Strain Fitness in Escherichia coli ECOR27 around NOLOHH_12925

Experiment: Control_ECOR27

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntbamD and rluD are separated by 134 nucleotidesrluD and yfiH overlap by 4 nucleotidesyfiH and clpB are separated by 129 nucleotides NOLOHH_12920: bamD - outer membrane protein assembly factor BamD, at 2,501,693 to 2,502,430 bamD NOLOHH_12925: rluD - 23S rRNA pseudouridine(1911/1915/1917) synthase RluD, at 2,502,565 to 2,503,545 rluD NOLOHH_12930: yfiH - purine nucleoside phosphorylase YfiH, at 2,503,542 to 2,504,273 yfiH NOLOHH_12940: clpB - ATP-dependent chaperone ClpB, at 2,504,403 to 2,506,976 clpB Position (kb) 2502 2503 2504Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2501.679 kb on - strandat 2501.695 kb on - strandat 2501.695 kb on - strandat 2501.698 kb on + strandat 2501.698 kb on + strandat 2501.699 kb on - strandat 2501.699 kb on - strandat 2501.699 kb on - strandat 2501.699 kb on - strandat 2502.456 kb on - strandat 2502.456 kb on - strandat 2502.456 kb on - strandat 2502.499 kb on - strandat 2502.499 kb on - strandat 2502.499 kb on - strandat 2502.504 kb on - strandat 2502.511 kb on + strandat 2502.511 kb on + strandat 2502.511 kb on + strandat 2502.511 kb on + strandat 2502.511 kb on + strandat 2502.511 kb on + strandat 2502.511 kb on + strandat 2502.512 kb on - strandat 2502.512 kb on - strandat 2502.512 kb on - strandat 2502.512 kb on - strandat 2502.512 kb on - strandat 2502.512 kb on - strandat 2502.512 kb on - strandat 2502.513 kb on + strandat 2502.513 kb on + strandat 2502.513 kb on + strandat 2502.514 kb on - strandat 2502.514 kb on - strandat 2502.516 kb on + strandat 2502.545 kb on + strandat 2502.560 kb on + strandat 2502.560 kb on + strandat 2502.560 kb on + strandat 2502.560 kb on + strandat 2502.560 kb on + strandat 2502.561 kb on - strandat 2502.561 kb on - strandat 2502.562 kb on + strandat 2502.562 kb on + strandat 2502.562 kb on + strandat 2502.562 kb on + strandat 2502.562 kb on + strandat 2502.562 kb on + strandat 2502.562 kb on + strandat 2502.562 kb on + strandat 2502.562 kb on + strandat 2502.562 kb on + strandat 2502.562 kb on + strandat 2502.562 kb on + strandat 2502.562 kb on + strandat 2502.562 kb on + strandat 2502.562 kb on + strandat 2502.562 kb on + strandat 2502.562 kb on + strandat 2502.562 kb on + strandat 2502.562 kb on + strandat 2502.562 kb on + strandat 2502.562 kb on + strandat 2502.562 kb on + strandat 2502.563 kb on - strandat 2502.563 kb on - strandat 2502.563 kb on - strandat 2502.563 kb on - strandat 2502.563 kb on - strandat 2502.563 kb on - strandat 2502.563 kb on - strandat 2502.563 kb on - strandat 2502.564 kb on + strandat 2502.564 kb on + strandat 2502.565 kb on - strandat 2502.565 kb on - strandat 2502.565 kb on - strandat 2502.565 kb on - strandat 2502.565 kb on - strandat 2502.565 kb on - strandat 2502.565 kb on - strandat 2502.565 kb on - strandat 2502.579 kb on - strandat 2502.624 kb on - strandat 2502.624 kb on - strandat 2502.705 kb on - strand, within rluDat 2502.724 kb on - strand, within rluDat 2502.840 kb on + strand, within rluDat 2502.876 kb on - strand, within rluDat 2502.876 kb on - strand, within rluDat 2502.929 kb on - strand, within rluDat 2502.929 kb on - strand, within rluDat 2502.929 kb on - strand, within rluDat 2502.950 kb on + strand, within rluDat 2502.950 kb on + strand, within rluDat 2502.950 kb on + strand, within rluDat 2502.950 kb on + strand, within rluDat 2502.951 kb on - strand, within rluDat 2502.951 kb on - strand, within rluDat 2503.038 kb on - strand, within rluDat 2503.098 kb on + strand, within rluDat 2503.113 kb on + strand, within rluDat 2503.118 kb on + strand, within rluDat 2503.118 kb on + strand, within rluDat 2503.119 kb on - strand, within rluDat 2503.119 kb on - strand, within rluDat 2503.152 kb on + strand, within rluDat 2503.152 kb on + strand, within rluDat 2503.152 kb on + strand, within rluDat 2503.152 kb on + strand, within rluDat 2503.152 kb on + strand, within rluDat 2503.153 kb on - strand, within rluDat 2503.260 kb on + strand, within rluDat 2503.260 kb on + strand, within rluDat 2503.260 kb on + strand, within rluDat 2503.261 kb on - strand, within rluDat 2503.261 kb on - strand, within rluDat 2503.261 kb on - strand, within rluDat 2503.261 kb on - strand, within rluDat 2503.291 kb on - strand, within rluDat 2503.322 kb on - strand, within rluDat 2503.365 kb on + strand, within rluDat 2503.365 kb on + strand, within rluDat 2503.365 kb on + strand, within rluDat 2503.365 kb on + strand, within rluDat 2503.365 kb on + strand, within rluDat 2503.365 kb on + strand, within rluDat 2503.366 kb on - strand, within rluDat 2503.366 kb on - strand, within rluDat 2503.423 kb on + strand, within rluDat 2503.424 kb on - strand, within rluDat 2503.476 kb on + strandat 2503.476 kb on + strandat 2503.476 kb on + strandat 2503.476 kb on + strandat 2503.477 kb on - strandat 2503.477 kb on - strandat 2503.477 kb on - strandat 2503.477 kb on - strandat 2503.521 kb on + strandat 2503.521 kb on + strandat 2503.521 kb on + strandat 2503.521 kb on + strandat 2503.521 kb on + strandat 2503.521 kb on + strandat 2503.522 kb on - strandat 2503.522 kb on - strandat 2503.522 kb on - strandat 2503.595 kb on + strandat 2503.595 kb on + strandat 2503.596 kb on - strandat 2503.596 kb on - strandat 2503.596 kb on - strandat 2503.727 kb on + strand, within yfiHat 2503.728 kb on - strand, within yfiHat 2503.750 kb on + strand, within yfiHat 2503.750 kb on + strand, within yfiHat 2503.750 kb on + strand, within yfiHat 2503.751 kb on - strand, within yfiHat 2503.769 kb on + strand, within yfiHat 2503.769 kb on + strand, within yfiHat 2503.769 kb on + strand, within yfiHat 2503.770 kb on - strand, within yfiHat 2503.776 kb on - strand, within yfiHat 2503.788 kb on + strand, within yfiHat 2503.788 kb on + strand, within yfiHat 2503.788 kb on + strand, within yfiHat 2503.815 kb on + strand, within yfiHat 2503.816 kb on - strand, within yfiHat 2503.817 kb on + strand, within yfiHat 2503.817 kb on + strand, within yfiHat 2503.818 kb on - strand, within yfiHat 2503.818 kb on - strand, within yfiHat 2503.818 kb on - strand, within yfiHat 2503.818 kb on - strand, within yfiHat 2503.818 kb on - strand, within yfiHat 2503.823 kb on + strand, within yfiHat 2504.073 kb on - strand, within yfiHat 2504.105 kb on + strand, within yfiHat 2504.105 kb on + strand, within yfiHat 2504.105 kb on + strand, within yfiHat 2504.105 kb on + strand, within yfiHat 2504.105 kb on + strand, within yfiHat 2504.106 kb on - strand, within yfiHat 2504.106 kb on - strand, within yfiHat 2504.109 kb on + strand, within yfiHat 2504.109 kb on + strand, within yfiHat 2504.124 kb on + strand, within yfiHat 2504.189 kb on + strand, within yfiHat 2504.189 kb on + strand, within yfiHat 2504.189 kb on + strand, within yfiHat 2504.189 kb on + strand, within yfiHat 2504.189 kb on + strand, within yfiHat 2504.189 kb on + strand, within yfiHat 2504.189 kb on + strand, within yfiHat 2504.189 kb on + strand, within yfiHat 2504.190 kb on - strand, within yfiHat 2504.190 kb on - strand, within yfiHat 2504.190 kb on - strand, within yfiHat 2504.190 kb on - strand, within yfiHat 2504.193 kb on + strand, within yfiHat 2504.193 kb on + strand, within yfiHat 2504.193 kb on + strand, within yfiHat 2504.194 kb on - strand, within yfiHat 2504.194 kb on - strand, within yfiHat 2504.194 kb on - strand, within yfiHat 2504.195 kb on + strand, within yfiHat 2504.246 kb on + strandat 2504.269 kb on + strandat 2504.363 kb on + strandat 2504.364 kb on - strandat 2504.364 kb on - strandat 2504.402 kb on + strandat 2504.403 kb on - strandat 2504.421 kb on - strandat 2504.424 kb on - strandat 2504.503 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECOR27
remove
2,501,679 - +0.9
2,501,695 - +0.1
2,501,695 - +2.2
2,501,698 + -0.8
2,501,698 + -2.0
2,501,699 - -2.9
2,501,699 - -0.4
2,501,699 - -1.9
2,501,699 - -0.4
2,502,456 - +0.6
2,502,456 - -0.3
2,502,456 - -0.2
2,502,499 - -2.8
2,502,499 - -0.1
2,502,499 - -1.4
2,502,504 - -1.3
2,502,511 + +2.2
2,502,511 + -1.4
2,502,511 + +0.6
2,502,511 + +0.4
2,502,511 + -1.4
2,502,511 + -0.7
2,502,511 + +1.2
2,502,512 - -0.3
2,502,512 - -1.2
2,502,512 - -2.0
2,502,512 - -1.4
2,502,512 - -0.6
2,502,512 - +0.4
2,502,512 - -1.1
2,502,513 + -1.0
2,502,513 + -0.1
2,502,513 + -0.9
2,502,514 - -1.4
2,502,514 - +1.6
2,502,516 + -2.9
2,502,545 + -0.1
2,502,560 + -0.2
2,502,560 + -0.9
2,502,560 + -0.4
2,502,560 + -1.2
2,502,560 + -0.2
2,502,561 - -2.2
2,502,561 - -2.6
2,502,562 + -0.4
2,502,562 + -0.4
2,502,562 + +1.0
2,502,562 + -0.0
2,502,562 + -1.2
2,502,562 + +1.6
2,502,562 + +0.8
2,502,562 + -1.0
2,502,562 + -2.4
2,502,562 + -0.5
2,502,562 + -1.4
2,502,562 + -2.0
2,502,562 + -0.8
2,502,562 + -0.1
2,502,562 + -0.0
2,502,562 + -1.0
2,502,562 + +0.6
2,502,562 + -0.4
2,502,562 + -0.8
2,502,562 + -0.2
2,502,562 + -0.0
2,502,562 + -0.2
2,502,563 - +1.6
2,502,563 - +0.1
2,502,563 - +0.8
2,502,563 - -0.2
2,502,563 - -0.8
2,502,563 - -0.4
2,502,563 - +0.6
2,502,563 - +0.1
2,502,564 + -0.8
2,502,564 + +2.4
2,502,565 - -1.1
2,502,565 - -1.4
2,502,565 - -0.3
2,502,565 - -2.4
2,502,565 - +2.2
2,502,565 - -1.0
2,502,565 - -0.2
2,502,565 - -1.6
2,502,579 - -0.4
2,502,624 - -1.8
2,502,624 - +0.6
2,502,705 - rluD NOLOHH_12925 0.14 +2.5
2,502,724 - rluD NOLOHH_12925 0.16 -2.8
2,502,840 + rluD NOLOHH_12925 0.28 +0.4
2,502,876 - rluD NOLOHH_12925 0.32 +0.3
2,502,876 - rluD NOLOHH_12925 0.32 -2.2
2,502,929 - rluD NOLOHH_12925 0.37 -0.4
2,502,929 - rluD NOLOHH_12925 0.37 -0.4
2,502,929 - rluD NOLOHH_12925 0.37 +0.6
2,502,950 + rluD NOLOHH_12925 0.39 +0.6
2,502,950 + rluD NOLOHH_12925 0.39 -1.8
2,502,950 + rluD NOLOHH_12925 0.39 -0.4
2,502,950 + rluD NOLOHH_12925 0.39 +0.6
2,502,951 - rluD NOLOHH_12925 0.39 +0.9
2,502,951 - rluD NOLOHH_12925 0.39 +2.2
2,503,038 - rluD NOLOHH_12925 0.48 +1.6
2,503,098 + rluD NOLOHH_12925 0.54 -1.8
2,503,113 + rluD NOLOHH_12925 0.56 -1.4
2,503,118 + rluD NOLOHH_12925 0.56 -1.0
2,503,118 + rluD NOLOHH_12925 0.56 +0.3
2,503,119 - rluD NOLOHH_12925 0.56 +0.6
2,503,119 - rluD NOLOHH_12925 0.56 +1.3
2,503,152 + rluD NOLOHH_12925 0.60 +0.6
2,503,152 + rluD NOLOHH_12925 0.60 -1.4
2,503,152 + rluD NOLOHH_12925 0.60 -0.6
2,503,152 + rluD NOLOHH_12925 0.60 +0.6
2,503,152 + rluD NOLOHH_12925 0.60 -0.4
2,503,153 - rluD NOLOHH_12925 0.60 -0.0
2,503,260 + rluD NOLOHH_12925 0.71 -0.8
2,503,260 + rluD NOLOHH_12925 0.71 -0.4
2,503,260 + rluD NOLOHH_12925 0.71 -0.4
2,503,261 - rluD NOLOHH_12925 0.71 -1.1
2,503,261 - rluD NOLOHH_12925 0.71 -2.0
2,503,261 - rluD NOLOHH_12925 0.71 +1.2
2,503,261 - rluD NOLOHH_12925 0.71 -1.0
2,503,291 - rluD NOLOHH_12925 0.74 -0.0
2,503,322 - rluD NOLOHH_12925 0.77 -1.6
2,503,365 + rluD NOLOHH_12925 0.82 -2.2
2,503,365 + rluD NOLOHH_12925 0.82 -0.4
2,503,365 + rluD NOLOHH_12925 0.82 -1.0
2,503,365 + rluD NOLOHH_12925 0.82 +0.6
2,503,365 + rluD NOLOHH_12925 0.82 -1.0
2,503,365 + rluD NOLOHH_12925 0.82 +0.6
2,503,366 - rluD NOLOHH_12925 0.82 -2.0
2,503,366 - rluD NOLOHH_12925 0.82 -1.2
2,503,423 + rluD NOLOHH_12925 0.87 -1.0
2,503,424 - rluD NOLOHH_12925 0.88 +2.9
2,503,476 + -2.0
2,503,476 + -1.0
2,503,476 + -0.0
2,503,476 + +0.6
2,503,477 - -0.0
2,503,477 - -0.4
2,503,477 - +1.6
2,503,477 - +0.6
2,503,521 + -0.6
2,503,521 + -0.3
2,503,521 + +0.1
2,503,521 + +1.4
2,503,521 + +0.9
2,503,521 + -0.0
2,503,522 - -1.2
2,503,522 - +0.3
2,503,522 - -1.4
2,503,595 + -0.5
2,503,595 + -0.0
2,503,596 - +0.1
2,503,596 - -0.0
2,503,596 - +2.2
2,503,727 + yfiH NOLOHH_12930 0.25 -0.3
2,503,728 - yfiH NOLOHH_12930 0.25 -0.0
2,503,750 + yfiH NOLOHH_12930 0.28 -0.2
2,503,750 + yfiH NOLOHH_12930 0.28 +0.2
2,503,750 + yfiH NOLOHH_12930 0.28 +1.6
2,503,751 - yfiH NOLOHH_12930 0.29 +0.6
2,503,769 + yfiH NOLOHH_12930 0.31 -0.2
2,503,769 + yfiH NOLOHH_12930 0.31 -0.4
2,503,769 + yfiH NOLOHH_12930 0.31 +0.6
2,503,770 - yfiH NOLOHH_12930 0.31 -0.4
2,503,776 - yfiH NOLOHH_12930 0.32 -0.3
2,503,788 + yfiH NOLOHH_12930 0.34 +0.2
2,503,788 + yfiH NOLOHH_12930 0.34 +1.2
2,503,788 + yfiH NOLOHH_12930 0.34 -0.0
2,503,815 + yfiH NOLOHH_12930 0.37 -0.4
2,503,816 - yfiH NOLOHH_12930 0.37 +1.7
2,503,817 + yfiH NOLOHH_12930 0.38 -0.5
2,503,817 + yfiH NOLOHH_12930 0.38 +0.1
2,503,818 - yfiH NOLOHH_12930 0.38 +0.2
2,503,818 - yfiH NOLOHH_12930 0.38 +1.6
2,503,818 - yfiH NOLOHH_12930 0.38 +0.6
2,503,818 - yfiH NOLOHH_12930 0.38 -0.8
2,503,818 - yfiH NOLOHH_12930 0.38 +0.5
2,503,823 + yfiH NOLOHH_12930 0.38 -0.0
2,504,073 - yfiH NOLOHH_12930 0.73 +1.2
2,504,105 + yfiH NOLOHH_12930 0.77 +0.6
2,504,105 + yfiH NOLOHH_12930 0.77 -0.6
2,504,105 + yfiH NOLOHH_12930 0.77 +0.1
2,504,105 + yfiH NOLOHH_12930 0.77 +0.8
2,504,105 + yfiH NOLOHH_12930 0.77 +0.0
2,504,106 - yfiH NOLOHH_12930 0.77 -1.4
2,504,106 - yfiH NOLOHH_12930 0.77 +0.8
2,504,109 + yfiH NOLOHH_12930 0.77 +0.5
2,504,109 + yfiH NOLOHH_12930 0.77 -0.8
2,504,124 + yfiH NOLOHH_12930 0.80 +0.7
2,504,189 + yfiH NOLOHH_12930 0.88 +0.2
2,504,189 + yfiH NOLOHH_12930 0.88 -0.8
2,504,189 + yfiH NOLOHH_12930 0.88 +0.6
2,504,189 + yfiH NOLOHH_12930 0.88 +2.4
2,504,189 + yfiH NOLOHH_12930 0.88 -0.4
2,504,189 + yfiH NOLOHH_12930 0.88 -0.4
2,504,189 + yfiH NOLOHH_12930 0.88 +0.6
2,504,189 + yfiH NOLOHH_12930 0.88 +0.6
2,504,190 - yfiH NOLOHH_12930 0.89 -0.7
2,504,190 - yfiH NOLOHH_12930 0.89 +0.2
2,504,190 - yfiH NOLOHH_12930 0.89 +0.4
2,504,190 - yfiH NOLOHH_12930 0.89 +0.6
2,504,193 + yfiH NOLOHH_12930 0.89 +1.6
2,504,193 + yfiH NOLOHH_12930 0.89 +0.2
2,504,193 + yfiH NOLOHH_12930 0.89 -0.4
2,504,194 - yfiH NOLOHH_12930 0.89 -0.2
2,504,194 - yfiH NOLOHH_12930 0.89 +0.3
2,504,194 - yfiH NOLOHH_12930 0.89 +0.3
2,504,195 + yfiH NOLOHH_12930 0.89 -0.0
2,504,246 + +0.3
2,504,269 + +0.1
2,504,363 + -1.0
2,504,364 - -2.0
2,504,364 - -0.5
2,504,402 + -0.4
2,504,403 - -0.4
2,504,421 - +0.8
2,504,424 - -0.1
2,504,503 + -0.7

Or see this region's nucleotide sequence