Strain Fitness in Escherichia coli ECOR27 around NOLOHH_09905

Experiment: Control_ECOR27

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfMet_trna and rimP are separated by 206 nucleotidesrimP and nusA are separated by 27 nucleotidesnusA and infB are separated by 24 nucleotides NOLOHH_09895: fMet_trna - tRNA-fMet(cat), at 1,907,096 to 1,907,172 _trna NOLOHH_09900: rimP - ribosome maturation factor RimP, at 1,907,379 to 1,907,831 rimP NOLOHH_09905: nusA - Transcription termination/antitermination protein NusA, at 1,907,859 to 1,909,346 nusA NOLOHH_09910: infB - Translation initiation factor IF-2, at 1,909,371 to 1,912,043 infB Position (kb) 1907 1908 1909 1910Strain fitness (log2 ratio) -2 -1 0 1 2at 1906.886 kb on - strandat 1906.947 kb on - strandat 1907.000 kb on + strandat 1907.001 kb on - strandat 1907.049 kb on + strandat 1907.200 kb on + strandat 1907.829 kb on + strandat 1908.850 kb on + strand, within nusAat 1908.871 kb on + strand, within nusAat 1908.871 kb on + strand, within nusAat 1908.979 kb on + strand, within nusAat 1909.014 kb on + strand, within nusAat 1909.177 kb on + strand, within nusAat 1909.177 kb on + strand, within nusAat 1909.177 kb on + strand, within nusAat 1909.220 kb on + strandat 1909.347 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECOR27
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1,906,886 - -0.2
1,906,947 - +2.0
1,907,000 + -0.5
1,907,001 - +0.2
1,907,049 + -0.3
1,907,200 + -0.1
1,907,829 + +0.7
1,908,850 + nusA NOLOHH_09905 0.67 -0.3
1,908,871 + nusA NOLOHH_09905 0.68 +0.5
1,908,871 + nusA NOLOHH_09905 0.68 +0.7
1,908,979 + nusA NOLOHH_09905 0.75 -2.1
1,909,014 + nusA NOLOHH_09905 0.78 +0.1
1,909,177 + nusA NOLOHH_09905 0.89 -0.9
1,909,177 + nusA NOLOHH_09905 0.89 -0.3
1,909,177 + nusA NOLOHH_09905 0.89 -1.2
1,909,220 + +1.5
1,909,347 + -1.3

Or see this region's nucleotide sequence