Experiment: Control_ECOR27
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fadA and fre are separated by 191 nucleotides fre and ubiD are separated by 45 nucleotides
NOLOHH_06380: fadA - acetyl-CoA C-acyltransferase FadA, at 1,202,247 to 1,203,410
fadA
NOLOHH_06385: fre - NAD(P)H-flavin reductase, at 1,203,602 to 1,204,303
fre
NOLOHH_06390: ubiD - 4-hydroxy-3-polyprenylbenzoate decarboxylase, at 1,204,349 to 1,205,842
ubiD
Position (kb)
1203
1204
1205 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1202.606 kb on + strand, within fadA at 1202.607 kb on - strand, within fadA at 1202.693 kb on - strand, within fadA at 1202.715 kb on - strand, within fadA at 1202.801 kb on + strand, within fadA at 1202.858 kb on + strand, within fadA at 1202.859 kb on - strand, within fadA at 1202.862 kb on + strand, within fadA at 1202.863 kb on - strand, within fadA at 1202.863 kb on - strand, within fadA at 1202.932 kb on + strand, within fadA at 1203.023 kb on - strand, within fadA at 1203.023 kb on - strand, within fadA at 1203.023 kb on - strand, within fadA at 1203.023 kb on - strand, within fadA at 1203.029 kb on + strand, within fadA at 1203.408 kb on + strand at 1203.468 kb on - strand at 1203.468 kb on - strand at 1203.468 kb on - strand at 1203.477 kb on - strand at 1203.477 kb on - strand at 1203.529 kb on + strand at 1203.529 kb on + strand at 1203.529 kb on + strand at 1203.530 kb on - strand at 1203.530 kb on - strand at 1203.530 kb on - strand at 1203.530 kb on - strand at 1203.535 kb on + strand at 1203.535 kb on + strand at 1203.536 kb on - strand at 1203.536 kb on - strand at 1203.536 kb on - strand at 1203.558 kb on - strand at 1203.598 kb on + strand at 1203.707 kb on - strand, within fre at 1203.708 kb on + strand, within fre at 1203.708 kb on + strand, within fre at 1203.708 kb on + strand, within fre at 1203.708 kb on + strand, within fre at 1203.708 kb on + strand, within fre at 1203.708 kb on + strand, within fre at 1203.708 kb on + strand, within fre at 1203.708 kb on + strand, within fre at 1203.709 kb on - strand, within fre at 1203.709 kb on - strand, within fre at 1203.709 kb on - strand, within fre at 1203.709 kb on - strand, within fre at 1203.709 kb on - strand, within fre at 1203.709 kb on - strand, within fre at 1203.709 kb on - strand, within fre at 1203.709 kb on - strand, within fre at 1203.712 kb on + strand, within fre at 1203.712 kb on + strand, within fre at 1203.712 kb on + strand, within fre at 1203.713 kb on - strand, within fre at 1203.713 kb on - strand, within fre at 1203.713 kb on - strand, within fre at 1203.713 kb on - strand, within fre at 1203.713 kb on - strand, within fre at 1203.713 kb on - strand, within fre at 1203.730 kb on + strand, within fre at 1203.731 kb on - strand, within fre at 1203.864 kb on + strand, within fre at 1203.864 kb on + strand, within fre at 1203.865 kb on - strand, within fre at 1203.865 kb on - strand, within fre at 1203.865 kb on - strand, within fre at 1203.894 kb on + strand, within fre at 1203.905 kb on - strand, within fre at 1203.954 kb on + strand, within fre at 1203.955 kb on - strand, within fre at 1204.034 kb on - strand, within fre at 1204.111 kb on + strand, within fre at 1204.111 kb on + strand, within fre at 1204.188 kb on - strand, within fre at 1204.197 kb on + strand, within fre at 1204.250 kb on + strand at 1204.250 kb on + strand at 1204.250 kb on + strand at 1204.250 kb on + strand at 1204.250 kb on + strand at 1204.250 kb on + strand at 1204.250 kb on + strand at 1204.250 kb on + strand at 1204.251 kb on - strand at 1204.251 kb on - strand at 1204.251 kb on - strand at 1204.251 kb on - strand at 1204.251 kb on - strand at 1204.251 kb on - strand at 1204.251 kb on - strand at 1204.251 kb on - strand at 1204.264 kb on + strand at 1204.265 kb on - strand at 1204.265 kb on - strand at 1204.285 kb on + strand at 1204.292 kb on + strand at 1204.292 kb on + strand at 1204.293 kb on - strand at 1204.293 kb on - strand at 1204.325 kb on + strand at 1204.326 kb on - strand at 1204.326 kb on - strand at 1204.326 kb on - strand at 1204.330 kb on - strand at 1204.330 kb on - strand at 1204.360 kb on + strand at 1204.360 kb on + strand at 1204.360 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECOR27 remove 1,202,606 + fadA NOLOHH_06380 0.31 +0.1 1,202,607 - fadA NOLOHH_06380 0.31 +0.2 1,202,693 - fadA NOLOHH_06380 0.38 +1.1 1,202,715 - fadA NOLOHH_06380 0.40 -0.3 1,202,801 + fadA NOLOHH_06380 0.48 -0.2 1,202,858 + fadA NOLOHH_06380 0.52 -1.7 1,202,859 - fadA NOLOHH_06380 0.53 -0.8 1,202,862 + fadA NOLOHH_06380 0.53 -0.2 1,202,863 - fadA NOLOHH_06380 0.53 +0.2 1,202,863 - fadA NOLOHH_06380 0.53 -2.0 1,202,932 + fadA NOLOHH_06380 0.59 -0.4 1,203,023 - fadA NOLOHH_06380 0.67 -0.7 1,203,023 - fadA NOLOHH_06380 0.67 -0.8 1,203,023 - fadA NOLOHH_06380 0.67 -0.0 1,203,023 - fadA NOLOHH_06380 0.67 +0.3 1,203,029 + fadA NOLOHH_06380 0.67 -0.1 1,203,408 + -0.5 1,203,468 - -0.2 1,203,468 - -1.2 1,203,468 - -0.1 1,203,477 - -0.6 1,203,477 - +0.8 1,203,529 + +2.1 1,203,529 + -0.8 1,203,529 + -0.2 1,203,530 - +0.2 1,203,530 - +0.5 1,203,530 - +0.4 1,203,530 - +0.9 1,203,535 + -0.4 1,203,535 + -1.4 1,203,536 - -0.1 1,203,536 - -0.2 1,203,536 - -0.9 1,203,558 - -0.2 1,203,598 + +0.4 1,203,707 - fre NOLOHH_06385 0.15 -1.1 1,203,708 + fre NOLOHH_06385 0.15 -1.8 1,203,708 + fre NOLOHH_06385 0.15 -0.8 1,203,708 + fre NOLOHH_06385 0.15 +0.2 1,203,708 + fre NOLOHH_06385 0.15 -0.0 1,203,708 + fre NOLOHH_06385 0.15 -2.4 1,203,708 + fre NOLOHH_06385 0.15 -1.4 1,203,708 + fre NOLOHH_06385 0.15 -0.8 1,203,708 + fre NOLOHH_06385 0.15 -1.0 1,203,709 - fre NOLOHH_06385 0.15 -1.2 1,203,709 - fre NOLOHH_06385 0.15 -0.2 1,203,709 - fre NOLOHH_06385 0.15 +0.2 1,203,709 - fre NOLOHH_06385 0.15 -0.1 1,203,709 - fre NOLOHH_06385 0.15 +0.3 1,203,709 - fre NOLOHH_06385 0.15 -2.6 1,203,709 - fre NOLOHH_06385 0.15 -0.5 1,203,709 - fre NOLOHH_06385 0.15 -0.2 1,203,712 + fre NOLOHH_06385 0.16 +0.8 1,203,712 + fre NOLOHH_06385 0.16 -0.2 1,203,712 + fre NOLOHH_06385 0.16 -1.3 1,203,713 - fre NOLOHH_06385 0.16 -0.2 1,203,713 - fre NOLOHH_06385 0.16 -0.6 1,203,713 - fre NOLOHH_06385 0.16 -1.1 1,203,713 - fre NOLOHH_06385 0.16 -2.1 1,203,713 - fre NOLOHH_06385 0.16 +2.1 1,203,713 - fre NOLOHH_06385 0.16 -0.1 1,203,730 + fre NOLOHH_06385 0.18 -2.4 1,203,731 - fre NOLOHH_06385 0.18 +0.2 1,203,864 + fre NOLOHH_06385 0.37 -0.1 1,203,864 + fre NOLOHH_06385 0.37 +0.8 1,203,865 - fre NOLOHH_06385 0.37 -0.8 1,203,865 - fre NOLOHH_06385 0.37 -0.2 1,203,865 - fre NOLOHH_06385 0.37 +0.2 1,203,894 + fre NOLOHH_06385 0.42 -0.5 1,203,905 - fre NOLOHH_06385 0.43 -1.6 1,203,954 + fre NOLOHH_06385 0.50 -1.2 1,203,955 - fre NOLOHH_06385 0.50 +0.0 1,204,034 - fre NOLOHH_06385 0.62 -1.6 1,204,111 + fre NOLOHH_06385 0.73 -2.4 1,204,111 + fre NOLOHH_06385 0.73 -0.6 1,204,188 - fre NOLOHH_06385 0.83 +1.2 1,204,197 + fre NOLOHH_06385 0.85 -0.8 1,204,250 + -1.8 1,204,250 + -0.7 1,204,250 + -0.8 1,204,250 + -0.6 1,204,250 + -0.2 1,204,250 + -1.8 1,204,250 + +0.0 1,204,250 + -0.8 1,204,251 - +1.1 1,204,251 - +0.8 1,204,251 - -0.8 1,204,251 - -2.2 1,204,251 - -0.2 1,204,251 - -1.1 1,204,251 - +0.8 1,204,251 - -2.8 1,204,264 + -2.1 1,204,265 - -0.2 1,204,265 - -1.1 1,204,285 + -0.6 1,204,292 + +0.8 1,204,292 + -0.8 1,204,293 - -0.6 1,204,293 - -0.2 1,204,325 + +0.0 1,204,326 - +0.0 1,204,326 - -0.8 1,204,326 - -0.2 1,204,330 - -1.2 1,204,330 - +0.2 1,204,360 + -1.8 1,204,360 + -1.1 1,204,360 + -0.1
Or see this region's nucleotide sequence