Strain Fitness in Escherichia coli ECOR27 around NOLOHH_09850

Experiment: Control_ECOR27

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntdacB and greA are separated by 247 nucleotidesgreA and yhbY are separated by 155 nucleotidesyhbY and rlmE are separated by 125 nucleotidesrlmE and ftsH are separated by 90 nucleotides NOLOHH_09840: dacB - serine-type D-Ala-D-Ala carboxypeptidase, at 1,894,989 to 1,896,422 dacB NOLOHH_09845: greA - transcription elongation factor GreA, at 1,896,670 to 1,897,146 greA NOLOHH_09850: yhbY - ribosome assembly RNA-binding protein YhbY, at 1,897,302 to 1,897,595 yhbY NOLOHH_09855: rlmE - 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE, at 1,897,721 to 1,898,350 rlmE NOLOHH_09860: ftsH - ATP-dependent zinc metalloprotease FtsH, at 1,898,441 to 1,900,384 ftsH Position (kb) 1897 1898Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1896.346 kb on + strandat 1896.346 kb on + strandat 1896.346 kb on + strandat 1896.347 kb on - strandat 1896.347 kb on - strandat 1896.347 kb on - strandat 1896.347 kb on - strandat 1896.382 kb on - strandat 1896.383 kb on + strandat 1896.383 kb on + strandat 1896.404 kb on + strandat 1896.405 kb on - strandat 1896.457 kb on + strandat 1896.457 kb on + strandat 1896.457 kb on + strandat 1896.457 kb on + strandat 1896.458 kb on - strandat 1896.458 kb on - strandat 1896.458 kb on - strandat 1896.460 kb on + strandat 1896.461 kb on - strandat 1896.475 kb on + strandat 1896.476 kb on - strandat 1896.478 kb on - strandat 1896.483 kb on - strandat 1896.483 kb on - strandat 1896.511 kb on + strandat 1896.521 kb on - strandat 1896.537 kb on + strandat 1896.537 kb on + strandat 1896.556 kb on - strandat 1896.598 kb on + strandat 1896.598 kb on + strandat 1896.598 kb on + strandat 1896.652 kb on - strandat 1896.662 kb on + strandat 1896.662 kb on + strandat 1896.662 kb on + strandat 1896.662 kb on + strandat 1896.662 kb on + strandat 1896.678 kb on + strandat 1897.044 kb on + strand, within greAat 1897.124 kb on + strandat 1897.124 kb on + strandat 1897.124 kb on + strandat 1897.128 kb on + strandat 1897.129 kb on - strandat 1897.138 kb on + strandat 1897.138 kb on + strandat 1897.138 kb on + strandat 1897.176 kb on - strandat 1897.181 kb on - strandat 1897.213 kb on + strandat 1897.213 kb on + strandat 1897.214 kb on - strandat 1897.214 kb on - strandat 1897.269 kb on + strandat 1897.269 kb on + strandat 1897.269 kb on + strandat 1897.269 kb on + strandat 1897.292 kb on + strandat 1897.322 kb on + strandat 1897.322 kb on + strandat 1897.323 kb on - strandat 1897.331 kb on + strandat 1897.359 kb on - strand, within yhbYat 1897.376 kb on + strand, within yhbYat 1897.377 kb on - strand, within yhbYat 1897.377 kb on - strand, within yhbYat 1897.400 kb on + strand, within yhbYat 1897.474 kb on - strand, within yhbYat 1897.580 kb on + strandat 1897.580 kb on + strandat 1897.581 kb on - strandat 1897.609 kb on + strandat 1897.610 kb on - strandat 1897.651 kb on + strandat 1897.651 kb on + strandat 1897.653 kb on + strandat 1897.653 kb on + strandat 1897.653 kb on + strandat 1897.653 kb on + strandat 1897.653 kb on + strandat 1897.654 kb on - strandat 1897.663 kb on + strandat 1897.663 kb on + strandat 1897.701 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECOR27
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1,896,346 + -0.9
1,896,346 + +0.4
1,896,346 + -0.7
1,896,347 - -0.0
1,896,347 - -0.3
1,896,347 - -0.4
1,896,347 - -0.0
1,896,382 - +0.0
1,896,383 + +0.7
1,896,383 + +3.0
1,896,404 + -0.6
1,896,405 - -1.1
1,896,457 + +0.8
1,896,457 + +1.0
1,896,457 + +0.5
1,896,457 + +1.0
1,896,458 - +1.0
1,896,458 - +0.5
1,896,458 - -1.9
1,896,460 + -1.7
1,896,461 - -1.2
1,896,475 + -0.3
1,896,476 - -0.8
1,896,478 - +0.9
1,896,483 - -0.0
1,896,483 - -0.9
1,896,511 + -1.3
1,896,521 - +1.1
1,896,537 + +0.7
1,896,537 + -1.1
1,896,556 - -0.3
1,896,598 + -2.1
1,896,598 + +0.3
1,896,598 + +2.2
1,896,652 - +0.7
1,896,662 + +0.2
1,896,662 + +0.2
1,896,662 + -0.9
1,896,662 + -0.1
1,896,662 + -0.3
1,896,678 + +0.7
1,897,044 + greA NOLOHH_09845 0.78 -1.1
1,897,124 + -0.3
1,897,124 + +0.0
1,897,124 + +0.7
1,897,128 + -0.9
1,897,129 - +0.7
1,897,138 + -0.4
1,897,138 + -0.2
1,897,138 + -0.3
1,897,176 - +0.7
1,897,181 - +0.7
1,897,213 + +1.7
1,897,213 + -1.7
1,897,214 - +1.9
1,897,214 - -0.9
1,897,269 + -0.4
1,897,269 + -1.0
1,897,269 + -0.5
1,897,269 + +0.1
1,897,292 + -0.3
1,897,322 + -0.1
1,897,322 + +0.5
1,897,323 - -1.8
1,897,331 + -0.6
1,897,359 - yhbY NOLOHH_09850 0.19 -0.9
1,897,376 + yhbY NOLOHH_09850 0.25 -0.1
1,897,377 - yhbY NOLOHH_09850 0.26 -0.6
1,897,377 - yhbY NOLOHH_09850 0.26 -0.7
1,897,400 + yhbY NOLOHH_09850 0.33 -0.3
1,897,474 - yhbY NOLOHH_09850 0.59 -2.6
1,897,580 + +0.7
1,897,580 + +0.7
1,897,581 - -2.1
1,897,609 + +2.3
1,897,610 - -0.9
1,897,651 + +2.3
1,897,651 + +0.7
1,897,653 + -2.1
1,897,653 + -0.3
1,897,653 + -0.3
1,897,653 + -1.6
1,897,653 + -0.9
1,897,654 - -0.9
1,897,663 + -2.6
1,897,663 + +1.3
1,897,701 + +1.7

Or see this region's nucleotide sequence