Strain Fitness in Escherichia coli ECOR27 around NOLOHH_08715

Experiment: Control_ECOR27

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNOLOHH_08705 and NOLOHH_08710 are separated by 2 nucleotidesNOLOHH_08710 and NOLOHH_08715 are separated by 2 nucleotidesNOLOHH_08715 and glpD are separated by 53 nucleotides NOLOHH_08705: NOLOHH_08705 - YjgN_1 protein, at 1,687,408 to 1,688,118 _08705 NOLOHH_08710: NOLOHH_08710 - hypothetical protein, at 1,688,121 to 1,688,888 _08710 NOLOHH_08715: NOLOHH_08715 - Ybl142, at 1,688,891 to 1,689,496 _08715 NOLOHH_08720: glpD - glycerol-3-phosphate dehydrogenase, at 1,689,550 to 1,691,055 glpD Position (kb) 1688 1689 1690Strain fitness (log2 ratio) -3 -2 -1 0 1at 1687.926 kb on + strand, within NOLOHH_08705at 1687.949 kb on - strand, within NOLOHH_08705at 1687.960 kb on + strand, within NOLOHH_08705at 1687.961 kb on - strand, within NOLOHH_08705at 1688.004 kb on + strand, within NOLOHH_08705at 1688.005 kb on - strand, within NOLOHH_08705at 1688.005 kb on - strand, within NOLOHH_08705at 1688.117 kb on - strandat 1688.121 kb on - strandat 1688.121 kb on - strandat 1688.245 kb on + strand, within NOLOHH_08710at 1688.256 kb on - strand, within NOLOHH_08710at 1688.256 kb on - strand, within NOLOHH_08710at 1688.301 kb on - strand, within NOLOHH_08710at 1688.303 kb on + strand, within NOLOHH_08710at 1688.404 kb on + strand, within NOLOHH_08710at 1688.492 kb on + strand, within NOLOHH_08710at 1688.531 kb on - strand, within NOLOHH_08710at 1688.535 kb on + strand, within NOLOHH_08710at 1688.535 kb on + strand, within NOLOHH_08710at 1688.537 kb on + strand, within NOLOHH_08710at 1688.538 kb on - strand, within NOLOHH_08710at 1688.594 kb on + strand, within NOLOHH_08710at 1688.650 kb on - strand, within NOLOHH_08710at 1688.661 kb on + strand, within NOLOHH_08710at 1688.662 kb on - strand, within NOLOHH_08710at 1688.856 kb on + strandat 1688.857 kb on - strandat 1688.857 kb on - strandat 1688.857 kb on - strandat 1688.857 kb on - strandat 1688.988 kb on + strand, within NOLOHH_08715at 1689.047 kb on - strand, within NOLOHH_08715at 1689.105 kb on + strand, within NOLOHH_08715at 1689.106 kb on - strand, within NOLOHH_08715at 1689.229 kb on + strand, within NOLOHH_08715at 1689.380 kb on + strand, within NOLOHH_08715at 1689.383 kb on + strand, within NOLOHH_08715at 1689.383 kb on + strand, within NOLOHH_08715at 1689.489 kb on + strandat 1689.499 kb on - strandat 1689.503 kb on + strandat 1689.579 kb on + strandat 1689.579 kb on + strandat 1689.579 kb on + strandat 1689.580 kb on - strandat 1689.580 kb on - strandat 1689.582 kb on - strandat 1689.698 kb on + strandat 1689.716 kb on + strand, within glpDat 1689.716 kb on + strand, within glpDat 1689.795 kb on - strand, within glpDat 1689.806 kb on + strand, within glpDat 1689.807 kb on - strand, within glpDat 1689.939 kb on - strand, within glpDat 1690.055 kb on + strand, within glpDat 1690.055 kb on + strand, within glpDat 1690.144 kb on + strand, within glpDat 1690.167 kb on + strand, within glpDat 1690.169 kb on + strand, within glpDat 1690.170 kb on - strand, within glpDat 1690.170 kb on - strand, within glpDat 1690.185 kb on - strand, within glpDat 1690.232 kb on + strand, within glpDat 1690.233 kb on - strand, within glpDat 1690.233 kb on - strand, within glpDat 1690.293 kb on + strand, within glpDat 1690.294 kb on - strand, within glpDat 1690.294 kb on - strand, within glpDat 1690.294 kb on - strand, within glpDat 1690.294 kb on - strand, within glpDat 1690.300 kb on - strand, within glpDat 1690.320 kb on - strand, within glpDat 1690.320 kb on - strand, within glpDat 1690.356 kb on + strand, within glpDat 1690.357 kb on - strand, within glpDat 1690.386 kb on - strand, within glpDat 1690.470 kb on + strand, within glpDat 1690.471 kb on - strand, within glpD

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECOR27
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1,687,926 + NOLOHH_08705 0.73 -0.7
1,687,949 - NOLOHH_08705 0.76 -0.7
1,687,960 + NOLOHH_08705 0.78 -0.0
1,687,961 - NOLOHH_08705 0.78 -1.1
1,688,004 + NOLOHH_08705 0.84 -0.3
1,688,005 - NOLOHH_08705 0.84 -0.5
1,688,005 - NOLOHH_08705 0.84 +0.9
1,688,117 - -0.3
1,688,121 - -0.7
1,688,121 - -1.5
1,688,245 + NOLOHH_08710 0.16 -1.2
1,688,256 - NOLOHH_08710 0.18 -0.5
1,688,256 - NOLOHH_08710 0.18 +0.2
1,688,301 - NOLOHH_08710 0.23 -0.6
1,688,303 + NOLOHH_08710 0.24 -0.9
1,688,404 + NOLOHH_08710 0.37 -0.0
1,688,492 + NOLOHH_08710 0.48 +0.2
1,688,531 - NOLOHH_08710 0.53 +0.4
1,688,535 + NOLOHH_08710 0.54 +0.6
1,688,535 + NOLOHH_08710 0.54 -1.3
1,688,537 + NOLOHH_08710 0.54 -0.9
1,688,538 - NOLOHH_08710 0.54 +0.4
1,688,594 + NOLOHH_08710 0.62 +1.2
1,688,650 - NOLOHH_08710 0.69 +0.1
1,688,661 + NOLOHH_08710 0.70 -1.6
1,688,662 - NOLOHH_08710 0.70 +0.3
1,688,856 + -0.4
1,688,857 - -0.9
1,688,857 - +0.5
1,688,857 - +0.7
1,688,857 - +0.7
1,688,988 + NOLOHH_08715 0.16 -0.9
1,689,047 - NOLOHH_08715 0.26 -2.6
1,689,105 + NOLOHH_08715 0.35 -0.2
1,689,106 - NOLOHH_08715 0.35 -0.3
1,689,229 + NOLOHH_08715 0.56 -1.2
1,689,380 + NOLOHH_08715 0.81 -0.4
1,689,383 + NOLOHH_08715 0.81 -0.8
1,689,383 + NOLOHH_08715 0.81 -0.5
1,689,489 + -0.3
1,689,499 - -1.1
1,689,503 + -0.8
1,689,579 + -0.4
1,689,579 + -0.4
1,689,579 + -1.6
1,689,580 - +0.3
1,689,580 - +0.1
1,689,582 - +0.5
1,689,698 + +0.7
1,689,716 + glpD NOLOHH_08720 0.11 -0.3
1,689,716 + glpD NOLOHH_08720 0.11 -0.3
1,689,795 - glpD NOLOHH_08720 0.16 -1.8
1,689,806 + glpD NOLOHH_08720 0.17 -0.9
1,689,807 - glpD NOLOHH_08720 0.17 -0.3
1,689,939 - glpD NOLOHH_08720 0.26 -0.9
1,690,055 + glpD NOLOHH_08720 0.34 +0.1
1,690,055 + glpD NOLOHH_08720 0.34 -0.3
1,690,144 + glpD NOLOHH_08720 0.39 +0.7
1,690,167 + glpD NOLOHH_08720 0.41 -1.3
1,690,169 + glpD NOLOHH_08720 0.41 +0.7
1,690,170 - glpD NOLOHH_08720 0.41 -0.3
1,690,170 - glpD NOLOHH_08720 0.41 -1.9
1,690,185 - glpD NOLOHH_08720 0.42 -2.9
1,690,232 + glpD NOLOHH_08720 0.45 +0.7
1,690,233 - glpD NOLOHH_08720 0.45 -2.3
1,690,233 - glpD NOLOHH_08720 0.45 -1.3
1,690,293 + glpD NOLOHH_08720 0.49 -0.3
1,690,294 - glpD NOLOHH_08720 0.49 -1.3
1,690,294 - glpD NOLOHH_08720 0.49 +0.7
1,690,294 - glpD NOLOHH_08720 0.49 +1.3
1,690,294 - glpD NOLOHH_08720 0.49 -1.6
1,690,300 - glpD NOLOHH_08720 0.50 -0.3
1,690,320 - glpD NOLOHH_08720 0.51 -1.3
1,690,320 - glpD NOLOHH_08720 0.51 +0.7
1,690,356 + glpD NOLOHH_08720 0.54 +0.7
1,690,357 - glpD NOLOHH_08720 0.54 -0.3
1,690,386 - glpD NOLOHH_08720 0.56 -0.3
1,690,470 + glpD NOLOHH_08720 0.61 -0.9
1,690,471 - glpD NOLOHH_08720 0.61 -2.1

Or see this region's nucleotide sequence