Experiment: Control_ECOR27
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt mutY and trmB are separated by 160 nucleotides trmB and yggL overlap by 1 nucleotides yggL and yggN are separated by 183 nucleotides
NOLOHH_11060: mutY - A/G-specific adenine glycosylase, at 2,141,592 to 2,142,644
mutY
NOLOHH_11065: trmB - tRNA (guanosine(46)-N7)-methyltransferase TrmB, at 2,142,805 to 2,143,524
trmB
NOLOHH_11070: yggL - Uncharacterized protein YggL, at 2,143,524 to 2,143,850
yggL
NOLOHH_11075: yggN - Uncharacterized protein YggN, at 2,144,034 to 2,144,753
yggN
Position (kb)
2143
2144 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2142.546 kb on + strand at 2142.546 kb on + strand at 2142.546 kb on + strand at 2142.546 kb on + strand at 2142.546 kb on + strand at 2142.546 kb on + strand at 2142.546 kb on + strand at 2142.547 kb on - strand at 2142.547 kb on - strand at 2142.547 kb on - strand at 2142.547 kb on - strand at 2142.547 kb on - strand at 2142.553 kb on + strand at 2142.595 kb on + strand at 2142.599 kb on + strand at 2142.605 kb on - strand at 2142.730 kb on + strand at 2142.731 kb on - strand at 2142.752 kb on + strand at 2142.752 kb on + strand at 2142.753 kb on - strand at 2142.753 kb on - strand at 2142.861 kb on + strand at 2142.867 kb on + strand at 2142.925 kb on + strand, within trmB at 2142.926 kb on - strand, within trmB at 2142.960 kb on + strand, within trmB at 2142.960 kb on + strand, within trmB at 2142.961 kb on - strand, within trmB at 2143.051 kb on - strand, within trmB at 2143.139 kb on + strand, within trmB at 2143.185 kb on + strand, within trmB at 2143.186 kb on - strand, within trmB at 2143.186 kb on - strand, within trmB at 2143.186 kb on - strand, within trmB at 2143.260 kb on + strand, within trmB at 2143.261 kb on - strand, within trmB at 2143.261 kb on - strand, within trmB at 2143.270 kb on - strand, within trmB at 2143.355 kb on - strand, within trmB at 2143.365 kb on + strand, within trmB at 2143.365 kb on + strand, within trmB at 2143.365 kb on + strand, within trmB at 2143.365 kb on + strand, within trmB at 2143.365 kb on + strand, within trmB at 2143.365 kb on + strand, within trmB at 2143.365 kb on + strand, within trmB at 2143.365 kb on + strand, within trmB at 2143.365 kb on + strand, within trmB at 2143.366 kb on - strand, within trmB at 2143.366 kb on - strand, within trmB at 2143.366 kb on - strand, within trmB at 2143.366 kb on - strand, within trmB at 2143.366 kb on - strand, within trmB at 2143.386 kb on + strand, within trmB at 2143.398 kb on + strand, within trmB at 2143.398 kb on + strand, within trmB at 2143.398 kb on + strand, within trmB at 2143.423 kb on + strand, within trmB at 2143.424 kb on - strand, within trmB at 2143.424 kb on - strand, within trmB at 2143.424 kb on - strand, within trmB at 2143.493 kb on + strand at 2143.502 kb on + strand at 2143.502 kb on + strand at 2143.503 kb on - strand at 2143.503 kb on - strand at 2143.503 kb on - strand at 2143.503 kb on - strand at 2143.522 kb on + strand at 2143.522 kb on + strand at 2143.522 kb on + strand at 2143.523 kb on - strand at 2143.619 kb on + strand, within yggL at 2143.619 kb on + strand, within yggL at 2143.619 kb on + strand, within yggL at 2143.640 kb on + strand, within yggL at 2143.640 kb on + strand, within yggL at 2143.641 kb on - strand, within yggL at 2143.781 kb on + strand, within yggL at 2143.782 kb on - strand, within yggL at 2143.848 kb on + strand at 2143.901 kb on - strand at 2143.947 kb on + strand at 2144.033 kb on + strand at 2144.033 kb on + strand at 2144.034 kb on - strand at 2144.034 kb on - strand at 2144.034 kb on - strand at 2144.034 kb on - strand at 2144.097 kb on + strand at 2144.205 kb on + strand, within yggN at 2144.205 kb on + strand, within yggN at 2144.205 kb on + strand, within yggN at 2144.205 kb on + strand, within yggN at 2144.206 kb on - strand, within yggN at 2144.206 kb on - strand, within yggN at 2144.221 kb on - strand, within yggN at 2144.272 kb on + strand, within yggN at 2144.272 kb on + strand, within yggN at 2144.273 kb on - strand, within yggN at 2144.469 kb on + strand, within yggN at 2144.471 kb on + strand, within yggN at 2144.471 kb on + strand, within yggN at 2144.471 kb on + strand, within yggN at 2144.471 kb on + strand, within yggN at 2144.472 kb on - strand, within yggN at 2144.720 kb on + strand at 2144.751 kb on + strand at 2144.828 kb on + strand at 2144.844 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECOR27 remove 2,142,546 + -0.3 2,142,546 + +0.5 2,142,546 + -0.1 2,142,546 + +0.0 2,142,546 + +0.1 2,142,546 + +1.0 2,142,546 + +1.1 2,142,547 - -0.3 2,142,547 - +0.3 2,142,547 - -1.1 2,142,547 - +0.0 2,142,547 - +0.1 2,142,553 + +0.2 2,142,595 + -0.9 2,142,599 + -0.3 2,142,605 - +0.7 2,142,730 + +1.2 2,142,731 - +1.1 2,142,752 + +0.3 2,142,752 + +1.1 2,142,753 - +1.1 2,142,753 - +0.2 2,142,861 + +0.7 2,142,867 + +0.3 2,142,925 + trmB NOLOHH_11065 0.17 -0.5 2,142,926 - trmB NOLOHH_11065 0.17 -0.3 2,142,960 + trmB NOLOHH_11065 0.22 -1.1 2,142,960 + trmB NOLOHH_11065 0.22 +0.4 2,142,961 - trmB NOLOHH_11065 0.22 -0.9 2,143,051 - trmB NOLOHH_11065 0.34 +0.5 2,143,139 + trmB NOLOHH_11065 0.46 +0.1 2,143,185 + trmB NOLOHH_11065 0.53 +0.5 2,143,186 - trmB NOLOHH_11065 0.53 -0.3 2,143,186 - trmB NOLOHH_11065 0.53 +0.7 2,143,186 - trmB NOLOHH_11065 0.53 +1.2 2,143,260 + trmB NOLOHH_11065 0.63 +3.1 2,143,261 - trmB NOLOHH_11065 0.63 +0.3 2,143,261 - trmB NOLOHH_11065 0.63 -0.7 2,143,270 - trmB NOLOHH_11065 0.65 +1.8 2,143,355 - trmB NOLOHH_11065 0.76 +0.8 2,143,365 + trmB NOLOHH_11065 0.78 -1.8 2,143,365 + trmB NOLOHH_11065 0.78 +0.6 2,143,365 + trmB NOLOHH_11065 0.78 +0.7 2,143,365 + trmB NOLOHH_11065 0.78 +1.0 2,143,365 + trmB NOLOHH_11065 0.78 +0.8 2,143,365 + trmB NOLOHH_11065 0.78 +0.4 2,143,365 + trmB NOLOHH_11065 0.78 -1.9 2,143,365 + trmB NOLOHH_11065 0.78 +1.9 2,143,365 + trmB NOLOHH_11065 0.78 -0.5 2,143,366 - trmB NOLOHH_11065 0.78 -1.3 2,143,366 - trmB NOLOHH_11065 0.78 +0.5 2,143,366 - trmB NOLOHH_11065 0.78 -0.3 2,143,366 - trmB NOLOHH_11065 0.78 -0.2 2,143,366 - trmB NOLOHH_11065 0.78 -0.3 2,143,386 + trmB NOLOHH_11065 0.81 -0.3 2,143,398 + trmB NOLOHH_11065 0.82 +0.9 2,143,398 + trmB NOLOHH_11065 0.82 +0.9 2,143,398 + trmB NOLOHH_11065 0.82 +0.7 2,143,423 + trmB NOLOHH_11065 0.86 -0.1 2,143,424 - trmB NOLOHH_11065 0.86 -1.3 2,143,424 - trmB NOLOHH_11065 0.86 -0.9 2,143,424 - trmB NOLOHH_11065 0.86 +2.2 2,143,493 + +0.9 2,143,502 + -0.3 2,143,502 + +0.1 2,143,503 - +0.3 2,143,503 - +0.5 2,143,503 - -0.3 2,143,503 - -0.7 2,143,522 + -1.2 2,143,522 + +1.2 2,143,522 + +0.8 2,143,523 - +1.2 2,143,619 + yggL NOLOHH_11070 0.29 +0.7 2,143,619 + yggL NOLOHH_11070 0.29 -1.2 2,143,619 + yggL NOLOHH_11070 0.29 -0.7 2,143,640 + yggL NOLOHH_11070 0.35 -0.4 2,143,640 + yggL NOLOHH_11070 0.35 -0.3 2,143,641 - yggL NOLOHH_11070 0.36 +0.2 2,143,781 + yggL NOLOHH_11070 0.79 -1.1 2,143,782 - yggL NOLOHH_11070 0.79 -0.1 2,143,848 + -0.3 2,143,901 - +0.7 2,143,947 + -0.8 2,144,033 + -0.2 2,144,033 + -1.7 2,144,034 - -0.0 2,144,034 - +0.7 2,144,034 - -0.2 2,144,034 - -0.9 2,144,097 + -0.8 2,144,205 + yggN NOLOHH_11075 0.24 +0.7 2,144,205 + yggN NOLOHH_11075 0.24 -1.7 2,144,205 + yggN NOLOHH_11075 0.24 +1.2 2,144,205 + yggN NOLOHH_11075 0.24 +0.2 2,144,206 - yggN NOLOHH_11075 0.24 -1.3 2,144,206 - yggN NOLOHH_11075 0.24 -0.1 2,144,221 - yggN NOLOHH_11075 0.26 -1.3 2,144,272 + yggN NOLOHH_11075 0.33 +0.7 2,144,272 + yggN NOLOHH_11075 0.33 -0.5 2,144,273 - yggN NOLOHH_11075 0.33 -0.7 2,144,469 + yggN NOLOHH_11075 0.60 +1.9 2,144,471 + yggN NOLOHH_11075 0.61 -0.2 2,144,471 + yggN NOLOHH_11075 0.61 -1.2 2,144,471 + yggN NOLOHH_11075 0.61 -0.4 2,144,471 + yggN NOLOHH_11075 0.61 -1.5 2,144,472 - yggN NOLOHH_11075 0.61 -0.7 2,144,720 + -2.7 2,144,751 + +0.9 2,144,828 + -0.8 2,144,844 - +1.7
Or see this region's nucleotide sequence