Strain Fitness in Escherichia coli ECOR27 around NOLOHH_14400

Experiment: Control_ECOR27

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyfcF and yfcE are separated by 55 nucleotidesyfcE and yfcD are separated by 57 nucleotidesyfcD and yfcC are separated by 32 nucleotides NOLOHH_14390: yfcF - glutathione transferase, at 2,801,519 to 2,802,163 yfcF NOLOHH_14395: yfcE - phosphodiesterase, at 2,802,219 to 2,802,770 yfcE NOLOHH_14400: yfcD - NUDIX hydrolase YfcD, at 2,802,828 to 2,803,370 yfcD NOLOHH_14405: yfcC - putative basic amino acid antiporter YfcC, at 2,803,403 to 2,804,881 yfcC Position (kb) 2802 2803 2804Strain fitness (log2 ratio) -2 -1 0 1 2at 2801.977 kb on - strand, within yfcFat 2802.022 kb on + strand, within yfcFat 2802.023 kb on - strand, within yfcFat 2802.044 kb on - strand, within yfcFat 2802.054 kb on + strand, within yfcFat 2802.057 kb on + strand, within yfcFat 2802.133 kb on + strandat 2802.188 kb on + strandat 2802.188 kb on + strandat 2802.188 kb on + strandat 2802.188 kb on + strandat 2802.189 kb on - strandat 2802.189 kb on - strandat 2802.189 kb on - strandat 2802.193 kb on + strandat 2802.193 kb on + strandat 2802.410 kb on + strand, within yfcEat 2802.410 kb on + strand, within yfcEat 2802.410 kb on + strand, within yfcEat 2802.410 kb on + strand, within yfcEat 2802.410 kb on + strand, within yfcEat 2802.410 kb on + strand, within yfcEat 2802.410 kb on + strand, within yfcEat 2802.411 kb on - strand, within yfcEat 2802.411 kb on - strand, within yfcEat 2802.411 kb on - strand, within yfcEat 2802.496 kb on + strand, within yfcEat 2802.496 kb on + strand, within yfcEat 2802.496 kb on + strand, within yfcEat 2802.566 kb on - strand, within yfcEat 2802.589 kb on - strand, within yfcEat 2802.687 kb on + strand, within yfcEat 2802.709 kb on + strand, within yfcEat 2802.714 kb on - strand, within yfcEat 2802.718 kb on + strandat 2802.740 kb on + strandat 2802.740 kb on + strandat 2802.773 kb on + strandat 2802.851 kb on + strandat 2802.866 kb on + strandat 2802.948 kb on + strand, within yfcDat 2802.948 kb on + strand, within yfcDat 2802.948 kb on + strand, within yfcDat 2802.948 kb on + strand, within yfcDat 2802.948 kb on + strand, within yfcDat 2802.948 kb on + strand, within yfcDat 2802.949 kb on - strand, within yfcDat 2803.027 kb on + strand, within yfcDat 2803.028 kb on - strand, within yfcDat 2803.405 kb on - strandat 2803.450 kb on + strandat 2803.451 kb on - strandat 2803.451 kb on - strandat 2803.451 kb on - strandat 2803.453 kb on + strandat 2803.454 kb on - strandat 2803.714 kb on + strand, within yfcCat 2803.714 kb on + strand, within yfcCat 2803.778 kb on - strand, within yfcCat 2803.782 kb on - strand, within yfcCat 2803.904 kb on - strand, within yfcCat 2803.904 kb on - strand, within yfcCat 2804.175 kb on + strand, within yfcCat 2804.334 kb on + strand, within yfcCat 2804.334 kb on + strand, within yfcCat 2804.335 kb on - strand, within yfcCat 2804.335 kb on - strand, within yfcCat 2804.335 kb on - strand, within yfcCat 2804.335 kb on - strand, within yfcCat 2804.335 kb on - strand, within yfcCat 2804.335 kb on - strand, within yfcCat 2804.335 kb on - strand, within yfcC

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECOR27
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2,801,977 - yfcF NOLOHH_14390 0.71 +1.6
2,802,022 + yfcF NOLOHH_14390 0.78 +0.6
2,802,023 - yfcF NOLOHH_14390 0.78 +0.6
2,802,044 - yfcF NOLOHH_14390 0.81 +2.0
2,802,054 + yfcF NOLOHH_14390 0.83 -1.0
2,802,057 + yfcF NOLOHH_14390 0.83 -1.1
2,802,133 + -0.1
2,802,188 + +0.6
2,802,188 + -0.4
2,802,188 + -0.1
2,802,188 + -1.6
2,802,189 - +1.6
2,802,189 - -0.5
2,802,189 - +0.4
2,802,193 + +0.1
2,802,193 + -0.4
2,802,410 + yfcE NOLOHH_14395 0.35 +1.2
2,802,410 + yfcE NOLOHH_14395 0.35 +0.0
2,802,410 + yfcE NOLOHH_14395 0.35 +0.6
2,802,410 + yfcE NOLOHH_14395 0.35 -0.1
2,802,410 + yfcE NOLOHH_14395 0.35 -0.2
2,802,410 + yfcE NOLOHH_14395 0.35 -0.4
2,802,410 + yfcE NOLOHH_14395 0.35 -1.0
2,802,411 - yfcE NOLOHH_14395 0.35 -1.0
2,802,411 - yfcE NOLOHH_14395 0.35 -1.4
2,802,411 - yfcE NOLOHH_14395 0.35 -0.4
2,802,496 + yfcE NOLOHH_14395 0.50 +1.3
2,802,496 + yfcE NOLOHH_14395 0.50 +0.0
2,802,496 + yfcE NOLOHH_14395 0.50 -0.6
2,802,566 - yfcE NOLOHH_14395 0.63 -1.0
2,802,589 - yfcE NOLOHH_14395 0.67 +0.6
2,802,687 + yfcE NOLOHH_14395 0.85 -1.4
2,802,709 + yfcE NOLOHH_14395 0.89 -1.2
2,802,714 - yfcE NOLOHH_14395 0.90 -2.2
2,802,718 + +0.3
2,802,740 + -0.3
2,802,740 + +1.6
2,802,773 + -1.0
2,802,851 + -0.1
2,802,866 + -0.5
2,802,948 + yfcD NOLOHH_14400 0.22 -0.1
2,802,948 + yfcD NOLOHH_14400 0.22 -0.8
2,802,948 + yfcD NOLOHH_14400 0.22 -1.7
2,802,948 + yfcD NOLOHH_14400 0.22 +0.6
2,802,948 + yfcD NOLOHH_14400 0.22 -0.4
2,802,948 + yfcD NOLOHH_14400 0.22 -1.0
2,802,949 - yfcD NOLOHH_14400 0.22 -1.7
2,803,027 + yfcD NOLOHH_14400 0.37 -1.7
2,803,028 - yfcD NOLOHH_14400 0.37 -2.2
2,803,405 - +0.6
2,803,450 + +0.3
2,803,451 - +0.6
2,803,451 - +0.6
2,803,451 - -0.4
2,803,453 + +0.0
2,803,454 - +0.6
2,803,714 + yfcC NOLOHH_14405 0.21 +1.6
2,803,714 + yfcC NOLOHH_14405 0.21 -0.6
2,803,778 - yfcC NOLOHH_14405 0.25 +0.2
2,803,782 - yfcC NOLOHH_14405 0.26 +1.6
2,803,904 - yfcC NOLOHH_14405 0.34 +0.3
2,803,904 - yfcC NOLOHH_14405 0.34 +1.2
2,804,175 + yfcC NOLOHH_14405 0.52 +0.1
2,804,334 + yfcC NOLOHH_14405 0.63 +1.2
2,804,334 + yfcC NOLOHH_14405 0.63 -0.4
2,804,335 - yfcC NOLOHH_14405 0.63 -1.0
2,804,335 - yfcC NOLOHH_14405 0.63 -0.6
2,804,335 - yfcC NOLOHH_14405 0.63 +0.4
2,804,335 - yfcC NOLOHH_14405 0.63 -1.0
2,804,335 - yfcC NOLOHH_14405 0.63 +0.0
2,804,335 - yfcC NOLOHH_14405 0.63 +0.6
2,804,335 - yfcC NOLOHH_14405 0.63 +0.3

Or see this region's nucleotide sequence