Strain Fitness in Escherichia coli ECOR27 around NOLOHH_11070

Experiment: Control_ECOR27

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmutY and trmB are separated by 160 nucleotidestrmB and yggL overlap by 1 nucleotidesyggL and yggN are separated by 183 nucleotides NOLOHH_11060: mutY - A/G-specific adenine glycosylase, at 2,141,592 to 2,142,644 mutY NOLOHH_11065: trmB - tRNA (guanosine(46)-N7)-methyltransferase TrmB, at 2,142,805 to 2,143,524 trmB NOLOHH_11070: yggL - Uncharacterized protein YggL, at 2,143,524 to 2,143,850 yggL NOLOHH_11075: yggN - Uncharacterized protein YggN, at 2,144,034 to 2,144,753 yggN Position (kb) 2143 2144Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2142.546 kb on + strandat 2142.546 kb on + strandat 2142.546 kb on + strandat 2142.546 kb on + strandat 2142.546 kb on + strandat 2142.546 kb on + strandat 2142.546 kb on + strandat 2142.547 kb on - strandat 2142.547 kb on - strandat 2142.547 kb on - strandat 2142.547 kb on - strandat 2142.547 kb on - strandat 2142.553 kb on + strandat 2142.595 kb on + strandat 2142.599 kb on + strandat 2142.605 kb on - strandat 2142.730 kb on + strandat 2142.731 kb on - strandat 2142.752 kb on + strandat 2142.752 kb on + strandat 2142.753 kb on - strandat 2142.753 kb on - strandat 2142.861 kb on + strandat 2142.867 kb on + strandat 2142.925 kb on + strand, within trmBat 2142.926 kb on - strand, within trmBat 2142.960 kb on + strand, within trmBat 2142.960 kb on + strand, within trmBat 2142.961 kb on - strand, within trmBat 2143.051 kb on - strand, within trmBat 2143.139 kb on + strand, within trmBat 2143.185 kb on + strand, within trmBat 2143.186 kb on - strand, within trmBat 2143.186 kb on - strand, within trmBat 2143.186 kb on - strand, within trmBat 2143.260 kb on + strand, within trmBat 2143.261 kb on - strand, within trmBat 2143.261 kb on - strand, within trmBat 2143.270 kb on - strand, within trmBat 2143.355 kb on - strand, within trmBat 2143.365 kb on + strand, within trmBat 2143.365 kb on + strand, within trmBat 2143.365 kb on + strand, within trmBat 2143.365 kb on + strand, within trmBat 2143.365 kb on + strand, within trmBat 2143.365 kb on + strand, within trmBat 2143.365 kb on + strand, within trmBat 2143.365 kb on + strand, within trmBat 2143.365 kb on + strand, within trmBat 2143.366 kb on - strand, within trmBat 2143.366 kb on - strand, within trmBat 2143.366 kb on - strand, within trmBat 2143.366 kb on - strand, within trmBat 2143.366 kb on - strand, within trmBat 2143.386 kb on + strand, within trmBat 2143.398 kb on + strand, within trmBat 2143.398 kb on + strand, within trmBat 2143.398 kb on + strand, within trmBat 2143.423 kb on + strand, within trmBat 2143.424 kb on - strand, within trmBat 2143.424 kb on - strand, within trmBat 2143.424 kb on - strand, within trmBat 2143.493 kb on + strandat 2143.502 kb on + strandat 2143.502 kb on + strandat 2143.503 kb on - strandat 2143.503 kb on - strandat 2143.503 kb on - strandat 2143.503 kb on - strandat 2143.522 kb on + strandat 2143.522 kb on + strandat 2143.522 kb on + strandat 2143.523 kb on - strandat 2143.619 kb on + strand, within yggLat 2143.619 kb on + strand, within yggLat 2143.619 kb on + strand, within yggLat 2143.640 kb on + strand, within yggLat 2143.640 kb on + strand, within yggLat 2143.641 kb on - strand, within yggLat 2143.781 kb on + strand, within yggLat 2143.782 kb on - strand, within yggLat 2143.848 kb on + strandat 2143.901 kb on - strandat 2143.947 kb on + strandat 2144.033 kb on + strandat 2144.033 kb on + strandat 2144.034 kb on - strandat 2144.034 kb on - strandat 2144.034 kb on - strandat 2144.034 kb on - strandat 2144.097 kb on + strandat 2144.205 kb on + strand, within yggNat 2144.205 kb on + strand, within yggNat 2144.205 kb on + strand, within yggNat 2144.205 kb on + strand, within yggNat 2144.206 kb on - strand, within yggNat 2144.206 kb on - strand, within yggNat 2144.221 kb on - strand, within yggNat 2144.272 kb on + strand, within yggNat 2144.272 kb on + strand, within yggNat 2144.273 kb on - strand, within yggNat 2144.469 kb on + strand, within yggNat 2144.471 kb on + strand, within yggNat 2144.471 kb on + strand, within yggNat 2144.471 kb on + strand, within yggNat 2144.471 kb on + strand, within yggNat 2144.472 kb on - strand, within yggNat 2144.720 kb on + strandat 2144.751 kb on + strandat 2144.828 kb on + strandat 2144.844 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECOR27
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2,142,546 + -0.3
2,142,546 + +0.5
2,142,546 + -0.1
2,142,546 + +0.0
2,142,546 + +0.1
2,142,546 + +1.0
2,142,546 + +1.1
2,142,547 - -0.3
2,142,547 - +0.3
2,142,547 - -1.1
2,142,547 - +0.0
2,142,547 - +0.1
2,142,553 + +0.2
2,142,595 + -0.9
2,142,599 + -0.3
2,142,605 - +0.7
2,142,730 + +1.2
2,142,731 - +1.1
2,142,752 + +0.3
2,142,752 + +1.1
2,142,753 - +1.1
2,142,753 - +0.2
2,142,861 + +0.7
2,142,867 + +0.3
2,142,925 + trmB NOLOHH_11065 0.17 -0.5
2,142,926 - trmB NOLOHH_11065 0.17 -0.3
2,142,960 + trmB NOLOHH_11065 0.22 -1.1
2,142,960 + trmB NOLOHH_11065 0.22 +0.4
2,142,961 - trmB NOLOHH_11065 0.22 -0.9
2,143,051 - trmB NOLOHH_11065 0.34 +0.5
2,143,139 + trmB NOLOHH_11065 0.46 +0.1
2,143,185 + trmB NOLOHH_11065 0.53 +0.5
2,143,186 - trmB NOLOHH_11065 0.53 -0.3
2,143,186 - trmB NOLOHH_11065 0.53 +0.7
2,143,186 - trmB NOLOHH_11065 0.53 +1.2
2,143,260 + trmB NOLOHH_11065 0.63 +3.1
2,143,261 - trmB NOLOHH_11065 0.63 +0.3
2,143,261 - trmB NOLOHH_11065 0.63 -0.7
2,143,270 - trmB NOLOHH_11065 0.65 +1.8
2,143,355 - trmB NOLOHH_11065 0.76 +0.8
2,143,365 + trmB NOLOHH_11065 0.78 -1.8
2,143,365 + trmB NOLOHH_11065 0.78 +0.6
2,143,365 + trmB NOLOHH_11065 0.78 +0.7
2,143,365 + trmB NOLOHH_11065 0.78 +1.0
2,143,365 + trmB NOLOHH_11065 0.78 +0.8
2,143,365 + trmB NOLOHH_11065 0.78 +0.4
2,143,365 + trmB NOLOHH_11065 0.78 -1.9
2,143,365 + trmB NOLOHH_11065 0.78 +1.9
2,143,365 + trmB NOLOHH_11065 0.78 -0.5
2,143,366 - trmB NOLOHH_11065 0.78 -1.3
2,143,366 - trmB NOLOHH_11065 0.78 +0.5
2,143,366 - trmB NOLOHH_11065 0.78 -0.3
2,143,366 - trmB NOLOHH_11065 0.78 -0.2
2,143,366 - trmB NOLOHH_11065 0.78 -0.3
2,143,386 + trmB NOLOHH_11065 0.81 -0.3
2,143,398 + trmB NOLOHH_11065 0.82 +0.9
2,143,398 + trmB NOLOHH_11065 0.82 +0.9
2,143,398 + trmB NOLOHH_11065 0.82 +0.7
2,143,423 + trmB NOLOHH_11065 0.86 -0.1
2,143,424 - trmB NOLOHH_11065 0.86 -1.3
2,143,424 - trmB NOLOHH_11065 0.86 -0.9
2,143,424 - trmB NOLOHH_11065 0.86 +2.2
2,143,493 + +0.9
2,143,502 + -0.3
2,143,502 + +0.1
2,143,503 - +0.3
2,143,503 - +0.5
2,143,503 - -0.3
2,143,503 - -0.7
2,143,522 + -1.2
2,143,522 + +1.2
2,143,522 + +0.8
2,143,523 - +1.2
2,143,619 + yggL NOLOHH_11070 0.29 +0.7
2,143,619 + yggL NOLOHH_11070 0.29 -1.2
2,143,619 + yggL NOLOHH_11070 0.29 -0.7
2,143,640 + yggL NOLOHH_11070 0.35 -0.4
2,143,640 + yggL NOLOHH_11070 0.35 -0.3
2,143,641 - yggL NOLOHH_11070 0.36 +0.2
2,143,781 + yggL NOLOHH_11070 0.79 -1.1
2,143,782 - yggL NOLOHH_11070 0.79 -0.1
2,143,848 + -0.3
2,143,901 - +0.7
2,143,947 + -0.8
2,144,033 + -0.2
2,144,033 + -1.7
2,144,034 - -0.0
2,144,034 - +0.7
2,144,034 - -0.2
2,144,034 - -0.9
2,144,097 + -0.8
2,144,205 + yggN NOLOHH_11075 0.24 +0.7
2,144,205 + yggN NOLOHH_11075 0.24 -1.7
2,144,205 + yggN NOLOHH_11075 0.24 +1.2
2,144,205 + yggN NOLOHH_11075 0.24 +0.2
2,144,206 - yggN NOLOHH_11075 0.24 -1.3
2,144,206 - yggN NOLOHH_11075 0.24 -0.1
2,144,221 - yggN NOLOHH_11075 0.26 -1.3
2,144,272 + yggN NOLOHH_11075 0.33 +0.7
2,144,272 + yggN NOLOHH_11075 0.33 -0.5
2,144,273 - yggN NOLOHH_11075 0.33 -0.7
2,144,469 + yggN NOLOHH_11075 0.60 +1.9
2,144,471 + yggN NOLOHH_11075 0.61 -0.2
2,144,471 + yggN NOLOHH_11075 0.61 -1.2
2,144,471 + yggN NOLOHH_11075 0.61 -0.4
2,144,471 + yggN NOLOHH_11075 0.61 -1.5
2,144,472 - yggN NOLOHH_11075 0.61 -0.7
2,144,720 + -2.7
2,144,751 + +0.9
2,144,828 + -0.8
2,144,844 - +1.7

Or see this region's nucleotide sequence