Strain Fitness in Escherichia coli ECOR27 around NOLOHH_10580

Experiment: Control_ECOR27

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyqiG and ygiL are separated by 50 nucleotidesygiL and ubiK are separated by 282 nucleotidesubiK and ribB are separated by 373 nucleotides NOLOHH_10570: yqiG - Putative outer membrane usher protein YqiG, at 2,042,933 to 2,045,446 yqiG NOLOHH_10575: ygiL - fimbrial-like protein, at 2,045,497 to 2,046,048 ygiL NOLOHH_10580: ubiK - ubiquinone biosynthesis accessory factor UbiK, at 2,046,331 to 2,046,621 ubiK NOLOHH_10585: ribB - 3,4-dihydroxy-2-butanone 4-phosphate synthase, at 2,046,995 to 2,047,648 ribB Position (kb) 2046 2047Strain fitness (log2 ratio) -2 -1 0 1 2at 2045.454 kb on + strandat 2045.515 kb on - strandat 2045.531 kb on + strandat 2045.572 kb on - strand, within ygiLat 2045.605 kb on - strand, within ygiLat 2045.608 kb on - strand, within ygiLat 2045.619 kb on + strand, within ygiLat 2045.619 kb on + strand, within ygiLat 2045.639 kb on - strand, within ygiLat 2045.671 kb on - strand, within ygiLat 2045.749 kb on - strand, within ygiLat 2045.749 kb on - strand, within ygiLat 2045.767 kb on - strand, within ygiLat 2045.952 kb on + strand, within ygiLat 2046.242 kb on - strandat 2046.283 kb on + strandat 2046.296 kb on + strandat 2046.372 kb on + strand, within ubiKat 2046.373 kb on - strand, within ubiKat 2046.482 kb on - strand, within ubiKat 2046.511 kb on + strand, within ubiKat 2046.512 kb on - strand, within ubiKat 2046.624 kb on + strandat 2046.625 kb on - strandat 2046.641 kb on + strandat 2046.642 kb on - strandat 2046.642 kb on - strandat 2046.642 kb on - strandat 2046.660 kb on + strandat 2046.660 kb on + strandat 2046.660 kb on + strandat 2046.674 kb on + strandat 2046.674 kb on + strandat 2046.674 kb on + strandat 2046.674 kb on + strandat 2046.675 kb on - strandat 2046.675 kb on - strandat 2046.675 kb on - strandat 2046.675 kb on - strandat 2046.675 kb on - strandat 2046.682 kb on - strandat 2046.692 kb on + strandat 2046.692 kb on + strandat 2046.702 kb on + strandat 2046.702 kb on + strandat 2046.702 kb on + strandat 2046.703 kb on - strandat 2046.703 kb on - strandat 2046.931 kb on + strandat 2046.966 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECOR27
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2,045,454 + +2.0
2,045,515 - +0.2
2,045,531 + -0.2
2,045,572 - ygiL NOLOHH_10575 0.14 -0.1
2,045,605 - ygiL NOLOHH_10575 0.20 -0.7
2,045,608 - ygiL NOLOHH_10575 0.20 +0.5
2,045,619 + ygiL NOLOHH_10575 0.22 +1.5
2,045,619 + ygiL NOLOHH_10575 0.22 +0.9
2,045,639 - ygiL NOLOHH_10575 0.26 +0.1
2,045,671 - ygiL NOLOHH_10575 0.32 +0.5
2,045,749 - ygiL NOLOHH_10575 0.46 -0.5
2,045,749 - ygiL NOLOHH_10575 0.46 +1.1
2,045,767 - ygiL NOLOHH_10575 0.49 +1.3
2,045,952 + ygiL NOLOHH_10575 0.82 +2.7
2,046,242 - -0.3
2,046,283 + -0.1
2,046,296 + +0.9
2,046,372 + ubiK NOLOHH_10580 0.14 -2.1
2,046,373 - ubiK NOLOHH_10580 0.14 -1.1
2,046,482 - ubiK NOLOHH_10580 0.52 -0.3
2,046,511 + ubiK NOLOHH_10580 0.62 -0.3
2,046,512 - ubiK NOLOHH_10580 0.62 -0.3
2,046,624 + -1.3
2,046,625 - -1.0
2,046,641 + -0.5
2,046,642 - -0.3
2,046,642 - -0.3
2,046,642 - +0.2
2,046,660 + -1.6
2,046,660 + +0.8
2,046,660 + -0.4
2,046,674 + -1.1
2,046,674 + +0.4
2,046,674 + -1.6
2,046,674 + -0.5
2,046,675 - -1.0
2,046,675 - +0.3
2,046,675 - -0.2
2,046,675 - +0.7
2,046,675 - -1.3
2,046,682 - +0.7
2,046,692 + -1.7
2,046,692 + +0.1
2,046,702 + -0.9
2,046,702 + +0.7
2,046,702 + -0.9
2,046,703 - -0.6
2,046,703 - -0.3
2,046,931 + -0.9
2,046,966 - +0.7

Or see this region's nucleotide sequence