Experiment: Control_ECOR27
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hisJ and hisQ are separated by 89 nucleotides hisQ and hisM overlap by 4 nucleotides hisM and hisP are separated by 7 nucleotides hisP and rpnB are separated by 196 nucleotides
NOLOHH_14350: hisJ - histidine ABC transporter substrate-binding protein HisJ, at 2,795,204 to 2,795,986
hisJ
NOLOHH_14355: hisQ - histidine ABC transporter permease HisQ, at 2,796,076 to 2,796,762
hisQ
NOLOHH_14360: hisM - Histidine transport system permease protein HisM, at 2,796,759 to 2,797,475
hisM
NOLOHH_14365: hisP - histidine ABC transporter ATP-binding protein HisP, at 2,797,483 to 2,798,256
hisP
NOLOHH_14370: rpnB - recombination-promoting nuclease RpnB, at 2,798,453 to 2,799,355
rpnB
Position (kb)
2796
2797
2798 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2795.824 kb on + strand, within hisJ at 2795.936 kb on + strand at 2795.946 kb on + strand at 2796.046 kb on + strand at 2796.047 kb on - strand at 2796.158 kb on + strand, within hisQ at 2796.229 kb on + strand, within hisQ at 2796.343 kb on - strand, within hisQ at 2796.366 kb on + strand, within hisQ at 2796.366 kb on + strand, within hisQ at 2796.385 kb on + strand, within hisQ at 2796.394 kb on + strand, within hisQ at 2796.394 kb on + strand, within hisQ at 2796.444 kb on + strand, within hisQ at 2796.446 kb on + strand, within hisQ at 2796.446 kb on + strand, within hisQ at 2796.446 kb on + strand, within hisQ at 2796.446 kb on + strand, within hisQ at 2796.446 kb on + strand, within hisQ at 2796.446 kb on + strand, within hisQ at 2796.447 kb on - strand, within hisQ at 2796.676 kb on + strand, within hisQ at 2796.677 kb on - strand, within hisQ at 2796.849 kb on - strand, within hisM at 2796.944 kb on + strand, within hisM at 2796.951 kb on - strand, within hisM at 2796.972 kb on + strand, within hisM at 2796.993 kb on + strand, within hisM at 2797.005 kb on + strand, within hisM at 2797.005 kb on + strand, within hisM at 2797.105 kb on - strand, within hisM at 2797.278 kb on - strand, within hisM at 2797.332 kb on - strand, within hisM at 2797.390 kb on + strand, within hisM at 2797.391 kb on - strand, within hisM at 2797.401 kb on + strand, within hisM at 2797.401 kb on + strand, within hisM at 2797.401 kb on + strand, within hisM at 2797.402 kb on - strand, within hisM at 2797.402 kb on - strand, within hisM at 2797.479 kb on + strand at 2797.479 kb on + strand at 2797.583 kb on + strand, within hisP at 2797.635 kb on + strand, within hisP at 2797.800 kb on + strand, within hisP at 2798.019 kb on + strand, within hisP at 2798.019 kb on + strand, within hisP at 2798.020 kb on - strand, within hisP at 2798.061 kb on + strand, within hisP at 2798.064 kb on + strand, within hisP at 2798.171 kb on + strand, within hisP at 2798.429 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECOR27 remove 2,795,824 + hisJ NOLOHH_14350 0.79 +0.2 2,795,936 + -0.4 2,795,946 + +0.8 2,796,046 + +0.4 2,796,047 - +1.3 2,796,158 + hisQ NOLOHH_14355 0.12 +2.9 2,796,229 + hisQ NOLOHH_14355 0.22 +2.2 2,796,343 - hisQ NOLOHH_14355 0.39 +0.6 2,796,366 + hisQ NOLOHH_14355 0.42 -0.4 2,796,366 + hisQ NOLOHH_14355 0.42 -1.4 2,796,385 + hisQ NOLOHH_14355 0.45 +0.6 2,796,394 + hisQ NOLOHH_14355 0.46 +0.0 2,796,394 + hisQ NOLOHH_14355 0.46 -1.0 2,796,444 + hisQ NOLOHH_14355 0.54 -0.4 2,796,446 + hisQ NOLOHH_14355 0.54 +0.3 2,796,446 + hisQ NOLOHH_14355 0.54 -1.0 2,796,446 + hisQ NOLOHH_14355 0.54 +0.6 2,796,446 + hisQ NOLOHH_14355 0.54 -1.9 2,796,446 + hisQ NOLOHH_14355 0.54 +0.9 2,796,446 + hisQ NOLOHH_14355 0.54 +0.6 2,796,447 - hisQ NOLOHH_14355 0.54 +0.6 2,796,676 + hisQ NOLOHH_14355 0.87 +1.6 2,796,677 - hisQ NOLOHH_14355 0.87 +1.0 2,796,849 - hisM NOLOHH_14360 0.13 +0.6 2,796,944 + hisM NOLOHH_14360 0.26 -0.4 2,796,951 - hisM NOLOHH_14360 0.27 -0.4 2,796,972 + hisM NOLOHH_14360 0.30 +1.6 2,796,993 + hisM NOLOHH_14360 0.33 +0.6 2,797,005 + hisM NOLOHH_14360 0.34 -0.7 2,797,005 + hisM NOLOHH_14360 0.34 -0.4 2,797,105 - hisM NOLOHH_14360 0.48 +0.3 2,797,278 - hisM NOLOHH_14360 0.72 -1.4 2,797,332 - hisM NOLOHH_14360 0.80 +1.4 2,797,390 + hisM NOLOHH_14360 0.88 -1.6 2,797,391 - hisM NOLOHH_14360 0.88 +0.6 2,797,401 + hisM NOLOHH_14360 0.90 -1.0 2,797,401 + hisM NOLOHH_14360 0.90 +0.2 2,797,401 + hisM NOLOHH_14360 0.90 +0.0 2,797,402 - hisM NOLOHH_14360 0.90 -2.2 2,797,402 - hisM NOLOHH_14360 0.90 +0.6 2,797,479 + -1.0 2,797,479 + +0.0 2,797,583 + hisP NOLOHH_14365 0.13 -1.2 2,797,635 + hisP NOLOHH_14365 0.20 +0.8 2,797,800 + hisP NOLOHH_14365 0.41 +0.6 2,798,019 + hisP NOLOHH_14365 0.69 +1.6 2,798,019 + hisP NOLOHH_14365 0.69 +1.2 2,798,020 - hisP NOLOHH_14365 0.69 +0.0 2,798,061 + hisP NOLOHH_14365 0.75 +0.4 2,798,064 + hisP NOLOHH_14365 0.75 +0.2 2,798,171 + hisP NOLOHH_14365 0.89 -0.4 2,798,429 - +1.6
Or see this region's nucleotide sequence