Strain Fitness in Escherichia coli ECOR27 around NOLOHH_14270

Experiment: Control_ECOR27

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyfcA and epmC overlap by 1 nucleotidesepmC and yfcL are separated by 33 nucleotidesyfcL and mnmC are separated by 55 nucleotides NOLOHH_14260: yfcA - putative membrane transporter protein YfcA, at 2,776,497 to 2,777,306 yfcA NOLOHH_14265: epmC - elongation factor P hydroxylase, at 2,777,306 to 2,777,854 epmC NOLOHH_14270: yfcL - Uncharacterized protein YfcL, at 2,777,888 to 2,778,166 yfcL NOLOHH_14275: mnmC - bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC, at 2,778,222 to 2,780,228 mnmC Position (kb) 2777 2778 2779Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2776.914 kb on + strand, within yfcAat 2776.914 kb on + strand, within yfcAat 2776.914 kb on + strand, within yfcAat 2776.922 kb on - strand, within yfcAat 2777.012 kb on + strand, within yfcAat 2777.012 kb on + strand, within yfcAat 2777.078 kb on + strand, within yfcAat 2777.089 kb on + strand, within yfcAat 2777.255 kb on - strandat 2777.255 kb on - strandat 2777.259 kb on + strandat 2777.259 kb on + strandat 2777.260 kb on - strandat 2777.314 kb on + strandat 2777.386 kb on + strand, within epmCat 2777.408 kb on + strand, within epmCat 2777.408 kb on + strand, within epmCat 2777.408 kb on + strand, within epmCat 2777.430 kb on + strand, within epmCat 2777.435 kb on + strand, within epmCat 2777.435 kb on + strand, within epmCat 2777.436 kb on - strand, within epmCat 2777.465 kb on + strand, within epmCat 2777.466 kb on - strand, within epmCat 2777.500 kb on + strand, within epmCat 2777.871 kb on + strandat 2777.871 kb on + strandat 2777.871 kb on + strandat 2777.871 kb on + strandat 2777.872 kb on - strandat 2777.975 kb on + strand, within yfcLat 2777.976 kb on - strand, within yfcLat 2778.045 kb on + strand, within yfcLat 2778.046 kb on - strand, within yfcLat 2778.049 kb on + strand, within yfcLat 2778.049 kb on + strand, within yfcLat 2778.049 kb on + strand, within yfcLat 2778.049 kb on + strand, within yfcLat 2778.049 kb on + strand, within yfcLat 2778.049 kb on + strand, within yfcLat 2778.049 kb on + strand, within yfcLat 2778.049 kb on + strand, within yfcLat 2778.050 kb on - strand, within yfcLat 2778.050 kb on - strand, within yfcLat 2778.164 kb on + strandat 2778.164 kb on + strandat 2778.165 kb on - strandat 2778.165 kb on - strandat 2778.168 kb on + strandat 2778.168 kb on + strandat 2778.168 kb on + strandat 2778.168 kb on + strandat 2778.273 kb on - strandat 2778.297 kb on - strandat 2778.461 kb on - strand, within mnmCat 2778.461 kb on - strand, within mnmCat 2778.668 kb on - strand, within mnmCat 2778.681 kb on - strand, within mnmCat 2778.800 kb on - strand, within mnmCat 2778.800 kb on - strand, within mnmCat 2778.800 kb on - strand, within mnmCat 2778.867 kb on - strand, within mnmCat 2778.947 kb on - strand, within mnmCat 2779.034 kb on + strand, within mnmCat 2779.035 kb on - strand, within mnmCat 2779.035 kb on - strand, within mnmCat 2779.035 kb on - strand, within mnmCat 2779.035 kb on - strand, within mnmCat 2779.035 kb on - strand, within mnmCat 2779.143 kb on - strand, within mnmCat 2779.143 kb on - strand, within mnmC

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECOR27
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2,776,914 + yfcA NOLOHH_14260 0.51 +0.4
2,776,914 + yfcA NOLOHH_14260 0.51 -1.0
2,776,914 + yfcA NOLOHH_14260 0.51 +0.6
2,776,922 - yfcA NOLOHH_14260 0.52 -0.1
2,777,012 + yfcA NOLOHH_14260 0.64 +0.6
2,777,012 + yfcA NOLOHH_14260 0.64 +3.6
2,777,078 + yfcA NOLOHH_14260 0.72 -1.7
2,777,089 + yfcA NOLOHH_14260 0.73 +0.1
2,777,255 - -1.4
2,777,255 - +1.2
2,777,259 + +0.2
2,777,259 + -0.1
2,777,260 - -0.4
2,777,314 + +0.3
2,777,386 + epmC NOLOHH_14265 0.15 -1.7
2,777,408 + epmC NOLOHH_14265 0.19 -0.8
2,777,408 + epmC NOLOHH_14265 0.19 +0.0
2,777,408 + epmC NOLOHH_14265 0.19 -2.0
2,777,430 + epmC NOLOHH_14265 0.23 -0.6
2,777,435 + epmC NOLOHH_14265 0.23 +1.6
2,777,435 + epmC NOLOHH_14265 0.23 +1.2
2,777,436 - epmC NOLOHH_14265 0.24 -1.4
2,777,465 + epmC NOLOHH_14265 0.29 +1.1
2,777,466 - epmC NOLOHH_14265 0.29 +0.6
2,777,500 + epmC NOLOHH_14265 0.35 +1.3
2,777,871 + -0.1
2,777,871 + -0.9
2,777,871 + -0.7
2,777,871 + +0.6
2,777,872 - +0.6
2,777,975 + yfcL NOLOHH_14270 0.31 -0.3
2,777,976 - yfcL NOLOHH_14270 0.32 +1.6
2,778,045 + yfcL NOLOHH_14270 0.56 -1.0
2,778,046 - yfcL NOLOHH_14270 0.57 +1.3
2,778,049 + yfcL NOLOHH_14270 0.58 +1.2
2,778,049 + yfcL NOLOHH_14270 0.58 -0.6
2,778,049 + yfcL NOLOHH_14270 0.58 -1.0
2,778,049 + yfcL NOLOHH_14270 0.58 -0.4
2,778,049 + yfcL NOLOHH_14270 0.58 -2.0
2,778,049 + yfcL NOLOHH_14270 0.58 -1.7
2,778,049 + yfcL NOLOHH_14270 0.58 +1.4
2,778,049 + yfcL NOLOHH_14270 0.58 -2.2
2,778,050 - yfcL NOLOHH_14270 0.58 +0.6
2,778,050 - yfcL NOLOHH_14270 0.58 +0.6
2,778,164 + -0.8
2,778,164 + +2.6
2,778,165 - -1.0
2,778,165 - -0.4
2,778,168 + +0.6
2,778,168 + +0.3
2,778,168 + +0.6
2,778,168 + +0.9
2,778,273 - +1.2
2,778,297 - -2.2
2,778,461 - mnmC NOLOHH_14275 0.12 +1.6
2,778,461 - mnmC NOLOHH_14275 0.12 +0.6
2,778,668 - mnmC NOLOHH_14275 0.22 -0.4
2,778,681 - mnmC NOLOHH_14275 0.23 +0.3
2,778,800 - mnmC NOLOHH_14275 0.29 +1.9
2,778,800 - mnmC NOLOHH_14275 0.29 +1.4
2,778,800 - mnmC NOLOHH_14275 0.29 -0.7
2,778,867 - mnmC NOLOHH_14275 0.32 +1.2
2,778,947 - mnmC NOLOHH_14275 0.36 +0.2
2,779,034 + mnmC NOLOHH_14275 0.40 +0.6
2,779,035 - mnmC NOLOHH_14275 0.41 -1.1
2,779,035 - mnmC NOLOHH_14275 0.41 -0.4
2,779,035 - mnmC NOLOHH_14275 0.41 +0.6
2,779,035 - mnmC NOLOHH_14275 0.41 +0.0
2,779,035 - mnmC NOLOHH_14275 0.41 -0.9
2,779,143 - mnmC NOLOHH_14275 0.46 +0.7
2,779,143 - mnmC NOLOHH_14275 0.46 +0.6

Or see this region's nucleotide sequence