 kb on + strand, within yfcE at 2802.410 kb on + strand, within yfcE at 2802.410 kb on + strand, within yfcE at 2802.410 kb on + strand, within yfcE at 2802.410 kb on + strand, within yfcE at 2802.410 kb on + strand, within yfcE at 2802.411 kb on - strand, within yfcE at 2802.411 kb on - strand, within yfcE at 2802.411 kb on - strand, within yfcE at 2802.496 kb on + strand, within yfcE at 2802.496 kb on + strand, within yfcE at 2802.496 kb on + strand, within yfcE at 2802.566 kb on - strand, within yfcE at 2802.589 kb on - strand, within yfcE at 2802.687 kb on + strand, within yfcE at 2802.709 kb on + strand, within yfcE at 2802.714 kb on - strand, within yfcE at 2802.718 kb on + strand at 2802.740 kb on + strand at 2802.740 kb on + strand at 2802.773 kb on + strand at 2802.851 kb on + strand at 2802.866 kb on + strand at 2802.948 kb on + strand, within yfcD at 2802.948 kb on + strand, within yfcD at 2802.948 kb on + strand, within yfcD at 2802.948 kb on + strand, within yfcD at 2802.948 kb on + strand, within yfcD at 2802.948 kb on + strand, within yfcD at 2802.949 kb on - strand, within yfcD at 2803.027 kb on + strand, within yfcD at 2803.028 kb on - strand, within yfcD at 2803.405 kb on - strand at 2803.450 kb on + strand at 2803.451 kb on - strand at 2803.451 kb on - strand at 2803.451 kb on - strand at 2803.453 kb on + strand at 2803.454 kb on - strand at 2803.714 kb on + strand, within yfcC at 2803.714 kb on + strand, within yfcC at 2803.778 kb on - strand, within yfcC at 2803.782 kb on - strand, within yfcC at 2803.904 kb on - strand, within yfcC at 2803.904 kb on - strand, within yfcC at 2804.175 kb on + strand, within yfcC at 2804.334 kb on + strand, within yfcC at 2804.334 kb on + strand, within yfcC at 2804.335 kb on - strand, within yfcC at 2804.335 kb on - strand, within yfcC at 2804.335 kb on - strand, within yfcC at 2804.335 kb on - strand, within yfcC at 2804.335 kb on - strand, within yfcC at 2804.335 kb on - strand, within yfcC at 2804.335 kb on - strand, within yfcC
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECOR27 remove 2,801,977 - yfcF NOLOHH_14390 0.71 +1.6 2,802,022 + yfcF NOLOHH_14390 0.78 +0.6 2,802,023 - yfcF NOLOHH_14390 0.78 +0.6 2,802,044 - yfcF NOLOHH_14390 0.81 +2.0 2,802,054 + yfcF NOLOHH_14390 0.83 -1.0 2,802,057 + yfcF NOLOHH_14390 0.83 -1.1 2,802,133 + -0.1 2,802,188 + +0.6 2,802,188 + -0.4 2,802,188 + -0.1 2,802,188 + -1.6 2,802,189 - +1.6 2,802,189 - -0.5 2,802,189 - +0.4 2,802,193 + +0.1 2,802,193 + -0.4 2,802,410 + yfcE NOLOHH_14395 0.35 +1.2 2,802,410 + yfcE NOLOHH_14395 0.35 +0.0 2,802,410 + yfcE NOLOHH_14395 0.35 +0.6 2,802,410 + yfcE NOLOHH_14395 0.35 -0.1 2,802,410 + yfcE NOLOHH_14395 0.35 -0.2 2,802,410 + yfcE NOLOHH_14395 0.35 -0.4 2,802,410 + yfcE NOLOHH_14395 0.35 -1.0 2,802,411 - yfcE NOLOHH_14395 0.35 -1.0 2,802,411 - yfcE NOLOHH_14395 0.35 -1.4 2,802,411 - yfcE NOLOHH_14395 0.35 -0.4 2,802,496 + yfcE NOLOHH_14395 0.50 +1.3 2,802,496 + yfcE NOLOHH_14395 0.50 +0.0 2,802,496 + yfcE NOLOHH_14395 0.50 -0.6 2,802,566 - yfcE NOLOHH_14395 0.63 -1.0 2,802,589 - yfcE NOLOHH_14395 0.67 +0.6 2,802,687 + yfcE NOLOHH_14395 0.85 -1.4 2,802,709 + yfcE NOLOHH_14395 0.89 -1.2 2,802,714 - yfcE NOLOHH_14395 0.90 -2.2 2,802,718 + +0.3 2,802,740 + -0.3 2,802,740 + +1.6 2,802,773 + -1.0 2,802,851 + -0.1 2,802,866 + -0.5 2,802,948 + yfcD NOLOHH_14400 0.22 -0.1 2,802,948 + yfcD NOLOHH_14400 0.22 -0.8 2,802,948 + yfcD NOLOHH_14400 0.22 -1.7 2,802,948 + yfcD NOLOHH_14400 0.22 +0.6 2,802,948 + yfcD NOLOHH_14400 0.22 -0.4 2,802,948 + yfcD NOLOHH_14400 0.22 -1.0 2,802,949 - yfcD NOLOHH_14400 0.22 -1.7 2,803,027 + yfcD NOLOHH_14400 0.37 -1.7 2,803,028 - yfcD NOLOHH_14400 0.37 -2.2 2,803,405 - +0.6 2,803,450 + +0.3 2,803,451 - +0.6 2,803,451 - +0.6 2,803,451 - -0.4 2,803,453 + +0.0 2,803,454 - +0.6 2,803,714 + yfcC NOLOHH_14405 0.21 +1.6 2,803,714 + yfcC NOLOHH_14405 0.21 -0.6 2,803,778 - yfcC NOLOHH_14405 0.25 +0.2 2,803,782 - yfcC NOLOHH_14405 0.26 +1.6 2,803,904 - yfcC NOLOHH_14405 0.34 +0.3 2,803,904 - yfcC NOLOHH_14405 0.34 +1.2 2,804,175 + yfcC NOLOHH_14405 0.52 +0.1 2,804,334 + yfcC NOLOHH_14405 0.63 +1.2 2,804,334 + yfcC NOLOHH_14405 0.63 -0.4 2,804,335 - yfcC NOLOHH_14405 0.63 -1.0 2,804,335 - yfcC NOLOHH_14405 0.63 -0.6 2,804,335 - yfcC NOLOHH_14405 0.63 +0.4 2,804,335 - yfcC NOLOHH_14405 0.63 -1.0 2,804,335 - yfcC NOLOHH_14405 0.63 +0.0 2,804,335 - yfcC NOLOHH_14405 0.63 +0.6 2,804,335 - yfcC NOLOHH_14405 0.63 +0.3
Or see this region's nucleotide sequence