Experiment: Control_ECOR27
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rpnB and yfcH are separated by 47 nucleotides yfcH and folX are separated by 20 nucleotides folX and yfcG are separated by 56 nucleotides yfcG and yfcF are separated by 135 nucleotides
NOLOHH_14370: rpnB - recombination-promoting nuclease RpnB, at 2,798,453 to 2,799,355
rpnB
NOLOHH_14375: yfcH - Epimerase family protein YfcH, at 2,799,403 to 2,800,296
yfcH
NOLOHH_14380: folX - dihydroneopterin triphosphate 2'-epimerase, at 2,800,317 to 2,800,679
folX
NOLOHH_14385: yfcG - GSH-dependent disulfide bond oxidoreductase, at 2,800,736 to 2,801,383
yfcG
NOLOHH_14390: yfcF - glutathione transferase, at 2,801,519 to 2,802,163
yfcF
Position (kb)
2800
2801 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2799.500 kb on - strand, within yfcH at 2799.500 kb on - strand, within yfcH at 2799.503 kb on - strand, within yfcH at 2799.636 kb on + strand, within yfcH at 2799.637 kb on - strand, within yfcH at 2799.637 kb on - strand, within yfcH at 2799.688 kb on - strand, within yfcH at 2799.935 kb on - strand, within yfcH at 2799.935 kb on - strand, within yfcH at 2799.935 kb on - strand, within yfcH at 2799.935 kb on - strand, within yfcH at 2799.944 kb on + strand, within yfcH at 2799.944 kb on + strand, within yfcH at 2799.945 kb on - strand, within yfcH at 2800.288 kb on + strand at 2800.289 kb on - strand at 2800.289 kb on - strand at 2800.289 kb on - strand at 2800.289 kb on - strand at 2800.289 kb on - strand at 2800.371 kb on + strand, within folX at 2800.372 kb on - strand, within folX at 2800.372 kb on - strand, within folX at 2800.397 kb on - strand, within folX at 2800.477 kb on - strand, within folX at 2800.477 kb on - strand, within folX at 2800.510 kb on + strand, within folX at 2800.527 kb on - strand, within folX at 2800.529 kb on + strand, within folX at 2800.529 kb on + strand, within folX at 2800.617 kb on - strand, within folX at 2800.617 kb on - strand, within folX at 2800.632 kb on - strand, within folX at 2800.635 kb on + strand, within folX at 2800.650 kb on + strand at 2800.703 kb on + strand at 2800.704 kb on - strand at 2800.713 kb on + strand at 2800.738 kb on - strand at 2800.773 kb on - strand at 2800.773 kb on - strand at 2800.836 kb on + strand, within yfcG at 2800.908 kb on + strand, within yfcG at 2800.909 kb on - strand, within yfcG at 2800.909 kb on - strand, within yfcG at 2800.955 kb on + strand, within yfcG at 2800.956 kb on - strand, within yfcG at 2800.956 kb on - strand, within yfcG at 2800.997 kb on - strand, within yfcG at 2801.070 kb on - strand, within yfcG at 2801.091 kb on - strand, within yfcG at 2801.297 kb on - strand, within yfcG at 2801.297 kb on - strand, within yfcG at 2801.370 kb on + strand at 2801.421 kb on + strand at 2801.440 kb on + strand at 2801.441 kb on - strand at 2801.449 kb on - strand at 2801.481 kb on + strand at 2801.481 kb on + strand at 2801.481 kb on + strand at 2801.482 kb on - strand at 2801.482 kb on - strand at 2801.489 kb on + strand at 2801.503 kb on + strand at 2801.517 kb on + strand at 2801.518 kb on - strand at 2801.518 kb on - strand at 2801.518 kb on - strand at 2801.518 kb on - strand at 2801.518 kb on - strand at 2801.570 kb on + strand at 2801.571 kb on - strand at 2801.571 kb on - strand at 2801.571 kb on - strand at 2801.571 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECOR27 remove 2,799,500 - yfcH NOLOHH_14375 0.11 +1.0 2,799,500 - yfcH NOLOHH_14375 0.11 -1.7 2,799,503 - yfcH NOLOHH_14375 0.11 +0.0 2,799,636 + yfcH NOLOHH_14375 0.26 -1.4 2,799,637 - yfcH NOLOHH_14375 0.26 +1.0 2,799,637 - yfcH NOLOHH_14375 0.26 +0.6 2,799,688 - yfcH NOLOHH_14375 0.32 +1.1 2,799,935 - yfcH NOLOHH_14375 0.60 +1.9 2,799,935 - yfcH NOLOHH_14375 0.60 +1.6 2,799,935 - yfcH NOLOHH_14375 0.60 +0.6 2,799,935 - yfcH NOLOHH_14375 0.60 +2.3 2,799,944 + yfcH NOLOHH_14375 0.61 +1.2 2,799,944 + yfcH NOLOHH_14375 0.61 -1.4 2,799,945 - yfcH NOLOHH_14375 0.61 -0.1 2,800,288 + -0.4 2,800,289 - -0.4 2,800,289 - -0.6 2,800,289 - +0.1 2,800,289 - +0.3 2,800,289 - +0.2 2,800,371 + folX NOLOHH_14380 0.15 -0.4 2,800,372 - folX NOLOHH_14380 0.15 -1.1 2,800,372 - folX NOLOHH_14380 0.15 -1.4 2,800,397 - folX NOLOHH_14380 0.22 +0.0 2,800,477 - folX NOLOHH_14380 0.44 +2.9 2,800,477 - folX NOLOHH_14380 0.44 -2.7 2,800,510 + folX NOLOHH_14380 0.53 -0.7 2,800,527 - folX NOLOHH_14380 0.58 -0.6 2,800,529 + folX NOLOHH_14380 0.58 -0.7 2,800,529 + folX NOLOHH_14380 0.58 +0.0 2,800,617 - folX NOLOHH_14380 0.83 +0.8 2,800,617 - folX NOLOHH_14380 0.83 -0.2 2,800,632 - folX NOLOHH_14380 0.87 +0.6 2,800,635 + folX NOLOHH_14380 0.88 -1.4 2,800,650 + -0.7 2,800,703 + +0.2 2,800,704 - +1.2 2,800,713 + -0.4 2,800,738 - +1.5 2,800,773 - -1.2 2,800,773 - -0.8 2,800,836 + yfcG NOLOHH_14385 0.15 -0.1 2,800,908 + yfcG NOLOHH_14385 0.27 -1.1 2,800,909 - yfcG NOLOHH_14385 0.27 -0.4 2,800,909 - yfcG NOLOHH_14385 0.27 -0.4 2,800,955 + yfcG NOLOHH_14385 0.34 +0.0 2,800,956 - yfcG NOLOHH_14385 0.34 +1.6 2,800,956 - yfcG NOLOHH_14385 0.34 -1.0 2,800,997 - yfcG NOLOHH_14385 0.40 -1.4 2,801,070 - yfcG NOLOHH_14385 0.52 +0.9 2,801,091 - yfcG NOLOHH_14385 0.55 +1.0 2,801,297 - yfcG NOLOHH_14385 0.87 -0.6 2,801,297 - yfcG NOLOHH_14385 0.87 -1.2 2,801,370 + +0.9 2,801,421 + -0.6 2,801,440 + -0.4 2,801,441 - +1.6 2,801,449 - -0.7 2,801,481 + +0.4 2,801,481 + +0.6 2,801,481 + +0.6 2,801,482 - +0.9 2,801,482 - +0.3 2,801,489 + +0.6 2,801,503 + +0.0 2,801,517 + -0.7 2,801,518 - +2.9 2,801,518 - -1.2 2,801,518 - -1.7 2,801,518 - -1.4 2,801,518 - +2.2 2,801,570 + -0.8 2,801,571 - -0.4 2,801,571 - +1.6 2,801,571 - +1.2 2,801,571 - +0.1
Or see this region's nucleotide sequence