Experiment: Control_ECOR27
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yigE and uvrD are separated by 146 nucleotides uvrD and yigB are separated by 83 nucleotides yigB and xerC overlap by 1 nucleotides
NOLOHH_06535: yigE - Uncharacterized protein YigE, at 1,231,426 to 1,232,190
yigE
NOLOHH_06540: uvrD - DNA helicase II, at 1,232,337 to 1,234,499
uvrD
NOLOHH_06545: yigB - 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB, at 1,234,583 to 1,235,299
yigB
NOLOHH_06550: xerC - tyrosine recombinase XerC, at 1,235,299 to 1,236,195
xerC
Position (kb) 1232
1233
1234
1235 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1231.351 kb on + strand at 1231.351 kb on + strand at 1231.351 kb on + strand at 1231.422 kb on + strand at 1231.422 kb on + strand at 1231.422 kb on + strand at 1231.422 kb on + strand at 1231.422 kb on + strand at 1231.423 kb on - strand at 1231.423 kb on - strand at 1231.423 kb on - strand at 1231.423 kb on - strand at 1231.423 kb on - strand at 1231.423 kb on - strand at 1231.423 kb on - strand at 1231.423 kb on - strand at 1231.423 kb on - strand at 1231.500 kb on - strand at 1231.500 kb on - strand at 1231.500 kb on - strand at 1231.500 kb on - strand at 1231.567 kb on + strand, within yigE at 1231.567 kb on + strand, within yigE at 1231.567 kb on + strand, within yigE at 1231.567 kb on + strand, within yigE at 1231.567 kb on + strand, within yigE at 1231.568 kb on - strand, within yigE at 1231.570 kb on - strand, within yigE at 1231.640 kb on + strand, within yigE at 1231.640 kb on + strand, within yigE at 1231.640 kb on + strand, within yigE at 1231.640 kb on + strand, within yigE at 1231.640 kb on + strand, within yigE at 1231.641 kb on - strand, within yigE at 1231.641 kb on - strand, within yigE at 1231.705 kb on + strand, within yigE at 1231.706 kb on - strand, within yigE at 1231.706 kb on - strand, within yigE at 1231.706 kb on - strand, within yigE at 1231.717 kb on + strand, within yigE at 1231.717 kb on + strand, within yigE at 1231.717 kb on + strand, within yigE at 1231.735 kb on + strand, within yigE at 1231.735 kb on + strand, within yigE at 1231.736 kb on - strand, within yigE at 1231.819 kb on + strand, within yigE at 1231.820 kb on - strand, within yigE at 1231.834 kb on - strand, within yigE at 1231.834 kb on - strand, within yigE at 1231.925 kb on + strand, within yigE at 1231.926 kb on - strand, within yigE at 1231.929 kb on + strand, within yigE at 1231.929 kb on + strand, within yigE at 1231.929 kb on + strand, within yigE at 1231.938 kb on + strand, within yigE at 1231.962 kb on + strand, within yigE at 1231.989 kb on + strand, within yigE at 1231.989 kb on + strand, within yigE at 1231.989 kb on + strand, within yigE at 1231.989 kb on + strand, within yigE at 1231.990 kb on - strand, within yigE at 1231.990 kb on - strand, within yigE at 1232.053 kb on + strand, within yigE at 1232.089 kb on + strand, within yigE at 1232.112 kb on + strand, within yigE at 1232.112 kb on + strand, within yigE at 1232.112 kb on + strand, within yigE at 1232.112 kb on + strand, within yigE at 1232.112 kb on + strand, within yigE at 1232.113 kb on - strand, within yigE at 1232.113 kb on - strand, within yigE at 1232.113 kb on - strand, within yigE at 1232.116 kb on + strand at 1232.116 kb on + strand at 1232.116 kb on + strand at 1232.116 kb on + strand at 1232.116 kb on + strand at 1232.116 kb on + strand at 1232.116 kb on + strand at 1232.116 kb on + strand at 1232.116 kb on + strand at 1232.116 kb on + strand at 1232.116 kb on + strand at 1232.117 kb on - strand at 1232.117 kb on - strand at 1232.117 kb on - strand at 1232.119 kb on - strand at 1232.149 kb on + strand at 1232.211 kb on + strand at 1232.378 kb on + strand at 1232.379 kb on - strand at 1232.379 kb on - strand at 1232.379 kb on - strand at 1232.381 kb on + strand at 1232.463 kb on - strand at 1232.550 kb on + strand at 1232.551 kb on - strand at 1232.604 kb on - strand, within uvrD at 1232.623 kb on + strand, within uvrD at 1232.634 kb on - strand, within uvrD at 1232.660 kb on - strand, within uvrD at 1232.724 kb on + strand, within uvrD at 1232.765 kb on + strand, within uvrD at 1232.765 kb on + strand, within uvrD at 1232.765 kb on + strand, within uvrD at 1232.766 kb on - strand, within uvrD at 1232.766 kb on - strand, within uvrD at 1232.766 kb on - strand, within uvrD at 1232.786 kb on + strand, within uvrD at 1232.787 kb on - strand, within uvrD at 1232.917 kb on - strand, within uvrD at 1232.917 kb on - strand, within uvrD at 1232.917 kb on - strand, within uvrD at 1232.938 kb on + strand, within uvrD at 1232.938 kb on + strand, within uvrD at 1233.019 kb on + strand, within uvrD at 1233.019 kb on + strand, within uvrD at 1233.020 kb on - strand, within uvrD at 1233.020 kb on - strand, within uvrD at 1233.020 kb on - strand, within uvrD at 1233.044 kb on + strand, within uvrD at 1233.063 kb on + strand, within uvrD at 1233.064 kb on - strand, within uvrD at 1233.064 kb on - strand, within uvrD at 1233.108 kb on + strand, within uvrD at 1233.116 kb on + strand, within uvrD at 1233.126 kb on + strand, within uvrD at 1233.196 kb on - strand, within uvrD at 1233.222 kb on + strand, within uvrD at 1233.319 kb on + strand, within uvrD at 1233.319 kb on + strand, within uvrD at 1233.319 kb on + strand, within uvrD at 1233.320 kb on - strand, within uvrD at 1233.320 kb on - strand, within uvrD at 1233.370 kb on + strand, within uvrD at 1233.374 kb on + strand, within uvrD at 1233.374 kb on + strand, within uvrD at 1233.374 kb on + strand, within uvrD at 1233.374 kb on + strand, within uvrD at 1233.374 kb on + strand, within uvrD at 1233.375 kb on - strand, within uvrD at 1233.375 kb on - strand, within uvrD at 1233.538 kb on + strand, within uvrD at 1233.539 kb on - strand, within uvrD at 1233.539 kb on - strand, within uvrD at 1233.548 kb on + strand, within uvrD at 1233.652 kb on + strand, within uvrD at 1233.652 kb on + strand, within uvrD at 1233.672 kb on - strand, within uvrD at 1233.711 kb on - strand, within uvrD at 1233.739 kb on + strand, within uvrD at 1233.858 kb on - strand, within uvrD at 1233.858 kb on - strand, within uvrD at 1233.879 kb on + strand, within uvrD at 1233.880 kb on - strand, within uvrD at 1233.971 kb on - strand, within uvrD at 1233.980 kb on - strand, within uvrD at 1233.980 kb on - strand, within uvrD at 1234.025 kb on + strand, within uvrD at 1234.066 kb on + strand, within uvrD at 1234.066 kb on + strand, within uvrD at 1234.066 kb on + strand, within uvrD at 1234.066 kb on + strand, within uvrD at 1234.067 kb on - strand, within uvrD at 1234.130 kb on + strand, within uvrD at 1234.131 kb on - strand, within uvrD at 1234.193 kb on + strand, within uvrD at 1234.193 kb on + strand, within uvrD at 1234.313 kb on + strand at 1234.336 kb on + strand at 1234.387 kb on - strand at 1234.397 kb on + strand at 1234.398 kb on - strand at 1234.398 kb on - strand at 1234.470 kb on - strand at 1234.486 kb on + strand at 1234.486 kb on + strand at 1234.487 kb on - strand at 1234.520 kb on - strand at 1234.520 kb on - strand at 1234.520 kb on - strand at 1234.564 kb on - strand at 1234.564 kb on - strand at 1234.565 kb on + strand at 1234.565 kb on + strand at 1234.565 kb on + strand at 1234.565 kb on + strand at 1234.565 kb on + strand at 1234.565 kb on + strand at 1234.565 kb on + strand at 1234.565 kb on + strand at 1234.566 kb on - strand at 1234.566 kb on - strand at 1234.566 kb on - strand at 1234.566 kb on - strand at 1234.566 kb on - strand at 1234.566 kb on - strand at 1234.566 kb on - strand at 1234.566 kb on - strand at 1234.566 kb on - strand at 1234.566 kb on - strand at 1234.566 kb on - strand at 1234.567 kb on + strand at 1234.567 kb on + strand at 1234.568 kb on - strand at 1234.568 kb on - strand at 1234.568 kb on - strand at 1234.568 kb on - strand at 1234.568 kb on - strand at 1234.568 kb on - strand at 1234.568 kb on - strand at 1234.568 kb on - strand at 1234.585 kb on - strand at 1234.585 kb on - strand at 1234.587 kb on - strand at 1234.587 kb on - strand at 1234.587 kb on - strand at 1234.748 kb on + strand, within yigB at 1234.748 kb on + strand, within yigB at 1234.748 kb on + strand, within yigB at 1234.748 kb on + strand, within yigB at 1234.749 kb on - strand, within yigB at 1234.749 kb on - strand, within yigB at 1234.749 kb on - strand, within yigB at 1234.794 kb on + strand, within yigB at 1234.794 kb on + strand, within yigB at 1234.795 kb on - strand, within yigB at 1234.798 kb on + strand, within yigB at 1234.799 kb on - strand, within yigB at 1234.799 kb on - strand, within yigB at 1234.854 kb on + strand, within yigB at 1234.855 kb on - strand, within yigB at 1234.991 kb on - strand, within yigB at 1235.094 kb on + strand, within yigB at 1235.094 kb on + strand, within yigB at 1235.095 kb on - strand, within yigB at 1235.095 kb on - strand, within yigB at 1235.192 kb on - strand, within yigB at 1235.192 kb on - strand, within yigB at 1235.192 kb on - strand, within yigB at 1235.235 kb on + strand at 1235.242 kb on + strand at 1235.336 kb on + strand at 1235.449 kb on - strand, within xerC at 1235.449 kb on - strand, within xerC at 1235.470 kb on + strand, within xerC at 1235.475 kb on + strand, within xerC
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECOR27 remove 1,231,351 + +0.3 1,231,351 + +0.2 1,231,351 + -0.7 1,231,422 + -0.3 1,231,422 + +0.3 1,231,422 + +0.3 1,231,422 + +1.3 1,231,422 + +0.3 1,231,423 - -0.8 1,231,423 - -0.1 1,231,423 - +0.2 1,231,423 - -0.8 1,231,423 - +1.0 1,231,423 - -0.7 1,231,423 - +0.8 1,231,423 - +0.5 1,231,423 - -0.3 1,231,500 - +0.8 1,231,500 - +2.8 1,231,500 - +1.5 1,231,500 - +0.8 1,231,567 + yigE NOLOHH_06535 0.18 +1.0 1,231,567 + yigE NOLOHH_06535 0.18 +0.8 1,231,567 + yigE NOLOHH_06535 0.18 +0.5 1,231,567 + yigE NOLOHH_06535 0.18 +1.0 1,231,567 + yigE NOLOHH_06535 0.18 -1.7 1,231,568 - yigE NOLOHH_06535 0.19 -0.4 1,231,570 - yigE NOLOHH_06535 0.19 +2.1 1,231,640 + yigE NOLOHH_06535 0.28 +0.2 1,231,640 + yigE NOLOHH_06535 0.28 -0.3 1,231,640 + yigE NOLOHH_06535 0.28 +0.1 1,231,640 + yigE NOLOHH_06535 0.28 -1.2 1,231,640 + yigE NOLOHH_06535 0.28 -0.2 1,231,641 - yigE NOLOHH_06535 0.28 +0.1 1,231,641 - yigE NOLOHH_06535 0.28 -0.2 1,231,705 + yigE NOLOHH_06535 0.36 -0.5 1,231,706 - yigE NOLOHH_06535 0.37 +0.3 1,231,706 - yigE NOLOHH_06535 0.37 -1.4 1,231,706 - yigE NOLOHH_06535 0.37 +0.4 1,231,717 + yigE NOLOHH_06535 0.38 +0.3 1,231,717 + yigE NOLOHH_06535 0.38 -0.0 1,231,717 + yigE NOLOHH_06535 0.38 +1.6 1,231,735 + yigE NOLOHH_06535 0.40 +0.5 1,231,735 + yigE NOLOHH_06535 0.40 -1.1 1,231,736 - yigE NOLOHH_06535 0.41 -0.5 1,231,819 + yigE NOLOHH_06535 0.51 +1.7 1,231,820 - yigE NOLOHH_06535 0.52 +1.0 1,231,834 - yigE NOLOHH_06535 0.53 -1.1 1,231,834 - yigE NOLOHH_06535 0.53 -0.2 1,231,925 + yigE NOLOHH_06535 0.65 +0.2 1,231,926 - yigE NOLOHH_06535 0.65 -0.0 1,231,929 + yigE NOLOHH_06535 0.66 -0.1 1,231,929 + yigE NOLOHH_06535 0.66 +0.3 1,231,929 + yigE NOLOHH_06535 0.66 +0.8 1,231,938 + yigE NOLOHH_06535 0.67 -1.0 1,231,962 + yigE NOLOHH_06535 0.70 +1.0 1,231,989 + yigE NOLOHH_06535 0.74 -0.0 1,231,989 + yigE NOLOHH_06535 0.74 -0.8 1,231,989 + yigE NOLOHH_06535 0.74 +0.8 1,231,989 + yigE NOLOHH_06535 0.74 -0.9 1,231,990 - yigE NOLOHH_06535 0.74 +0.6 1,231,990 - yigE NOLOHH_06535 0.74 -1.8 1,232,053 + yigE NOLOHH_06535 0.82 +0.1 1,232,089 + yigE NOLOHH_06535 0.87 +0.4 1,232,112 + yigE NOLOHH_06535 0.90 -1.2 1,232,112 + yigE NOLOHH_06535 0.90 -0.6 1,232,112 + yigE NOLOHH_06535 0.90 -0.8 1,232,112 + yigE NOLOHH_06535 0.90 -0.0 1,232,112 + yigE NOLOHH_06535 0.90 -2.2 1,232,113 - yigE NOLOHH_06535 0.90 +2.3 1,232,113 - yigE NOLOHH_06535 0.90 -1.9 1,232,113 - yigE NOLOHH_06535 0.90 -1.2 1,232,116 + +0.0 1,232,116 + -0.4 1,232,116 + -1.0 1,232,116 + +0.6 1,232,116 + +0.2 1,232,116 + +0.8 1,232,116 + +0.2 1,232,116 + +0.3 1,232,116 + +0.6 1,232,116 + -1.6 1,232,116 + +0.5 1,232,117 - -0.7 1,232,117 - -0.2 1,232,117 - +0.6 1,232,119 - +0.4 1,232,149 + +0.8 1,232,211 + +0.9 1,232,378 + +0.1 1,232,379 - +0.6 1,232,379 - -0.4 1,232,379 - +1.3 1,232,381 + -0.2 1,232,463 - -1.8 1,232,550 + +1.6 1,232,551 - +0.1 1,232,604 - uvrD NOLOHH_06540 0.12 +0.3 1,232,623 + uvrD NOLOHH_06540 0.13 -0.9 1,232,634 - uvrD NOLOHH_06540 0.14 -0.2 1,232,660 - uvrD NOLOHH_06540 0.15 -0.6 1,232,724 + uvrD NOLOHH_06540 0.18 -0.8 1,232,765 + uvrD NOLOHH_06540 0.20 -1.2 1,232,765 + uvrD NOLOHH_06540 0.20 +0.2 1,232,765 + uvrD NOLOHH_06540 0.20 +0.2 1,232,766 - uvrD NOLOHH_06540 0.20 +0.8 1,232,766 - uvrD NOLOHH_06540 0.20 -1.4 1,232,766 - uvrD NOLOHH_06540 0.20 +0.5 1,232,786 + uvrD NOLOHH_06540 0.21 +0.0 1,232,787 - uvrD NOLOHH_06540 0.21 -0.6 1,232,917 - uvrD NOLOHH_06540 0.27 -0.4 1,232,917 - uvrD NOLOHH_06540 0.27 -2.2 1,232,917 - uvrD NOLOHH_06540 0.27 -1.6 1,232,938 + uvrD NOLOHH_06540 0.28 -2.7 1,232,938 + uvrD NOLOHH_06540 0.28 -2.6 1,233,019 + uvrD NOLOHH_06540 0.32 -2.4 1,233,019 + uvrD NOLOHH_06540 0.32 -1.6 1,233,020 - uvrD NOLOHH_06540 0.32 +1.0 1,233,020 - uvrD NOLOHH_06540 0.32 -0.4 1,233,020 - uvrD NOLOHH_06540 0.32 +0.3 1,233,044 + uvrD NOLOHH_06540 0.33 -0.5 1,233,063 + uvrD NOLOHH_06540 0.34 +0.8 1,233,064 - uvrD NOLOHH_06540 0.34 +0.2 1,233,064 - uvrD NOLOHH_06540 0.34 +0.3 1,233,108 + uvrD NOLOHH_06540 0.36 +0.3 1,233,116 + uvrD NOLOHH_06540 0.36 -0.8 1,233,126 + uvrD NOLOHH_06540 0.36 -1.1 1,233,196 - uvrD NOLOHH_06540 0.40 +0.4 1,233,222 + uvrD NOLOHH_06540 0.41 -1.8 1,233,319 + uvrD NOLOHH_06540 0.45 +3.1 1,233,319 + uvrD NOLOHH_06540 0.45 -0.4 1,233,319 + uvrD NOLOHH_06540 0.45 -0.5 1,233,320 - uvrD NOLOHH_06540 0.45 -2.1 1,233,320 - uvrD NOLOHH_06540 0.45 +0.4 1,233,370 + uvrD NOLOHH_06540 0.48 -1.0 1,233,374 + uvrD NOLOHH_06540 0.48 -1.2 1,233,374 + uvrD NOLOHH_06540 0.48 -1.6 1,233,374 + uvrD NOLOHH_06540 0.48 +0.1 1,233,374 + uvrD NOLOHH_06540 0.48 -0.7 1,233,374 + uvrD NOLOHH_06540 0.48 -1.2 1,233,375 - uvrD NOLOHH_06540 0.48 -0.8 1,233,375 - uvrD NOLOHH_06540 0.48 +0.8 1,233,538 + uvrD NOLOHH_06540 0.56 -0.5 1,233,539 - uvrD NOLOHH_06540 0.56 +0.8 1,233,539 - uvrD NOLOHH_06540 0.56 -1.4 1,233,548 + uvrD NOLOHH_06540 0.56 -2.1 1,233,652 + uvrD NOLOHH_06540 0.61 -1.3 1,233,652 + uvrD NOLOHH_06540 0.61 -1.6 1,233,672 - uvrD NOLOHH_06540 0.62 -0.1 1,233,711 - uvrD NOLOHH_06540 0.64 +0.8 1,233,739 + uvrD NOLOHH_06540 0.65 -0.6 1,233,858 - uvrD NOLOHH_06540 0.70 +0.8 1,233,858 - uvrD NOLOHH_06540 0.70 -0.1 1,233,879 + uvrD NOLOHH_06540 0.71 -0.8 1,233,880 - uvrD NOLOHH_06540 0.71 -2.2 1,233,971 - uvrD NOLOHH_06540 0.76 -0.8 1,233,980 - uvrD NOLOHH_06540 0.76 -0.6 1,233,980 - uvrD NOLOHH_06540 0.76 +0.6 1,234,025 + uvrD NOLOHH_06540 0.78 -2.4 1,234,066 + uvrD NOLOHH_06540 0.80 +1.5 1,234,066 + uvrD NOLOHH_06540 0.80 -2.2 1,234,066 + uvrD NOLOHH_06540 0.80 -2.6 1,234,066 + uvrD NOLOHH_06540 0.80 -0.5 1,234,067 - uvrD NOLOHH_06540 0.80 +1.8 1,234,130 + uvrD NOLOHH_06540 0.83 -1.2 1,234,131 - uvrD NOLOHH_06540 0.83 -0.2 1,234,193 + uvrD NOLOHH_06540 0.86 -2.8 1,234,193 + uvrD NOLOHH_06540 0.86 -1.2 1,234,313 + -1.0 1,234,336 + -1.7 1,234,387 - +1.8 1,234,397 + -0.8 1,234,398 - -0.1 1,234,398 - -1.2 1,234,470 - +0.8 1,234,486 + +1.8 1,234,486 + -1.6 1,234,487 - -1.1 1,234,520 - -0.2 1,234,520 - +0.6 1,234,520 - -0.8 1,234,564 - +0.5 1,234,564 - +0.1 1,234,565 + +0.8 1,234,565 + +3.1 1,234,565 + +0.4 1,234,565 + -0.7 1,234,565 + +0.8 1,234,565 + +0.7 1,234,565 + -0.8 1,234,565 + +0.3 1,234,566 - -1.2 1,234,566 - +0.2 1,234,566 - -0.7 1,234,566 - +0.1 1,234,566 - +0.5 1,234,566 - -0.4 1,234,566 - +0.3 1,234,566 - +0.3 1,234,566 - +0.5 1,234,566 - -0.2 1,234,566 - -0.3 1,234,567 + -0.3 1,234,567 + +1.2 1,234,568 - +1.6 1,234,568 - -1.3 1,234,568 - -0.9 1,234,568 - -1.2 1,234,568 - -1.1 1,234,568 - +0.8 1,234,568 - -0.9 1,234,568 - -0.2 1,234,585 - +0.4 1,234,585 - -1.5 1,234,587 - +0.2 1,234,587 - -0.2 1,234,587 - +0.8 1,234,748 + yigB NOLOHH_06545 0.23 -0.8 1,234,748 + yigB NOLOHH_06545 0.23 +0.2 1,234,748 + yigB NOLOHH_06545 0.23 -0.2 1,234,748 + yigB NOLOHH_06545 0.23 -0.6 1,234,749 - yigB NOLOHH_06545 0.23 +0.0 1,234,749 - yigB NOLOHH_06545 0.23 +0.5 1,234,749 - yigB NOLOHH_06545 0.23 -0.2 1,234,794 + yigB NOLOHH_06545 0.29 -1.8 1,234,794 + yigB NOLOHH_06545 0.29 +0.3 1,234,795 - yigB NOLOHH_06545 0.30 -0.6 1,234,798 + yigB NOLOHH_06545 0.30 +0.6 1,234,799 - yigB NOLOHH_06545 0.30 -0.4 1,234,799 - yigB NOLOHH_06545 0.30 -0.7 1,234,854 + yigB NOLOHH_06545 0.38 +0.3 1,234,855 - yigB NOLOHH_06545 0.38 -0.9 1,234,991 - yigB NOLOHH_06545 0.57 -0.5 1,235,094 + yigB NOLOHH_06545 0.71 -0.2 1,235,094 + yigB NOLOHH_06545 0.71 +1.6 1,235,095 - yigB NOLOHH_06545 0.71 +0.2 1,235,095 - yigB NOLOHH_06545 0.71 +1.0 1,235,192 - yigB NOLOHH_06545 0.85 +1.3 1,235,192 - yigB NOLOHH_06545 0.85 +0.1 1,235,192 - yigB NOLOHH_06545 0.85 -0.2 1,235,235 + -1.3 1,235,242 + -1.1 1,235,336 + +0.8 1,235,449 - xerC NOLOHH_06550 0.17 -0.8 1,235,449 - xerC NOLOHH_06550 0.17 +0.8 1,235,470 + xerC NOLOHH_06550 0.19 -0.8 1,235,475 + xerC NOLOHH_06550 0.20 +0.8
Or see this region's nucleotide sequence