Strain Fitness in Escherichia coli ECOR27 around NOLOHH_14380

Experiment: Control_ECOR27

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrpnB and yfcH are separated by 47 nucleotidesyfcH and folX are separated by 20 nucleotidesfolX and yfcG are separated by 56 nucleotidesyfcG and yfcF are separated by 135 nucleotides NOLOHH_14370: rpnB - recombination-promoting nuclease RpnB, at 2,798,453 to 2,799,355 rpnB NOLOHH_14375: yfcH - Epimerase family protein YfcH, at 2,799,403 to 2,800,296 yfcH NOLOHH_14380: folX - dihydroneopterin triphosphate 2'-epimerase, at 2,800,317 to 2,800,679 folX NOLOHH_14385: yfcG - GSH-dependent disulfide bond oxidoreductase, at 2,800,736 to 2,801,383 yfcG NOLOHH_14390: yfcF - glutathione transferase, at 2,801,519 to 2,802,163 yfcF Position (kb) 2800 2801Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2799.500 kb on - strand, within yfcHat 2799.500 kb on - strand, within yfcHat 2799.503 kb on - strand, within yfcHat 2799.636 kb on + strand, within yfcHat 2799.637 kb on - strand, within yfcHat 2799.637 kb on - strand, within yfcHat 2799.688 kb on - strand, within yfcHat 2799.935 kb on - strand, within yfcHat 2799.935 kb on - strand, within yfcHat 2799.935 kb on - strand, within yfcHat 2799.935 kb on - strand, within yfcHat 2799.944 kb on + strand, within yfcHat 2799.944 kb on + strand, within yfcHat 2799.945 kb on - strand, within yfcHat 2800.288 kb on + strandat 2800.289 kb on - strandat 2800.289 kb on - strandat 2800.289 kb on - strandat 2800.289 kb on - strandat 2800.289 kb on - strandat 2800.371 kb on + strand, within folXat 2800.372 kb on - strand, within folXat 2800.372 kb on - strand, within folXat 2800.397 kb on - strand, within folXat 2800.477 kb on - strand, within folXat 2800.477 kb on - strand, within folXat 2800.510 kb on + strand, within folXat 2800.527 kb on - strand, within folXat 2800.529 kb on + strand, within folXat 2800.529 kb on + strand, within folXat 2800.617 kb on - strand, within folXat 2800.617 kb on - strand, within folXat 2800.632 kb on - strand, within folXat 2800.635 kb on + strand, within folXat 2800.650 kb on + strandat 2800.703 kb on + strandat 2800.704 kb on - strandat 2800.713 kb on + strandat 2800.738 kb on - strandat 2800.773 kb on - strandat 2800.773 kb on - strandat 2800.836 kb on + strand, within yfcGat 2800.908 kb on + strand, within yfcGat 2800.909 kb on - strand, within yfcGat 2800.909 kb on - strand, within yfcGat 2800.955 kb on + strand, within yfcGat 2800.956 kb on - strand, within yfcGat 2800.956 kb on - strand, within yfcGat 2800.997 kb on - strand, within yfcGat 2801.070 kb on - strand, within yfcGat 2801.091 kb on - strand, within yfcGat 2801.297 kb on - strand, within yfcGat 2801.297 kb on - strand, within yfcGat 2801.370 kb on + strandat 2801.421 kb on + strandat 2801.440 kb on + strandat 2801.441 kb on - strandat 2801.449 kb on - strandat 2801.481 kb on + strandat 2801.481 kb on + strandat 2801.481 kb on + strandat 2801.482 kb on - strandat 2801.482 kb on - strandat 2801.489 kb on + strandat 2801.503 kb on + strandat 2801.517 kb on + strandat 2801.518 kb on - strandat 2801.518 kb on - strandat 2801.518 kb on - strandat 2801.518 kb on - strandat 2801.518 kb on - strandat 2801.570 kb on + strandat 2801.571 kb on - strandat 2801.571 kb on - strandat 2801.571 kb on - strandat 2801.571 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECOR27
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2,799,500 - yfcH NOLOHH_14375 0.11 +1.0
2,799,500 - yfcH NOLOHH_14375 0.11 -1.7
2,799,503 - yfcH NOLOHH_14375 0.11 +0.0
2,799,636 + yfcH NOLOHH_14375 0.26 -1.4
2,799,637 - yfcH NOLOHH_14375 0.26 +1.0
2,799,637 - yfcH NOLOHH_14375 0.26 +0.6
2,799,688 - yfcH NOLOHH_14375 0.32 +1.1
2,799,935 - yfcH NOLOHH_14375 0.60 +1.9
2,799,935 - yfcH NOLOHH_14375 0.60 +1.6
2,799,935 - yfcH NOLOHH_14375 0.60 +0.6
2,799,935 - yfcH NOLOHH_14375 0.60 +2.3
2,799,944 + yfcH NOLOHH_14375 0.61 +1.2
2,799,944 + yfcH NOLOHH_14375 0.61 -1.4
2,799,945 - yfcH NOLOHH_14375 0.61 -0.1
2,800,288 + -0.4
2,800,289 - -0.4
2,800,289 - -0.6
2,800,289 - +0.1
2,800,289 - +0.3
2,800,289 - +0.2
2,800,371 + folX NOLOHH_14380 0.15 -0.4
2,800,372 - folX NOLOHH_14380 0.15 -1.1
2,800,372 - folX NOLOHH_14380 0.15 -1.4
2,800,397 - folX NOLOHH_14380 0.22 +0.0
2,800,477 - folX NOLOHH_14380 0.44 +2.9
2,800,477 - folX NOLOHH_14380 0.44 -2.7
2,800,510 + folX NOLOHH_14380 0.53 -0.7
2,800,527 - folX NOLOHH_14380 0.58 -0.6
2,800,529 + folX NOLOHH_14380 0.58 -0.7
2,800,529 + folX NOLOHH_14380 0.58 +0.0
2,800,617 - folX NOLOHH_14380 0.83 +0.8
2,800,617 - folX NOLOHH_14380 0.83 -0.2
2,800,632 - folX NOLOHH_14380 0.87 +0.6
2,800,635 + folX NOLOHH_14380 0.88 -1.4
2,800,650 + -0.7
2,800,703 + +0.2
2,800,704 - +1.2
2,800,713 + -0.4
2,800,738 - +1.5
2,800,773 - -1.2
2,800,773 - -0.8
2,800,836 + yfcG NOLOHH_14385 0.15 -0.1
2,800,908 + yfcG NOLOHH_14385 0.27 -1.1
2,800,909 - yfcG NOLOHH_14385 0.27 -0.4
2,800,909 - yfcG NOLOHH_14385 0.27 -0.4
2,800,955 + yfcG NOLOHH_14385 0.34 +0.0
2,800,956 - yfcG NOLOHH_14385 0.34 +1.6
2,800,956 - yfcG NOLOHH_14385 0.34 -1.0
2,800,997 - yfcG NOLOHH_14385 0.40 -1.4
2,801,070 - yfcG NOLOHH_14385 0.52 +0.9
2,801,091 - yfcG NOLOHH_14385 0.55 +1.0
2,801,297 - yfcG NOLOHH_14385 0.87 -0.6
2,801,297 - yfcG NOLOHH_14385 0.87 -1.2
2,801,370 + +0.9
2,801,421 + -0.6
2,801,440 + -0.4
2,801,441 - +1.6
2,801,449 - -0.7
2,801,481 + +0.4
2,801,481 + +0.6
2,801,481 + +0.6
2,801,482 - +0.9
2,801,482 - +0.3
2,801,489 + +0.6
2,801,503 + +0.0
2,801,517 + -0.7
2,801,518 - +2.9
2,801,518 - -1.2
2,801,518 - -1.7
2,801,518 - -1.4
2,801,518 - +2.2
2,801,570 + -0.8
2,801,571 - -0.4
2,801,571 - +1.6
2,801,571 - +1.2
2,801,571 - +0.1

Or see this region's nucleotide sequence