Experiment: Control_ECOR27
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yfcA and epmC overlap by 1 nucleotides epmC and yfcL are separated by 33 nucleotides yfcL and mnmC are separated by 55 nucleotides
NOLOHH_14260: yfcA - putative membrane transporter protein YfcA, at 2,776,497 to 2,777,306
yfcA
NOLOHH_14265: epmC - elongation factor P hydroxylase, at 2,777,306 to 2,777,854
epmC
NOLOHH_14270: yfcL - Uncharacterized protein YfcL, at 2,777,888 to 2,778,166
yfcL
NOLOHH_14275: mnmC - bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC, at 2,778,222 to 2,780,228
mnmC
Position (kb)
2777
2778
2779 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2776.914 kb on + strand, within yfcA at 2776.914 kb on + strand, within yfcA at 2776.914 kb on + strand, within yfcA at 2776.922 kb on - strand, within yfcA at 2777.012 kb on + strand, within yfcA at 2777.012 kb on + strand, within yfcA at 2777.078 kb on + strand, within yfcA at 2777.089 kb on + strand, within yfcA at 2777.255 kb on - strand at 2777.255 kb on - strand at 2777.259 kb on + strand at 2777.259 kb on + strand at 2777.260 kb on - strand at 2777.314 kb on + strand at 2777.386 kb on + strand, within epmC at 2777.408 kb on + strand, within epmC at 2777.408 kb on + strand, within epmC at 2777.408 kb on + strand, within epmC at 2777.430 kb on + strand, within epmC at 2777.435 kb on + strand, within epmC at 2777.435 kb on + strand, within epmC at 2777.436 kb on - strand, within epmC at 2777.465 kb on + strand, within epmC at 2777.466 kb on - strand, within epmC at 2777.500 kb on + strand, within epmC at 2777.871 kb on + strand at 2777.871 kb on + strand at 2777.871 kb on + strand at 2777.871 kb on + strand at 2777.872 kb on - strand at 2777.975 kb on + strand, within yfcL at 2777.976 kb on - strand, within yfcL at 2778.045 kb on + strand, within yfcL at 2778.046 kb on - strand, within yfcL at 2778.049 kb on + strand, within yfcL at 2778.049 kb on + strand, within yfcL at 2778.049 kb on + strand, within yfcL at 2778.049 kb on + strand, within yfcL at 2778.049 kb on + strand, within yfcL at 2778.049 kb on + strand, within yfcL at 2778.049 kb on + strand, within yfcL at 2778.049 kb on + strand, within yfcL at 2778.050 kb on - strand, within yfcL at 2778.050 kb on - strand, within yfcL at 2778.164 kb on + strand at 2778.164 kb on + strand at 2778.165 kb on - strand at 2778.165 kb on - strand at 2778.168 kb on + strand at 2778.168 kb on + strand at 2778.168 kb on + strand at 2778.168 kb on + strand at 2778.273 kb on - strand at 2778.297 kb on - strand at 2778.461 kb on - strand, within mnmC at 2778.461 kb on - strand, within mnmC at 2778.668 kb on - strand, within mnmC at 2778.681 kb on - strand, within mnmC at 2778.800 kb on - strand, within mnmC at 2778.800 kb on - strand, within mnmC at 2778.800 kb on - strand, within mnmC at 2778.867 kb on - strand, within mnmC at 2778.947 kb on - strand, within mnmC at 2779.034 kb on + strand, within mnmC at 2779.035 kb on - strand, within mnmC at 2779.035 kb on - strand, within mnmC at 2779.035 kb on - strand, within mnmC at 2779.035 kb on - strand, within mnmC at 2779.035 kb on - strand, within mnmC at 2779.143 kb on - strand, within mnmC at 2779.143 kb on - strand, within mnmC
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECOR27 remove 2,776,914 + yfcA NOLOHH_14260 0.51 +0.4 2,776,914 + yfcA NOLOHH_14260 0.51 -1.0 2,776,914 + yfcA NOLOHH_14260 0.51 +0.6 2,776,922 - yfcA NOLOHH_14260 0.52 -0.1 2,777,012 + yfcA NOLOHH_14260 0.64 +0.6 2,777,012 + yfcA NOLOHH_14260 0.64 +3.6 2,777,078 + yfcA NOLOHH_14260 0.72 -1.7 2,777,089 + yfcA NOLOHH_14260 0.73 +0.1 2,777,255 - -1.4 2,777,255 - +1.2 2,777,259 + +0.2 2,777,259 + -0.1 2,777,260 - -0.4 2,777,314 + +0.3 2,777,386 + epmC NOLOHH_14265 0.15 -1.7 2,777,408 + epmC NOLOHH_14265 0.19 -0.8 2,777,408 + epmC NOLOHH_14265 0.19 +0.0 2,777,408 + epmC NOLOHH_14265 0.19 -2.0 2,777,430 + epmC NOLOHH_14265 0.23 -0.6 2,777,435 + epmC NOLOHH_14265 0.23 +1.6 2,777,435 + epmC NOLOHH_14265 0.23 +1.2 2,777,436 - epmC NOLOHH_14265 0.24 -1.4 2,777,465 + epmC NOLOHH_14265 0.29 +1.1 2,777,466 - epmC NOLOHH_14265 0.29 +0.6 2,777,500 + epmC NOLOHH_14265 0.35 +1.3 2,777,871 + -0.1 2,777,871 + -0.9 2,777,871 + -0.7 2,777,871 + +0.6 2,777,872 - +0.6 2,777,975 + yfcL NOLOHH_14270 0.31 -0.3 2,777,976 - yfcL NOLOHH_14270 0.32 +1.6 2,778,045 + yfcL NOLOHH_14270 0.56 -1.0 2,778,046 - yfcL NOLOHH_14270 0.57 +1.3 2,778,049 + yfcL NOLOHH_14270 0.58 +1.2 2,778,049 + yfcL NOLOHH_14270 0.58 -0.6 2,778,049 + yfcL NOLOHH_14270 0.58 -1.0 2,778,049 + yfcL NOLOHH_14270 0.58 -0.4 2,778,049 + yfcL NOLOHH_14270 0.58 -2.0 2,778,049 + yfcL NOLOHH_14270 0.58 -1.7 2,778,049 + yfcL NOLOHH_14270 0.58 +1.4 2,778,049 + yfcL NOLOHH_14270 0.58 -2.2 2,778,050 - yfcL NOLOHH_14270 0.58 +0.6 2,778,050 - yfcL NOLOHH_14270 0.58 +0.6 2,778,164 + -0.8 2,778,164 + +2.6 2,778,165 - -1.0 2,778,165 - -0.4 2,778,168 + +0.6 2,778,168 + +0.3 2,778,168 + +0.6 2,778,168 + +0.9 2,778,273 - +1.2 2,778,297 - -2.2 2,778,461 - mnmC NOLOHH_14275 0.12 +1.6 2,778,461 - mnmC NOLOHH_14275 0.12 +0.6 2,778,668 - mnmC NOLOHH_14275 0.22 -0.4 2,778,681 - mnmC NOLOHH_14275 0.23 +0.3 2,778,800 - mnmC NOLOHH_14275 0.29 +1.9 2,778,800 - mnmC NOLOHH_14275 0.29 +1.4 2,778,800 - mnmC NOLOHH_14275 0.29 -0.7 2,778,867 - mnmC NOLOHH_14275 0.32 +1.2 2,778,947 - mnmC NOLOHH_14275 0.36 +0.2 2,779,034 + mnmC NOLOHH_14275 0.40 +0.6 2,779,035 - mnmC NOLOHH_14275 0.41 -1.1 2,779,035 - mnmC NOLOHH_14275 0.41 -0.4 2,779,035 - mnmC NOLOHH_14275 0.41 +0.6 2,779,035 - mnmC NOLOHH_14275 0.41 +0.0 2,779,035 - mnmC NOLOHH_14275 0.41 -0.9 2,779,143 - mnmC NOLOHH_14275 0.46 +0.7 2,779,143 - mnmC NOLOHH_14275 0.46 +0.6
Or see this region's nucleotide sequence