Strain Fitness in Escherichia coli ECOR27 around NOLOHH_14305

Experiment: Control_ECOR27

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntusg and truA overlap by 1 nucleotidestruA and NOLOHH_14310 are separated by 82 nucleotidesNOLOHH_14310 and accD are separated by 155 nucleotides NOLOHH_14300: usg - aspartate-semialdehyde dehydrogenase, at 2,785,343 to 2,786,356 usg NOLOHH_14305: truA - tRNA pseudouridine(38-40) synthase TruA, at 2,786,356 to 2,787,168 truA NOLOHH_14310: NOLOHH_14310 - Protein DedA, at 2,787,251 to 2,787,910 _14310 NOLOHH_14315: accD - acetyl-CoA carboxylase, carboxyltransferase subunit beta, at 2,788,066 to 2,788,980 accD Position (kb) 2786 2787 2788Strain fitness (log2 ratio) -2 -1 0 1 2at 2785.680 kb on + strand, within usgat 2785.680 kb on + strand, within usgat 2785.681 kb on - strand, within usgat 2785.966 kb on + strand, within usgat 2785.988 kb on - strand, within usgat 2786.067 kb on - strand, within usgat 2786.067 kb on - strand, within usgat 2786.153 kb on - strand, within usgat 2786.153 kb on - strand, within usgat 2786.190 kb on + strand, within usgat 2786.236 kb on + strand, within usgat 2786.244 kb on - strand, within usgat 2786.316 kb on + strandat 2786.316 kb on + strandat 2786.345 kb on + strandat 2786.351 kb on + strandat 2786.351 kb on + strandat 2786.354 kb on + strandat 2786.354 kb on + strandat 2786.354 kb on + strandat 2786.419 kb on - strandat 2786.419 kb on - strandat 2786.419 kb on - strandat 2786.422 kb on + strandat 2786.422 kb on + strandat 2786.530 kb on - strand, within truAat 2786.663 kb on + strand, within truAat 2786.664 kb on - strand, within truAat 2786.722 kb on + strand, within truAat 2786.889 kb on + strand, within truAat 2786.896 kb on - strand, within truAat 2786.896 kb on - strand, within truAat 2786.896 kb on - strand, within truAat 2786.896 kb on - strand, within truAat 2786.899 kb on - strand, within truAat 2786.899 kb on - strand, within truAat 2786.920 kb on + strand, within truAat 2786.921 kb on - strand, within truAat 2786.930 kb on + strand, within truAat 2786.934 kb on + strand, within truAat 2786.937 kb on + strand, within truAat 2786.955 kb on - strand, within truAat 2786.961 kb on + strand, within truAat 2786.961 kb on + strand, within truAat 2786.974 kb on - strand, within truAat 2787.091 kb on + strandat 2787.092 kb on - strandat 2787.122 kb on - strandat 2787.175 kb on + strandat 2787.175 kb on + strandat 2787.176 kb on - strandat 2787.208 kb on + strandat 2787.208 kb on + strandat 2787.209 kb on - strandat 2787.209 kb on - strandat 2787.209 kb on - strandat 2787.212 kb on + strandat 2787.213 kb on - strandat 2787.213 kb on - strandat 2787.213 kb on - strandat 2787.233 kb on + strandat 2787.242 kb on + strandat 2787.242 kb on + strandat 2787.243 kb on - strandat 2787.251 kb on - strandat 2787.281 kb on - strandat 2787.323 kb on + strand, within NOLOHH_14310at 2787.324 kb on - strand, within NOLOHH_14310at 2787.338 kb on + strand, within NOLOHH_14310at 2787.339 kb on - strand, within NOLOHH_14310at 2787.466 kb on + strand, within NOLOHH_14310at 2787.518 kb on + strand, within NOLOHH_14310at 2787.519 kb on - strand, within NOLOHH_14310at 2787.519 kb on - strand, within NOLOHH_14310at 2787.519 kb on - strand, within NOLOHH_14310at 2787.587 kb on + strand, within NOLOHH_14310at 2787.725 kb on + strand, within NOLOHH_14310at 2787.726 kb on - strand, within NOLOHH_14310at 2787.726 kb on - strand, within NOLOHH_14310at 2787.768 kb on - strand, within NOLOHH_14310at 2787.814 kb on + strand, within NOLOHH_14310at 2787.847 kb on + strandat 2787.870 kb on + strandat 2787.871 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECOR27
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2,785,680 + usg NOLOHH_14300 0.33 -1.6
2,785,680 + usg NOLOHH_14300 0.33 +0.6
2,785,681 - usg NOLOHH_14300 0.33 -0.4
2,785,966 + usg NOLOHH_14300 0.61 +0.0
2,785,988 - usg NOLOHH_14300 0.64 -0.4
2,786,067 - usg NOLOHH_14300 0.71 -0.4
2,786,067 - usg NOLOHH_14300 0.71 +0.6
2,786,153 - usg NOLOHH_14300 0.80 +0.2
2,786,153 - usg NOLOHH_14300 0.80 +0.6
2,786,190 + usg NOLOHH_14300 0.84 -1.0
2,786,236 + usg NOLOHH_14300 0.88 -0.5
2,786,244 - usg NOLOHH_14300 0.89 +0.6
2,786,316 + -1.0
2,786,316 + -0.4
2,786,345 + -1.0
2,786,351 + -1.0
2,786,351 + +1.6
2,786,354 + -1.0
2,786,354 + +0.6
2,786,354 + +0.2
2,786,419 - -0.4
2,786,419 - -0.4
2,786,419 - +0.6
2,786,422 + -1.0
2,786,422 + -1.0
2,786,530 - truA NOLOHH_14305 0.21 +1.6
2,786,663 + truA NOLOHH_14305 0.38 +0.6
2,786,664 - truA NOLOHH_14305 0.38 +0.6
2,786,722 + truA NOLOHH_14305 0.45 -1.7
2,786,889 + truA NOLOHH_14305 0.66 -1.4
2,786,896 - truA NOLOHH_14305 0.66 -0.4
2,786,896 - truA NOLOHH_14305 0.66 -1.2
2,786,896 - truA NOLOHH_14305 0.66 +0.6
2,786,896 - truA NOLOHH_14305 0.66 -0.4
2,786,899 - truA NOLOHH_14305 0.67 +0.3
2,786,899 - truA NOLOHH_14305 0.67 -1.7
2,786,920 + truA NOLOHH_14305 0.69 +0.6
2,786,921 - truA NOLOHH_14305 0.69 +0.6
2,786,930 + truA NOLOHH_14305 0.71 -1.4
2,786,934 + truA NOLOHH_14305 0.71 +1.6
2,786,937 + truA NOLOHH_14305 0.71 +1.6
2,786,955 - truA NOLOHH_14305 0.74 -1.0
2,786,961 + truA NOLOHH_14305 0.74 -0.4
2,786,961 + truA NOLOHH_14305 0.74 -2.0
2,786,974 - truA NOLOHH_14305 0.76 -1.0
2,787,091 + -2.6
2,787,092 - -1.0
2,787,122 - +0.6
2,787,175 + +0.3
2,787,175 + +1.1
2,787,176 - -1.4
2,787,208 + -0.7
2,787,208 + -0.8
2,787,209 - +2.1
2,787,209 - +0.6
2,787,209 - -0.1
2,787,212 + +1.6
2,787,213 - +0.6
2,787,213 - +0.6
2,787,213 - +0.6
2,787,233 + +0.6
2,787,242 + -0.4
2,787,242 + +1.0
2,787,243 - -0.4
2,787,251 - +0.3
2,787,281 - -0.6
2,787,323 + NOLOHH_14310 0.11 +0.6
2,787,324 - NOLOHH_14310 0.11 -2.4
2,787,338 + NOLOHH_14310 0.13 +0.6
2,787,339 - NOLOHH_14310 0.13 +0.7
2,787,466 + NOLOHH_14310 0.33 +0.0
2,787,518 + NOLOHH_14310 0.40 -0.1
2,787,519 - NOLOHH_14310 0.41 -0.4
2,787,519 - NOLOHH_14310 0.41 +1.4
2,787,519 - NOLOHH_14310 0.41 +0.6
2,787,587 + NOLOHH_14310 0.51 -1.4
2,787,725 + NOLOHH_14310 0.72 +0.6
2,787,726 - NOLOHH_14310 0.72 +1.2
2,787,726 - NOLOHH_14310 0.72 -0.0
2,787,768 - NOLOHH_14310 0.78 +0.0
2,787,814 + NOLOHH_14310 0.85 -0.1
2,787,847 + -0.4
2,787,870 + +0.6
2,787,871 - -1.0

Or see this region's nucleotide sequence