Strain Fitness in Escherichia coli ECOR27 around NOLOHH_08305

Experiment: Control_ECOR27

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNOLOHH_08300 and NOLOHH_08305 are separated by 107 nucleotidesNOLOHH_08305 and arsC are separated by 122 nucleotidesarsC and arsB are separated by 12 nucleotides NOLOHH_08300: NOLOHH_08300 - putative permease, at 1,601,103 to 1,602,116 _08300 NOLOHH_08305: NOLOHH_08305 - transcriptional regulator, at 1,602,224 to 1,602,520 _08305 NOLOHH_08310: arsC - glutaredoxin-dependent arsenate reductase, at 1,602,643 to 1,603,068 arsC NOLOHH_08315: arsB - arsenite/antimonite:H(+) antiporter ArsB, at 1,603,081 to 1,604,370 arsB Position (kb) 1602 1603Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1601.245 kb on - strand, within NOLOHH_08300at 1601.245 kb on - strand, within NOLOHH_08300at 1601.323 kb on + strand, within NOLOHH_08300at 1601.324 kb on - strand, within NOLOHH_08300at 1601.408 kb on + strand, within NOLOHH_08300at 1601.420 kb on + strand, within NOLOHH_08300at 1601.421 kb on - strand, within NOLOHH_08300at 1601.433 kb on + strand, within NOLOHH_08300at 1601.434 kb on - strand, within NOLOHH_08300at 1601.460 kb on + strand, within NOLOHH_08300at 1601.460 kb on + strand, within NOLOHH_08300at 1601.461 kb on - strand, within NOLOHH_08300at 1601.496 kb on + strand, within NOLOHH_08300at 1601.503 kb on - strand, within NOLOHH_08300at 1601.513 kb on + strand, within NOLOHH_08300at 1601.513 kb on + strand, within NOLOHH_08300at 1601.513 kb on + strand, within NOLOHH_08300at 1601.513 kb on + strand, within NOLOHH_08300at 1601.513 kb on + strand, within NOLOHH_08300at 1601.579 kb on + strand, within NOLOHH_08300at 1601.596 kb on - strand, within NOLOHH_08300at 1601.603 kb on + strand, within NOLOHH_08300at 1601.603 kb on + strand, within NOLOHH_08300at 1601.603 kb on + strand, within NOLOHH_08300at 1601.603 kb on + strand, within NOLOHH_08300at 1601.603 kb on + strand, within NOLOHH_08300at 1601.603 kb on + strand, within NOLOHH_08300at 1601.604 kb on - strand, within NOLOHH_08300at 1601.604 kb on - strand, within NOLOHH_08300at 1601.604 kb on - strand, within NOLOHH_08300at 1601.604 kb on - strand, within NOLOHH_08300at 1601.604 kb on - strand, within NOLOHH_08300at 1601.604 kb on - strand, within NOLOHH_08300at 1601.604 kb on - strand, within NOLOHH_08300at 1601.605 kb on + strand, within NOLOHH_08300at 1601.605 kb on + strand, within NOLOHH_08300at 1601.605 kb on + strand, within NOLOHH_08300at 1601.606 kb on - strand, within NOLOHH_08300at 1601.606 kb on - strand, within NOLOHH_08300at 1601.606 kb on - strand, within NOLOHH_08300at 1601.684 kb on + strand, within NOLOHH_08300at 1601.755 kb on + strand, within NOLOHH_08300at 1601.794 kb on - strand, within NOLOHH_08300at 1601.794 kb on - strand, within NOLOHH_08300at 1601.794 kb on - strand, within NOLOHH_08300at 1601.813 kb on + strand, within NOLOHH_08300at 1601.813 kb on + strand, within NOLOHH_08300at 1601.814 kb on - strand, within NOLOHH_08300at 1601.817 kb on + strand, within NOLOHH_08300at 1601.817 kb on + strand, within NOLOHH_08300at 1601.817 kb on + strand, within NOLOHH_08300at 1601.833 kb on - strand, within NOLOHH_08300at 1601.883 kb on + strand, within NOLOHH_08300at 1601.883 kb on + strand, within NOLOHH_08300at 1601.884 kb on - strand, within NOLOHH_08300at 1601.884 kb on - strand, within NOLOHH_08300at 1601.906 kb on + strand, within NOLOHH_08300at 1601.947 kb on + strand, within NOLOHH_08300at 1601.987 kb on + strand, within NOLOHH_08300at 1602.038 kb on + strandat 1602.038 kb on + strandat 1602.038 kb on + strandat 1602.038 kb on + strandat 1602.110 kb on + strandat 1602.110 kb on + strandat 1602.110 kb on + strandat 1602.110 kb on + strandat 1602.111 kb on - strandat 1602.111 kb on - strandat 1602.111 kb on - strandat 1602.111 kb on - strandat 1602.116 kb on + strandat 1602.116 kb on + strandat 1602.116 kb on + strandat 1602.116 kb on + strandat 1602.120 kb on + strandat 1602.120 kb on + strandat 1602.120 kb on + strandat 1602.121 kb on - strandat 1602.223 kb on + strandat 1602.223 kb on + strandat 1602.223 kb on + strandat 1602.224 kb on - strandat 1602.224 kb on - strandat 1602.224 kb on - strandat 1602.224 kb on - strandat 1602.224 kb on - strandat 1602.224 kb on - strandat 1602.244 kb on + strandat 1602.262 kb on - strand, within NOLOHH_08305at 1602.285 kb on + strand, within NOLOHH_08305at 1602.364 kb on + strand, within NOLOHH_08305at 1602.364 kb on + strand, within NOLOHH_08305at 1602.379 kb on + strand, within NOLOHH_08305at 1602.380 kb on - strand, within NOLOHH_08305at 1602.394 kb on - strand, within NOLOHH_08305at 1602.453 kb on - strand, within NOLOHH_08305at 1602.501 kb on + strandat 1602.501 kb on + strandat 1602.501 kb on + strandat 1602.501 kb on + strandat 1602.501 kb on + strandat 1602.502 kb on - strandat 1602.502 kb on - strandat 1602.502 kb on - strandat 1602.502 kb on - strandat 1602.561 kb on + strandat 1602.598 kb on - strandat 1602.620 kb on + strandat 1602.620 kb on + strandat 1602.620 kb on + strandat 1602.841 kb on - strand, within arsCat 1602.847 kb on - strand, within arsCat 1602.872 kb on + strand, within arsCat 1602.889 kb on - strand, within arsCat 1602.889 kb on - strand, within arsCat 1602.969 kb on - strand, within arsCat 1602.969 kb on - strand, within arsCat 1602.971 kb on + strand, within arsCat 1602.971 kb on + strand, within arsCat 1602.971 kb on + strand, within arsCat 1602.971 kb on + strand, within arsCat 1602.972 kb on - strand, within arsCat 1602.972 kb on - strand, within arsCat 1602.972 kb on - strand, within arsCat 1602.972 kb on - strand, within arsCat 1602.976 kb on - strand, within arsCat 1602.976 kb on - strand, within arsCat 1603.018 kb on - strand, within arsCat 1603.018 kb on - strand, within arsCat 1603.021 kb on - strand, within arsCat 1603.029 kb on + strandat 1603.029 kb on + strandat 1603.030 kb on - strandat 1603.030 kb on - strandat 1603.050 kb on - strandat 1603.056 kb on + strandat 1603.069 kb on - strandat 1603.069 kb on - strandat 1603.074 kb on + strandat 1603.075 kb on - strandat 1603.075 kb on - strandat 1603.075 kb on - strandat 1603.075 kb on - strandat 1603.075 kb on - strandat 1603.082 kb on + strandat 1603.083 kb on - strandat 1603.083 kb on - strandat 1603.102 kb on + strandat 1603.149 kb on + strandat 1603.150 kb on - strandat 1603.150 kb on - strandat 1603.150 kb on - strandat 1603.166 kb on + strandat 1603.166 kb on + strandat 1603.166 kb on + strandat 1603.166 kb on + strandat 1603.167 kb on - strandat 1603.167 kb on - strandat 1603.182 kb on + strandat 1603.182 kb on + strandat 1603.182 kb on + strandat 1603.182 kb on + strandat 1603.183 kb on - strandat 1603.188 kb on + strandat 1603.188 kb on + strandat 1603.189 kb on - strandat 1603.189 kb on - strandat 1603.189 kb on - strandat 1603.204 kb on + strandat 1603.284 kb on - strand, within arsBat 1603.349 kb on - strand, within arsBat 1603.360 kb on - strand, within arsBat 1603.368 kb on + strand, within arsBat 1603.369 kb on - strand, within arsBat 1603.371 kb on + strand, within arsBat 1603.371 kb on + strand, within arsBat 1603.371 kb on + strand, within arsBat 1603.372 kb on - strand, within arsBat 1603.372 kb on - strand, within arsBat 1603.372 kb on - strand, within arsBat 1603.372 kb on - strand, within arsBat 1603.372 kb on - strand, within arsBat 1603.447 kb on + strand, within arsBat 1603.448 kb on - strand, within arsBat 1603.448 kb on - strand, within arsBat 1603.460 kb on + strand, within arsBat 1603.461 kb on - strand, within arsBat 1603.461 kb on - strand, within arsBat 1603.502 kb on + strand, within arsBat 1603.502 kb on + strand, within arsBat 1603.503 kb on - strand, within arsBat 1603.503 kb on - strand, within arsBat 1603.503 kb on - strand, within arsBat 1603.503 kb on - strand, within arsBat 1603.503 kb on - strand, within arsBat 1603.503 kb on - strand, within arsBat 1603.503 kb on - strand, within arsBat 1603.503 kb on - strand, within arsB

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECOR27
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1,601,245 - NOLOHH_08300 0.14 +0.5
1,601,245 - NOLOHH_08300 0.14 +0.5
1,601,323 + NOLOHH_08300 0.22 -0.3
1,601,324 - NOLOHH_08300 0.22 -1.4
1,601,408 + NOLOHH_08300 0.30 -0.7
1,601,420 + NOLOHH_08300 0.31 +0.3
1,601,421 - NOLOHH_08300 0.31 +0.5
1,601,433 + NOLOHH_08300 0.33 +0.7
1,601,434 - NOLOHH_08300 0.33 -0.2
1,601,460 + NOLOHH_08300 0.35 -0.3
1,601,460 + NOLOHH_08300 0.35 +0.1
1,601,461 - NOLOHH_08300 0.35 -1.0
1,601,496 + NOLOHH_08300 0.39 -0.4
1,601,503 - NOLOHH_08300 0.39 -0.6
1,601,513 + NOLOHH_08300 0.40 +0.2
1,601,513 + NOLOHH_08300 0.40 +0.8
1,601,513 + NOLOHH_08300 0.40 +0.1
1,601,513 + NOLOHH_08300 0.40 +1.3
1,601,513 + NOLOHH_08300 0.40 -0.9
1,601,579 + NOLOHH_08300 0.47 -2.5
1,601,596 - NOLOHH_08300 0.49 +1.4
1,601,603 + NOLOHH_08300 0.49 -0.3
1,601,603 + NOLOHH_08300 0.49 +0.5
1,601,603 + NOLOHH_08300 0.49 +0.1
1,601,603 + NOLOHH_08300 0.49 -0.0
1,601,603 + NOLOHH_08300 0.49 -0.2
1,601,603 + NOLOHH_08300 0.49 +0.5
1,601,604 - NOLOHH_08300 0.49 -0.1
1,601,604 - NOLOHH_08300 0.49 +0.9
1,601,604 - NOLOHH_08300 0.49 -2.1
1,601,604 - NOLOHH_08300 0.49 +0.2
1,601,604 - NOLOHH_08300 0.49 +0.2
1,601,604 - NOLOHH_08300 0.49 +0.4
1,601,604 - NOLOHH_08300 0.49 -0.5
1,601,605 + NOLOHH_08300 0.50 +0.8
1,601,605 + NOLOHH_08300 0.50 -2.6
1,601,605 + NOLOHH_08300 0.50 +1.0
1,601,606 - NOLOHH_08300 0.50 -0.4
1,601,606 - NOLOHH_08300 0.50 +0.0
1,601,606 - NOLOHH_08300 0.50 +0.1
1,601,684 + NOLOHH_08300 0.57 +0.6
1,601,755 + NOLOHH_08300 0.64 +0.0
1,601,794 - NOLOHH_08300 0.68 +0.7
1,601,794 - NOLOHH_08300 0.68 -2.3
1,601,794 - NOLOHH_08300 0.68 -0.7
1,601,813 + NOLOHH_08300 0.70 +0.8
1,601,813 + NOLOHH_08300 0.70 -0.4
1,601,814 - NOLOHH_08300 0.70 -1.3
1,601,817 + NOLOHH_08300 0.70 +0.5
1,601,817 + NOLOHH_08300 0.70 -0.5
1,601,817 + NOLOHH_08300 0.70 -0.6
1,601,833 - NOLOHH_08300 0.72 -0.1
1,601,883 + NOLOHH_08300 0.77 +0.4
1,601,883 + NOLOHH_08300 0.77 -1.0
1,601,884 - NOLOHH_08300 0.77 -0.7
1,601,884 - NOLOHH_08300 0.77 -0.0
1,601,906 + NOLOHH_08300 0.79 +1.3
1,601,947 + NOLOHH_08300 0.83 -0.0
1,601,987 + NOLOHH_08300 0.87 -0.3
1,602,038 + +0.4
1,602,038 + -1.0
1,602,038 + -1.2
1,602,038 + +0.8
1,602,110 + -0.7
1,602,110 + +0.5
1,602,110 + +0.7
1,602,110 + -0.1
1,602,111 - -0.2
1,602,111 - -0.3
1,602,111 - -0.8
1,602,111 - +0.7
1,602,116 + +1.0
1,602,116 + +0.3
1,602,116 + -0.5
1,602,116 + +0.4
1,602,120 + -1.3
1,602,120 + -0.1
1,602,120 + +0.1
1,602,121 - +0.1
1,602,223 + -0.6
1,602,223 + +0.5
1,602,223 + +0.4
1,602,224 - +0.7
1,602,224 - -2.1
1,602,224 - -1.8
1,602,224 - +1.0
1,602,224 - -0.0
1,602,224 - +0.2
1,602,244 + +1.2
1,602,262 - NOLOHH_08305 0.13 -0.9
1,602,285 + NOLOHH_08305 0.21 -1.4
1,602,364 + NOLOHH_08305 0.47 -2.3
1,602,364 + NOLOHH_08305 0.47 -0.0
1,602,379 + NOLOHH_08305 0.52 -1.3
1,602,380 - NOLOHH_08305 0.53 +1.4
1,602,394 - NOLOHH_08305 0.57 -0.3
1,602,453 - NOLOHH_08305 0.77 -0.3
1,602,501 + +0.4
1,602,501 + -0.5
1,602,501 + +0.2
1,602,501 + +1.3
1,602,501 + -0.6
1,602,502 - -0.3
1,602,502 - +1.1
1,602,502 - -0.5
1,602,502 - +0.7
1,602,561 + -0.5
1,602,598 - +0.7
1,602,620 + +0.4
1,602,620 + -0.1
1,602,620 + -0.4
1,602,841 - arsC NOLOHH_08310 0.46 +0.1
1,602,847 - arsC NOLOHH_08310 0.48 -0.4
1,602,872 + arsC NOLOHH_08310 0.54 -0.7
1,602,889 - arsC NOLOHH_08310 0.58 +0.7
1,602,889 - arsC NOLOHH_08310 0.58 -0.4
1,602,969 - arsC NOLOHH_08310 0.77 -0.5
1,602,969 - arsC NOLOHH_08310 0.77 +2.7
1,602,971 + arsC NOLOHH_08310 0.77 +0.1
1,602,971 + arsC NOLOHH_08310 0.77 -0.3
1,602,971 + arsC NOLOHH_08310 0.77 +0.1
1,602,971 + arsC NOLOHH_08310 0.77 +0.6
1,602,972 - arsC NOLOHH_08310 0.77 -0.1
1,602,972 - arsC NOLOHH_08310 0.77 +2.3
1,602,972 - arsC NOLOHH_08310 0.77 -0.0
1,602,972 - arsC NOLOHH_08310 0.77 -0.4
1,602,976 - arsC NOLOHH_08310 0.78 -1.1
1,602,976 - arsC NOLOHH_08310 0.78 -0.4
1,603,018 - arsC NOLOHH_08310 0.88 +1.7
1,603,018 - arsC NOLOHH_08310 0.88 -0.4
1,603,021 - arsC NOLOHH_08310 0.89 +1.2
1,603,029 + -0.7
1,603,029 + -0.9
1,603,030 - -0.1
1,603,030 - -2.3
1,603,050 - -0.2
1,603,056 + -0.7
1,603,069 - +0.1
1,603,069 - +0.7
1,603,074 + +0.4
1,603,075 - -3.4
1,603,075 - +2.3
1,603,075 - +2.0
1,603,075 - -0.2
1,603,075 - +0.0
1,603,082 + -0.7
1,603,083 - -0.7
1,603,083 - -0.0
1,603,102 + -0.2
1,603,149 + -1.9
1,603,150 - -0.3
1,603,150 - +0.2
1,603,150 - -1.8
1,603,166 + +0.1
1,603,166 + -1.2
1,603,166 + -0.1
1,603,166 + -1.2
1,603,167 - -2.0
1,603,167 - -1.0
1,603,182 + +0.4
1,603,182 + -0.0
1,603,182 + +0.1
1,603,182 + -0.1
1,603,183 - +0.4
1,603,188 + +0.0
1,603,188 + -1.0
1,603,189 - -0.7
1,603,189 - +0.7
1,603,189 - +1.7
1,603,204 + +0.7
1,603,284 - arsB NOLOHH_08315 0.16 +1.5
1,603,349 - arsB NOLOHH_08315 0.21 +0.2
1,603,360 - arsB NOLOHH_08315 0.22 +2.0
1,603,368 + arsB NOLOHH_08315 0.22 +1.2
1,603,369 - arsB NOLOHH_08315 0.22 -0.3
1,603,371 + arsB NOLOHH_08315 0.22 -2.1
1,603,371 + arsB NOLOHH_08315 0.22 +1.2
1,603,371 + arsB NOLOHH_08315 0.22 +0.6
1,603,372 - arsB NOLOHH_08315 0.23 -1.2
1,603,372 - arsB NOLOHH_08315 0.23 +1.1
1,603,372 - arsB NOLOHH_08315 0.23 +1.0
1,603,372 - arsB NOLOHH_08315 0.23 +1.1
1,603,372 - arsB NOLOHH_08315 0.23 -0.5
1,603,447 + arsB NOLOHH_08315 0.28 +0.2
1,603,448 - arsB NOLOHH_08315 0.28 +0.4
1,603,448 - arsB NOLOHH_08315 0.28 +0.7
1,603,460 + arsB NOLOHH_08315 0.29 -0.3
1,603,461 - arsB NOLOHH_08315 0.29 +0.3
1,603,461 - arsB NOLOHH_08315 0.29 -0.0
1,603,502 + arsB NOLOHH_08315 0.33 -0.1
1,603,502 + arsB NOLOHH_08315 0.33 +0.2
1,603,503 - arsB NOLOHH_08315 0.33 -0.3
1,603,503 - arsB NOLOHH_08315 0.33 +0.5
1,603,503 - arsB NOLOHH_08315 0.33 -1.3
1,603,503 - arsB NOLOHH_08315 0.33 +0.4
1,603,503 - arsB NOLOHH_08315 0.33 -1.4
1,603,503 - arsB NOLOHH_08315 0.33 +0.0
1,603,503 - arsB NOLOHH_08315 0.33 +0.3
1,603,503 - arsB NOLOHH_08315 0.33 +0.5

Or see this region's nucleotide sequence