Experiment: Control_ECOR27
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NOLOHH_08705 and NOLOHH_08710 are separated by 2 nucleotides NOLOHH_08710 and NOLOHH_08715 are separated by 2 nucleotides NOLOHH_08715 and glpD are separated by 53 nucleotides
NOLOHH_08705: NOLOHH_08705 - YjgN_1 protein, at 1,687,408 to 1,688,118
_08705
NOLOHH_08710: NOLOHH_08710 - hypothetical protein, at 1,688,121 to 1,688,888
_08710
NOLOHH_08715: NOLOHH_08715 - Ybl142, at 1,688,891 to 1,689,496
_08715
NOLOHH_08720: glpD - glycerol-3-phosphate dehydrogenase, at 1,689,550 to 1,691,055
glpD
Position (kb)
1688
1689
1690 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1687.926 kb on + strand, within NOLOHH_08705 at 1687.949 kb on - strand, within NOLOHH_08705 at 1687.960 kb on + strand, within NOLOHH_08705 at 1687.961 kb on - strand, within NOLOHH_08705 at 1688.004 kb on + strand, within NOLOHH_08705 at 1688.005 kb on - strand, within NOLOHH_08705 at 1688.005 kb on - strand, within NOLOHH_08705 at 1688.117 kb on - strand at 1688.121 kb on - strand at 1688.121 kb on - strand at 1688.245 kb on + strand, within NOLOHH_08710 at 1688.256 kb on - strand, within NOLOHH_08710 at 1688.256 kb on - strand, within NOLOHH_08710 at 1688.301 kb on - strand, within NOLOHH_08710 at 1688.303 kb on + strand, within NOLOHH_08710 at 1688.404 kb on + strand, within NOLOHH_08710 at 1688.492 kb on + strand, within NOLOHH_08710 at 1688.531 kb on - strand, within NOLOHH_08710 at 1688.535 kb on + strand, within NOLOHH_08710 at 1688.535 kb on + strand, within NOLOHH_08710 at 1688.537 kb on + strand, within NOLOHH_08710 at 1688.538 kb on - strand, within NOLOHH_08710 at 1688.594 kb on + strand, within NOLOHH_08710 at 1688.650 kb on - strand, within NOLOHH_08710 at 1688.661 kb on + strand, within NOLOHH_08710 at 1688.662 kb on - strand, within NOLOHH_08710 at 1688.856 kb on + strand at 1688.857 kb on - strand at 1688.857 kb on - strand at 1688.857 kb on - strand at 1688.857 kb on - strand at 1688.988 kb on + strand, within NOLOHH_08715 at 1689.047 kb on - strand, within NOLOHH_08715 at 1689.105 kb on + strand, within NOLOHH_08715 at 1689.106 kb on - strand, within NOLOHH_08715 at 1689.229 kb on + strand, within NOLOHH_08715 at 1689.380 kb on + strand, within NOLOHH_08715 at 1689.383 kb on + strand, within NOLOHH_08715 at 1689.383 kb on + strand, within NOLOHH_08715 at 1689.489 kb on + strand at 1689.499 kb on - strand at 1689.503 kb on + strand at 1689.579 kb on + strand at 1689.579 kb on + strand at 1689.579 kb on + strand at 1689.580 kb on - strand at 1689.580 kb on - strand at 1689.582 kb on - strand at 1689.698 kb on + strand at 1689.716 kb on + strand, within glpD at 1689.716 kb on + strand, within glpD at 1689.795 kb on - strand, within glpD at 1689.806 kb on + strand, within glpD at 1689.807 kb on - strand, within glpD at 1689.939 kb on - strand, within glpD at 1690.055 kb on + strand, within glpD at 1690.055 kb on + strand, within glpD at 1690.144 kb on + strand, within glpD at 1690.167 kb on + strand, within glpD at 1690.169 kb on + strand, within glpD at 1690.170 kb on - strand, within glpD at 1690.170 kb on - strand, within glpD at 1690.185 kb on - strand, within glpD at 1690.232 kb on + strand, within glpD at 1690.233 kb on - strand, within glpD at 1690.233 kb on - strand, within glpD at 1690.293 kb on + strand, within glpD at 1690.294 kb on - strand, within glpD at 1690.294 kb on - strand, within glpD at 1690.294 kb on - strand, within glpD at 1690.294 kb on - strand, within glpD at 1690.300 kb on - strand, within glpD at 1690.320 kb on - strand, within glpD at 1690.320 kb on - strand, within glpD at 1690.356 kb on + strand, within glpD at 1690.357 kb on - strand, within glpD at 1690.386 kb on - strand, within glpD at 1690.470 kb on + strand, within glpD at 1690.471 kb on - strand, within glpD
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECOR27 remove 1,687,926 + NOLOHH_08705 0.73 -0.7 1,687,949 - NOLOHH_08705 0.76 -0.7 1,687,960 + NOLOHH_08705 0.78 -0.0 1,687,961 - NOLOHH_08705 0.78 -1.1 1,688,004 + NOLOHH_08705 0.84 -0.3 1,688,005 - NOLOHH_08705 0.84 -0.5 1,688,005 - NOLOHH_08705 0.84 +0.9 1,688,117 - -0.3 1,688,121 - -0.7 1,688,121 - -1.5 1,688,245 + NOLOHH_08710 0.16 -1.2 1,688,256 - NOLOHH_08710 0.18 -0.5 1,688,256 - NOLOHH_08710 0.18 +0.2 1,688,301 - NOLOHH_08710 0.23 -0.6 1,688,303 + NOLOHH_08710 0.24 -0.9 1,688,404 + NOLOHH_08710 0.37 -0.0 1,688,492 + NOLOHH_08710 0.48 +0.2 1,688,531 - NOLOHH_08710 0.53 +0.4 1,688,535 + NOLOHH_08710 0.54 +0.6 1,688,535 + NOLOHH_08710 0.54 -1.3 1,688,537 + NOLOHH_08710 0.54 -0.9 1,688,538 - NOLOHH_08710 0.54 +0.4 1,688,594 + NOLOHH_08710 0.62 +1.2 1,688,650 - NOLOHH_08710 0.69 +0.1 1,688,661 + NOLOHH_08710 0.70 -1.6 1,688,662 - NOLOHH_08710 0.70 +0.3 1,688,856 + -0.4 1,688,857 - -0.9 1,688,857 - +0.5 1,688,857 - +0.7 1,688,857 - +0.7 1,688,988 + NOLOHH_08715 0.16 -0.9 1,689,047 - NOLOHH_08715 0.26 -2.6 1,689,105 + NOLOHH_08715 0.35 -0.2 1,689,106 - NOLOHH_08715 0.35 -0.3 1,689,229 + NOLOHH_08715 0.56 -1.2 1,689,380 + NOLOHH_08715 0.81 -0.4 1,689,383 + NOLOHH_08715 0.81 -0.8 1,689,383 + NOLOHH_08715 0.81 -0.5 1,689,489 + -0.3 1,689,499 - -1.1 1,689,503 + -0.8 1,689,579 + -0.4 1,689,579 + -0.4 1,689,579 + -1.6 1,689,580 - +0.3 1,689,580 - +0.1 1,689,582 - +0.5 1,689,698 + +0.7 1,689,716 + glpD NOLOHH_08720 0.11 -0.3 1,689,716 + glpD NOLOHH_08720 0.11 -0.3 1,689,795 - glpD NOLOHH_08720 0.16 -1.8 1,689,806 + glpD NOLOHH_08720 0.17 -0.9 1,689,807 - glpD NOLOHH_08720 0.17 -0.3 1,689,939 - glpD NOLOHH_08720 0.26 -0.9 1,690,055 + glpD NOLOHH_08720 0.34 +0.1 1,690,055 + glpD NOLOHH_08720 0.34 -0.3 1,690,144 + glpD NOLOHH_08720 0.39 +0.7 1,690,167 + glpD NOLOHH_08720 0.41 -1.3 1,690,169 + glpD NOLOHH_08720 0.41 +0.7 1,690,170 - glpD NOLOHH_08720 0.41 -0.3 1,690,170 - glpD NOLOHH_08720 0.41 -1.9 1,690,185 - glpD NOLOHH_08720 0.42 -2.9 1,690,232 + glpD NOLOHH_08720 0.45 +0.7 1,690,233 - glpD NOLOHH_08720 0.45 -2.3 1,690,233 - glpD NOLOHH_08720 0.45 -1.3 1,690,293 + glpD NOLOHH_08720 0.49 -0.3 1,690,294 - glpD NOLOHH_08720 0.49 -1.3 1,690,294 - glpD NOLOHH_08720 0.49 +0.7 1,690,294 - glpD NOLOHH_08720 0.49 +1.3 1,690,294 - glpD NOLOHH_08720 0.49 -1.6 1,690,300 - glpD NOLOHH_08720 0.50 -0.3 1,690,320 - glpD NOLOHH_08720 0.51 -1.3 1,690,320 - glpD NOLOHH_08720 0.51 +0.7 1,690,356 + glpD NOLOHH_08720 0.54 +0.7 1,690,357 - glpD NOLOHH_08720 0.54 -0.3 1,690,386 - glpD NOLOHH_08720 0.56 -0.3 1,690,470 + glpD NOLOHH_08720 0.61 -0.9 1,690,471 - glpD NOLOHH_08720 0.61 -2.1
Or see this region's nucleotide sequence