Experiment: Control_ECOR27
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt bamD and rluD are separated by 134 nucleotides rluD and yfiH overlap by 4 nucleotides yfiH and clpB are separated by 129 nucleotides
NOLOHH_12920: bamD - outer membrane protein assembly factor BamD, at 2,501,693 to 2,502,430
bamD
NOLOHH_12925: rluD - 23S rRNA pseudouridine(1911/1915/1917) synthase RluD, at 2,502,565 to 2,503,545
rluD
NOLOHH_12930: yfiH - purine nucleoside phosphorylase YfiH, at 2,503,542 to 2,504,273
yfiH
NOLOHH_12940: clpB - ATP-dependent chaperone ClpB, at 2,504,403 to 2,506,976
clpB
Position (kb)
2502
2503
2504 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2501.679 kb on - strand at 2501.695 kb on - strand at 2501.695 kb on - strand at 2501.698 kb on + strand at 2501.698 kb on + strand at 2501.699 kb on - strand at 2501.699 kb on - strand at 2501.699 kb on - strand at 2501.699 kb on - strand at 2502.456 kb on - strand at 2502.456 kb on - strand at 2502.456 kb on - strand at 2502.499 kb on - strand at 2502.499 kb on - strand at 2502.499 kb on - strand at 2502.504 kb on - strand at 2502.511 kb on + strand at 2502.511 kb on + strand at 2502.511 kb on + strand at 2502.511 kb on + strand at 2502.511 kb on + strand at 2502.511 kb on + strand at 2502.511 kb on + strand at 2502.512 kb on - strand at 2502.512 kb on - strand at 2502.512 kb on - strand at 2502.512 kb on - strand at 2502.512 kb on - strand at 2502.512 kb on - strand at 2502.512 kb on - strand at 2502.513 kb on + strand at 2502.513 kb on + strand at 2502.513 kb on + strand at 2502.514 kb on - strand at 2502.514 kb on - strand at 2502.516 kb on + strand at 2502.545 kb on + strand at 2502.560 kb on + strand at 2502.560 kb on + strand at 2502.560 kb on + strand at 2502.560 kb on + strand at 2502.560 kb on + strand at 2502.561 kb on - strand at 2502.561 kb on - strand at 2502.562 kb on + strand at 2502.562 kb on + strand at 2502.562 kb on + strand at 2502.562 kb on + strand at 2502.562 kb on + strand at 2502.562 kb on + strand at 2502.562 kb on + strand at 2502.562 kb on + strand at 2502.562 kb on + strand at 2502.562 kb on + strand at 2502.562 kb on + strand at 2502.562 kb on + strand at 2502.562 kb on + strand at 2502.562 kb on + strand at 2502.562 kb on + strand at 2502.562 kb on + strand at 2502.562 kb on + strand at 2502.562 kb on + strand at 2502.562 kb on + strand at 2502.562 kb on + strand at 2502.562 kb on + strand at 2502.562 kb on + strand at 2502.563 kb on - strand at 2502.563 kb on - strand at 2502.563 kb on - strand at 2502.563 kb on - strand at 2502.563 kb on - strand at 2502.563 kb on - strand at 2502.563 kb on - strand at 2502.563 kb on - strand at 2502.564 kb on + strand at 2502.564 kb on + strand at 2502.565 kb on - strand at 2502.565 kb on - strand at 2502.565 kb on - strand at 2502.565 kb on - strand at 2502.565 kb on - strand at 2502.565 kb on - strand at 2502.565 kb on - strand at 2502.565 kb on - strand at 2502.579 kb on - strand at 2502.624 kb on - strand at 2502.624 kb on - strand at 2502.705 kb on - strand, within rluD at 2502.724 kb on - strand, within rluD at 2502.840 kb on + strand, within rluD at 2502.876 kb on - strand, within rluD at 2502.876 kb on - strand, within rluD at 2502.929 kb on - strand, within rluD at 2502.929 kb on - strand, within rluD at 2502.929 kb on - strand, within rluD at 2502.950 kb on + strand, within rluD at 2502.950 kb on + strand, within rluD at 2502.950 kb on + strand, within rluD at 2502.950 kb on + strand, within rluD at 2502.951 kb on - strand, within rluD at 2502.951 kb on - strand, within rluD at 2503.038 kb on - strand, within rluD at 2503.098 kb on + strand, within rluD at 2503.113 kb on + strand, within rluD at 2503.118 kb on + strand, within rluD at 2503.118 kb on + strand, within rluD at 2503.119 kb on - strand, within rluD at 2503.119 kb on - strand, within rluD at 2503.152 kb on + strand, within rluD at 2503.152 kb on + strand, within rluD at 2503.152 kb on + strand, within rluD at 2503.152 kb on + strand, within rluD at 2503.152 kb on + strand, within rluD at 2503.153 kb on - strand, within rluD at 2503.260 kb on + strand, within rluD at 2503.260 kb on + strand, within rluD at 2503.260 kb on + strand, within rluD at 2503.261 kb on - strand, within rluD at 2503.261 kb on - strand, within rluD at 2503.261 kb on - strand, within rluD at 2503.261 kb on - strand, within rluD at 2503.291 kb on - strand, within rluD at 2503.322 kb on - strand, within rluD at 2503.365 kb on + strand, within rluD at 2503.365 kb on + strand, within rluD at 2503.365 kb on + strand, within rluD at 2503.365 kb on + strand, within rluD at 2503.365 kb on + strand, within rluD at 2503.365 kb on + strand, within rluD at 2503.366 kb on - strand, within rluD at 2503.366 kb on - strand, within rluD at 2503.423 kb on + strand, within rluD at 2503.424 kb on - strand, within rluD at 2503.476 kb on + strand at 2503.476 kb on + strand at 2503.476 kb on + strand at 2503.476 kb on + strand at 2503.477 kb on - strand at 2503.477 kb on - strand at 2503.477 kb on - strand at 2503.477 kb on - strand at 2503.521 kb on + strand at 2503.521 kb on + strand at 2503.521 kb on + strand at 2503.521 kb on + strand at 2503.521 kb on + strand at 2503.521 kb on + strand at 2503.522 kb on - strand at 2503.522 kb on - strand at 2503.522 kb on - strand at 2503.595 kb on + strand at 2503.595 kb on + strand at 2503.596 kb on - strand at 2503.596 kb on - strand at 2503.596 kb on - strand at 2503.727 kb on + strand, within yfiH at 2503.728 kb on - strand, within yfiH at 2503.750 kb on + strand, within yfiH at 2503.750 kb on + strand, within yfiH at 2503.750 kb on + strand, within yfiH at 2503.751 kb on - strand, within yfiH at 2503.769 kb on + strand, within yfiH at 2503.769 kb on + strand, within yfiH at 2503.769 kb on + strand, within yfiH at 2503.770 kb on - strand, within yfiH at 2503.776 kb on - strand, within yfiH at 2503.788 kb on + strand, within yfiH at 2503.788 kb on + strand, within yfiH at 2503.788 kb on + strand, within yfiH at 2503.815 kb on + strand, within yfiH at 2503.816 kb on - strand, within yfiH at 2503.817 kb on + strand, within yfiH at 2503.817 kb on + strand, within yfiH at 2503.818 kb on - strand, within yfiH at 2503.818 kb on - strand, within yfiH at 2503.818 kb on - strand, within yfiH at 2503.818 kb on - strand, within yfiH at 2503.818 kb on - strand, within yfiH at 2503.823 kb on + strand, within yfiH at 2504.073 kb on - strand, within yfiH at 2504.105 kb on + strand, within yfiH at 2504.105 kb on + strand, within yfiH at 2504.105 kb on + strand, within yfiH at 2504.105 kb on + strand, within yfiH at 2504.105 kb on + strand, within yfiH at 2504.106 kb on - strand, within yfiH at 2504.106 kb on - strand, within yfiH at 2504.109 kb on + strand, within yfiH at 2504.109 kb on + strand, within yfiH at 2504.124 kb on + strand, within yfiH at 2504.189 kb on + strand, within yfiH at 2504.189 kb on + strand, within yfiH at 2504.189 kb on + strand, within yfiH at 2504.189 kb on + strand, within yfiH at 2504.189 kb on + strand, within yfiH at 2504.189 kb on + strand, within yfiH at 2504.189 kb on + strand, within yfiH at 2504.189 kb on + strand, within yfiH at 2504.190 kb on - strand, within yfiH at 2504.190 kb on - strand, within yfiH at 2504.190 kb on - strand, within yfiH at 2504.190 kb on - strand, within yfiH at 2504.193 kb on + strand, within yfiH at 2504.193 kb on + strand, within yfiH at 2504.193 kb on + strand, within yfiH at 2504.194 kb on - strand, within yfiH at 2504.194 kb on - strand, within yfiH at 2504.194 kb on - strand, within yfiH at 2504.195 kb on + strand, within yfiH at 2504.246 kb on + strand at 2504.269 kb on + strand at 2504.363 kb on + strand at 2504.364 kb on - strand at 2504.364 kb on - strand at 2504.402 kb on + strand at 2504.403 kb on - strand at 2504.421 kb on - strand at 2504.424 kb on - strand at 2504.503 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECOR27 remove 2,501,679 - +0.9 2,501,695 - +0.1 2,501,695 - +2.2 2,501,698 + -0.8 2,501,698 + -2.0 2,501,699 - -2.9 2,501,699 - -0.4 2,501,699 - -1.9 2,501,699 - -0.4 2,502,456 - +0.6 2,502,456 - -0.3 2,502,456 - -0.2 2,502,499 - -2.8 2,502,499 - -0.1 2,502,499 - -1.4 2,502,504 - -1.3 2,502,511 + +2.2 2,502,511 + -1.4 2,502,511 + +0.6 2,502,511 + +0.4 2,502,511 + -1.4 2,502,511 + -0.7 2,502,511 + +1.2 2,502,512 - -0.3 2,502,512 - -1.2 2,502,512 - -2.0 2,502,512 - -1.4 2,502,512 - -0.6 2,502,512 - +0.4 2,502,512 - -1.1 2,502,513 + -1.0 2,502,513 + -0.1 2,502,513 + -0.9 2,502,514 - -1.4 2,502,514 - +1.6 2,502,516 + -2.9 2,502,545 + -0.1 2,502,560 + -0.2 2,502,560 + -0.9 2,502,560 + -0.4 2,502,560 + -1.2 2,502,560 + -0.2 2,502,561 - -2.2 2,502,561 - -2.6 2,502,562 + -0.4 2,502,562 + -0.4 2,502,562 + +1.0 2,502,562 + -0.0 2,502,562 + -1.2 2,502,562 + +1.6 2,502,562 + +0.8 2,502,562 + -1.0 2,502,562 + -2.4 2,502,562 + -0.5 2,502,562 + -1.4 2,502,562 + -2.0 2,502,562 + -0.8 2,502,562 + -0.1 2,502,562 + -0.0 2,502,562 + -1.0 2,502,562 + +0.6 2,502,562 + -0.4 2,502,562 + -0.8 2,502,562 + -0.2 2,502,562 + -0.0 2,502,562 + -0.2 2,502,563 - +1.6 2,502,563 - +0.1 2,502,563 - +0.8 2,502,563 - -0.2 2,502,563 - -0.8 2,502,563 - -0.4 2,502,563 - +0.6 2,502,563 - +0.1 2,502,564 + -0.8 2,502,564 + +2.4 2,502,565 - -1.1 2,502,565 - -1.4 2,502,565 - -0.3 2,502,565 - -2.4 2,502,565 - +2.2 2,502,565 - -1.0 2,502,565 - -0.2 2,502,565 - -1.6 2,502,579 - -0.4 2,502,624 - -1.8 2,502,624 - +0.6 2,502,705 - rluD NOLOHH_12925 0.14 +2.5 2,502,724 - rluD NOLOHH_12925 0.16 -2.8 2,502,840 + rluD NOLOHH_12925 0.28 +0.4 2,502,876 - rluD NOLOHH_12925 0.32 +0.3 2,502,876 - rluD NOLOHH_12925 0.32 -2.2 2,502,929 - rluD NOLOHH_12925 0.37 -0.4 2,502,929 - rluD NOLOHH_12925 0.37 -0.4 2,502,929 - rluD NOLOHH_12925 0.37 +0.6 2,502,950 + rluD NOLOHH_12925 0.39 +0.6 2,502,950 + rluD NOLOHH_12925 0.39 -1.8 2,502,950 + rluD NOLOHH_12925 0.39 -0.4 2,502,950 + rluD NOLOHH_12925 0.39 +0.6 2,502,951 - rluD NOLOHH_12925 0.39 +0.9 2,502,951 - rluD NOLOHH_12925 0.39 +2.2 2,503,038 - rluD NOLOHH_12925 0.48 +1.6 2,503,098 + rluD NOLOHH_12925 0.54 -1.8 2,503,113 + rluD NOLOHH_12925 0.56 -1.4 2,503,118 + rluD NOLOHH_12925 0.56 -1.0 2,503,118 + rluD NOLOHH_12925 0.56 +0.3 2,503,119 - rluD NOLOHH_12925 0.56 +0.6 2,503,119 - rluD NOLOHH_12925 0.56 +1.3 2,503,152 + rluD NOLOHH_12925 0.60 +0.6 2,503,152 + rluD NOLOHH_12925 0.60 -1.4 2,503,152 + rluD NOLOHH_12925 0.60 -0.6 2,503,152 + rluD NOLOHH_12925 0.60 +0.6 2,503,152 + rluD NOLOHH_12925 0.60 -0.4 2,503,153 - rluD NOLOHH_12925 0.60 -0.0 2,503,260 + rluD NOLOHH_12925 0.71 -0.8 2,503,260 + rluD NOLOHH_12925 0.71 -0.4 2,503,260 + rluD NOLOHH_12925 0.71 -0.4 2,503,261 - rluD NOLOHH_12925 0.71 -1.1 2,503,261 - rluD NOLOHH_12925 0.71 -2.0 2,503,261 - rluD NOLOHH_12925 0.71 +1.2 2,503,261 - rluD NOLOHH_12925 0.71 -1.0 2,503,291 - rluD NOLOHH_12925 0.74 -0.0 2,503,322 - rluD NOLOHH_12925 0.77 -1.6 2,503,365 + rluD NOLOHH_12925 0.82 -2.2 2,503,365 + rluD NOLOHH_12925 0.82 -0.4 2,503,365 + rluD NOLOHH_12925 0.82 -1.0 2,503,365 + rluD NOLOHH_12925 0.82 +0.6 2,503,365 + rluD NOLOHH_12925 0.82 -1.0 2,503,365 + rluD NOLOHH_12925 0.82 +0.6 2,503,366 - rluD NOLOHH_12925 0.82 -2.0 2,503,366 - rluD NOLOHH_12925 0.82 -1.2 2,503,423 + rluD NOLOHH_12925 0.87 -1.0 2,503,424 - rluD NOLOHH_12925 0.88 +2.9 2,503,476 + -2.0 2,503,476 + -1.0 2,503,476 + -0.0 2,503,476 + +0.6 2,503,477 - -0.0 2,503,477 - -0.4 2,503,477 - +1.6 2,503,477 - +0.6 2,503,521 + -0.6 2,503,521 + -0.3 2,503,521 + +0.1 2,503,521 + +1.4 2,503,521 + +0.9 2,503,521 + -0.0 2,503,522 - -1.2 2,503,522 - +0.3 2,503,522 - -1.4 2,503,595 + -0.5 2,503,595 + -0.0 2,503,596 - +0.1 2,503,596 - -0.0 2,503,596 - +2.2 2,503,727 + yfiH NOLOHH_12930 0.25 -0.3 2,503,728 - yfiH NOLOHH_12930 0.25 -0.0 2,503,750 + yfiH NOLOHH_12930 0.28 -0.2 2,503,750 + yfiH NOLOHH_12930 0.28 +0.2 2,503,750 + yfiH NOLOHH_12930 0.28 +1.6 2,503,751 - yfiH NOLOHH_12930 0.29 +0.6 2,503,769 + yfiH NOLOHH_12930 0.31 -0.2 2,503,769 + yfiH NOLOHH_12930 0.31 -0.4 2,503,769 + yfiH NOLOHH_12930 0.31 +0.6 2,503,770 - yfiH NOLOHH_12930 0.31 -0.4 2,503,776 - yfiH NOLOHH_12930 0.32 -0.3 2,503,788 + yfiH NOLOHH_12930 0.34 +0.2 2,503,788 + yfiH NOLOHH_12930 0.34 +1.2 2,503,788 + yfiH NOLOHH_12930 0.34 -0.0 2,503,815 + yfiH NOLOHH_12930 0.37 -0.4 2,503,816 - yfiH NOLOHH_12930 0.37 +1.7 2,503,817 + yfiH NOLOHH_12930 0.38 -0.5 2,503,817 + yfiH NOLOHH_12930 0.38 +0.1 2,503,818 - yfiH NOLOHH_12930 0.38 +0.2 2,503,818 - yfiH NOLOHH_12930 0.38 +1.6 2,503,818 - yfiH NOLOHH_12930 0.38 +0.6 2,503,818 - yfiH NOLOHH_12930 0.38 -0.8 2,503,818 - yfiH NOLOHH_12930 0.38 +0.5 2,503,823 + yfiH NOLOHH_12930 0.38 -0.0 2,504,073 - yfiH NOLOHH_12930 0.73 +1.2 2,504,105 + yfiH NOLOHH_12930 0.77 +0.6 2,504,105 + yfiH NOLOHH_12930 0.77 -0.6 2,504,105 + yfiH NOLOHH_12930 0.77 +0.1 2,504,105 + yfiH NOLOHH_12930 0.77 +0.8 2,504,105 + yfiH NOLOHH_12930 0.77 +0.0 2,504,106 - yfiH NOLOHH_12930 0.77 -1.4 2,504,106 - yfiH NOLOHH_12930 0.77 +0.8 2,504,109 + yfiH NOLOHH_12930 0.77 +0.5 2,504,109 + yfiH NOLOHH_12930 0.77 -0.8 2,504,124 + yfiH NOLOHH_12930 0.80 +0.7 2,504,189 + yfiH NOLOHH_12930 0.88 +0.2 2,504,189 + yfiH NOLOHH_12930 0.88 -0.8 2,504,189 + yfiH NOLOHH_12930 0.88 +0.6 2,504,189 + yfiH NOLOHH_12930 0.88 +2.4 2,504,189 + yfiH NOLOHH_12930 0.88 -0.4 2,504,189 + yfiH NOLOHH_12930 0.88 -0.4 2,504,189 + yfiH NOLOHH_12930 0.88 +0.6 2,504,189 + yfiH NOLOHH_12930 0.88 +0.6 2,504,190 - yfiH NOLOHH_12930 0.89 -0.7 2,504,190 - yfiH NOLOHH_12930 0.89 +0.2 2,504,190 - yfiH NOLOHH_12930 0.89 +0.4 2,504,190 - yfiH NOLOHH_12930 0.89 +0.6 2,504,193 + yfiH NOLOHH_12930 0.89 +1.6 2,504,193 + yfiH NOLOHH_12930 0.89 +0.2 2,504,193 + yfiH NOLOHH_12930 0.89 -0.4 2,504,194 - yfiH NOLOHH_12930 0.89 -0.2 2,504,194 - yfiH NOLOHH_12930 0.89 +0.3 2,504,194 - yfiH NOLOHH_12930 0.89 +0.3 2,504,195 + yfiH NOLOHH_12930 0.89 -0.0 2,504,246 + +0.3 2,504,269 + +0.1 2,504,363 + -1.0 2,504,364 - -2.0 2,504,364 - -0.5 2,504,402 + -0.4 2,504,403 - -0.4 2,504,421 - +0.8 2,504,424 - -0.1 2,504,503 + -0.7
Or see this region's nucleotide sequence