Experiment: Control_ECOR27
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt lptB and lptA are separated by 6 nucleotides lptA and lptC overlap by 32 nucleotides lptC and kdsC overlap by 4 nucleotides kdsC and kdsD are separated by 20 nucleotides
NOLOHH_09745: lptB - LPS export ABC transporter ATP-binding protein, at 1,880,862 to 1,881,587
lptB
NOLOHH_09750: lptA - lipopolysaccharide ABC transporter substrate-binding protein LptA, at 1,881,594 to 1,882,151
lptA
NOLOHH_09755: lptC - LPS export ABC transporter periplasmic protein LptC, at 1,882,120 to 1,882,695
lptC
NOLOHH_09760: kdsC - 3-deoxy-manno-octulosonate-8-phosphatase KdsC, at 1,882,692 to 1,883,258
kdsC
NOLOHH_09765: kdsD - arabinose-5-phosphate isomerase KdsD, at 1,883,279 to 1,884,265
kdsD
Position (kb) 1882
1883 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1881.600 kb on - strand at 1882.196 kb on - strand, within lptC at 1882.196 kb on - strand, within lptC at 1882.228 kb on - strand, within lptC at 1882.242 kb on - strand, within lptC at 1882.242 kb on - strand, within lptC at 1882.267 kb on - strand, within lptC at 1882.267 kb on - strand, within lptC at 1882.267 kb on - strand, within lptC at 1882.741 kb on - strand at 1882.744 kb on - strand at 1882.796 kb on - strand, within kdsC at 1882.895 kb on - strand, within kdsC at 1882.895 kb on - strand, within kdsC at 1882.895 kb on - strand, within kdsC at 1883.040 kb on - strand, within kdsC at 1883.130 kb on - strand, within kdsC at 1883.200 kb on - strand, within kdsC at 1883.286 kb on - strand at 1883.301 kb on - strand at 1883.312 kb on - strand at 1883.312 kb on - strand at 1883.312 kb on - strand at 1883.312 kb on - strand at 1883.312 kb on - strand at 1883.312 kb on - strand at 1883.312 kb on - strand at 1883.312 kb on - strand at 1883.312 kb on - strand at 1883.316 kb on - strand at 1883.316 kb on - strand at 1883.316 kb on - strand at 1883.316 kb on - strand at 1883.316 kb on - strand at 1883.328 kb on - strand at 1883.328 kb on - strand at 1883.379 kb on - strand, within kdsD at 1883.421 kb on - strand, within kdsD at 1883.421 kb on - strand, within kdsD at 1883.421 kb on - strand, within kdsD at 1883.450 kb on - strand, within kdsD at 1883.454 kb on - strand, within kdsD at 1883.493 kb on - strand, within kdsD at 1883.493 kb on - strand, within kdsD at 1883.528 kb on - strand, within kdsD at 1883.552 kb on - strand, within kdsD at 1883.639 kb on - strand, within kdsD at 1883.639 kb on - strand, within kdsD at 1883.639 kb on - strand, within kdsD at 1883.639 kb on - strand, within kdsD at 1883.642 kb on - strand, within kdsD at 1883.642 kb on - strand, within kdsD at 1883.642 kb on - strand, within kdsD at 1883.648 kb on + strand, within kdsD at 1883.666 kb on - strand, within kdsD
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECOR27 remove 1,881,600 - +0.7 1,882,196 - lptC NOLOHH_09755 0.13 -1.6 1,882,196 - lptC NOLOHH_09755 0.13 -2.0 1,882,228 - lptC NOLOHH_09755 0.19 -0.1 1,882,242 - lptC NOLOHH_09755 0.21 -0.5 1,882,242 - lptC NOLOHH_09755 0.21 -1.2 1,882,267 - lptC NOLOHH_09755 0.26 -0.9 1,882,267 - lptC NOLOHH_09755 0.26 -0.5 1,882,267 - lptC NOLOHH_09755 0.26 +0.0 1,882,741 - -1.0 1,882,744 - -1.5 1,882,796 - kdsC NOLOHH_09760 0.18 +0.7 1,882,895 - kdsC NOLOHH_09760 0.36 -2.1 1,882,895 - kdsC NOLOHH_09760 0.36 -1.9 1,882,895 - kdsC NOLOHH_09760 0.36 +1.1 1,883,040 - kdsC NOLOHH_09760 0.61 -1.1 1,883,130 - kdsC NOLOHH_09760 0.77 -1.1 1,883,200 - kdsC NOLOHH_09760 0.90 +0.4 1,883,286 - -0.6 1,883,301 - -1.1 1,883,312 - -0.2 1,883,312 - -0.2 1,883,312 - -2.1 1,883,312 - -0.9 1,883,312 - -0.1 1,883,312 - -1.7 1,883,312 - -0.3 1,883,312 - -1.5 1,883,312 - +0.8 1,883,316 - -1.3 1,883,316 - +1.3 1,883,316 - -0.4 1,883,316 - +0.2 1,883,316 - +0.0 1,883,328 - +0.7 1,883,328 - +0.7 1,883,379 - kdsD NOLOHH_09765 0.10 -0.3 1,883,421 - kdsD NOLOHH_09765 0.14 +0.4 1,883,421 - kdsD NOLOHH_09765 0.14 +1.5 1,883,421 - kdsD NOLOHH_09765 0.14 -0.7 1,883,450 - kdsD NOLOHH_09765 0.17 -3.2 1,883,454 - kdsD NOLOHH_09765 0.18 +2.0 1,883,493 - kdsD NOLOHH_09765 0.22 -0.6 1,883,493 - kdsD NOLOHH_09765 0.22 -1.0 1,883,528 - kdsD NOLOHH_09765 0.25 +0.1 1,883,552 - kdsD NOLOHH_09765 0.28 +0.6 1,883,639 - kdsD NOLOHH_09765 0.36 -0.8 1,883,639 - kdsD NOLOHH_09765 0.36 -0.6 1,883,639 - kdsD NOLOHH_09765 0.36 -0.0 1,883,639 - kdsD NOLOHH_09765 0.36 +0.7 1,883,642 - kdsD NOLOHH_09765 0.37 +0.1 1,883,642 - kdsD NOLOHH_09765 0.37 +1.7 1,883,642 - kdsD NOLOHH_09765 0.37 -0.9 1,883,648 + kdsD NOLOHH_09765 0.37 -0.6 1,883,666 - kdsD NOLOHH_09765 0.39 -1.3
Or see this region's nucleotide sequence