Strain Fitness in Escherichia coli ECOR27 around NOLOHH_06385

Experiment: Control_ECOR27

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfadA and fre are separated by 191 nucleotidesfre and ubiD are separated by 45 nucleotides NOLOHH_06380: fadA - acetyl-CoA C-acyltransferase FadA, at 1,202,247 to 1,203,410 fadA NOLOHH_06385: fre - NAD(P)H-flavin reductase, at 1,203,602 to 1,204,303 fre NOLOHH_06390: ubiD - 4-hydroxy-3-polyprenylbenzoate decarboxylase, at 1,204,349 to 1,205,842 ubiD Position (kb) 1203 1204 1205Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1202.606 kb on + strand, within fadAat 1202.607 kb on - strand, within fadAat 1202.693 kb on - strand, within fadAat 1202.715 kb on - strand, within fadAat 1202.801 kb on + strand, within fadAat 1202.858 kb on + strand, within fadAat 1202.859 kb on - strand, within fadAat 1202.862 kb on + strand, within fadAat 1202.863 kb on - strand, within fadAat 1202.863 kb on - strand, within fadAat 1202.932 kb on + strand, within fadAat 1203.023 kb on - strand, within fadAat 1203.023 kb on - strand, within fadAat 1203.023 kb on - strand, within fadAat 1203.023 kb on - strand, within fadAat 1203.029 kb on + strand, within fadAat 1203.408 kb on + strandat 1203.468 kb on - strandat 1203.468 kb on - strandat 1203.468 kb on - strandat 1203.477 kb on - strandat 1203.477 kb on - strandat 1203.529 kb on + strandat 1203.529 kb on + strandat 1203.529 kb on + strandat 1203.530 kb on - strandat 1203.530 kb on - strandat 1203.530 kb on - strandat 1203.530 kb on - strandat 1203.535 kb on + strandat 1203.535 kb on + strandat 1203.536 kb on - strandat 1203.536 kb on - strandat 1203.536 kb on - strandat 1203.558 kb on - strandat 1203.598 kb on + strandat 1203.707 kb on - strand, within freat 1203.708 kb on + strand, within freat 1203.708 kb on + strand, within freat 1203.708 kb on + strand, within freat 1203.708 kb on + strand, within freat 1203.708 kb on + strand, within freat 1203.708 kb on + strand, within freat 1203.708 kb on + strand, within freat 1203.708 kb on + strand, within freat 1203.709 kb on - strand, within freat 1203.709 kb on - strand, within freat 1203.709 kb on - strand, within freat 1203.709 kb on - strand, within freat 1203.709 kb on - strand, within freat 1203.709 kb on - strand, within freat 1203.709 kb on - strand, within freat 1203.709 kb on - strand, within freat 1203.712 kb on + strand, within freat 1203.712 kb on + strand, within freat 1203.712 kb on + strand, within freat 1203.713 kb on - strand, within freat 1203.713 kb on - strand, within freat 1203.713 kb on - strand, within freat 1203.713 kb on - strand, within freat 1203.713 kb on - strand, within freat 1203.713 kb on - strand, within freat 1203.730 kb on + strand, within freat 1203.731 kb on - strand, within freat 1203.864 kb on + strand, within freat 1203.864 kb on + strand, within freat 1203.865 kb on - strand, within freat 1203.865 kb on - strand, within freat 1203.865 kb on - strand, within freat 1203.894 kb on + strand, within freat 1203.905 kb on - strand, within freat 1203.954 kb on + strand, within freat 1203.955 kb on - strand, within freat 1204.034 kb on - strand, within freat 1204.111 kb on + strand, within freat 1204.111 kb on + strand, within freat 1204.188 kb on - strand, within freat 1204.197 kb on + strand, within freat 1204.250 kb on + strandat 1204.250 kb on + strandat 1204.250 kb on + strandat 1204.250 kb on + strandat 1204.250 kb on + strandat 1204.250 kb on + strandat 1204.250 kb on + strandat 1204.250 kb on + strandat 1204.251 kb on - strandat 1204.251 kb on - strandat 1204.251 kb on - strandat 1204.251 kb on - strandat 1204.251 kb on - strandat 1204.251 kb on - strandat 1204.251 kb on - strandat 1204.251 kb on - strandat 1204.264 kb on + strandat 1204.265 kb on - strandat 1204.265 kb on - strandat 1204.285 kb on + strandat 1204.292 kb on + strandat 1204.292 kb on + strandat 1204.293 kb on - strandat 1204.293 kb on - strandat 1204.325 kb on + strandat 1204.326 kb on - strandat 1204.326 kb on - strandat 1204.326 kb on - strandat 1204.330 kb on - strandat 1204.330 kb on - strandat 1204.360 kb on + strandat 1204.360 kb on + strandat 1204.360 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECOR27
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1,202,606 + fadA NOLOHH_06380 0.31 +0.1
1,202,607 - fadA NOLOHH_06380 0.31 +0.2
1,202,693 - fadA NOLOHH_06380 0.38 +1.1
1,202,715 - fadA NOLOHH_06380 0.40 -0.3
1,202,801 + fadA NOLOHH_06380 0.48 -0.2
1,202,858 + fadA NOLOHH_06380 0.52 -1.7
1,202,859 - fadA NOLOHH_06380 0.53 -0.8
1,202,862 + fadA NOLOHH_06380 0.53 -0.2
1,202,863 - fadA NOLOHH_06380 0.53 +0.2
1,202,863 - fadA NOLOHH_06380 0.53 -2.0
1,202,932 + fadA NOLOHH_06380 0.59 -0.4
1,203,023 - fadA NOLOHH_06380 0.67 -0.7
1,203,023 - fadA NOLOHH_06380 0.67 -0.8
1,203,023 - fadA NOLOHH_06380 0.67 -0.0
1,203,023 - fadA NOLOHH_06380 0.67 +0.3
1,203,029 + fadA NOLOHH_06380 0.67 -0.1
1,203,408 + -0.5
1,203,468 - -0.2
1,203,468 - -1.2
1,203,468 - -0.1
1,203,477 - -0.6
1,203,477 - +0.8
1,203,529 + +2.1
1,203,529 + -0.8
1,203,529 + -0.2
1,203,530 - +0.2
1,203,530 - +0.5
1,203,530 - +0.4
1,203,530 - +0.9
1,203,535 + -0.4
1,203,535 + -1.4
1,203,536 - -0.1
1,203,536 - -0.2
1,203,536 - -0.9
1,203,558 - -0.2
1,203,598 + +0.4
1,203,707 - fre NOLOHH_06385 0.15 -1.1
1,203,708 + fre NOLOHH_06385 0.15 -1.8
1,203,708 + fre NOLOHH_06385 0.15 -0.8
1,203,708 + fre NOLOHH_06385 0.15 +0.2
1,203,708 + fre NOLOHH_06385 0.15 -0.0
1,203,708 + fre NOLOHH_06385 0.15 -2.4
1,203,708 + fre NOLOHH_06385 0.15 -1.4
1,203,708 + fre NOLOHH_06385 0.15 -0.8
1,203,708 + fre NOLOHH_06385 0.15 -1.0
1,203,709 - fre NOLOHH_06385 0.15 -1.2
1,203,709 - fre NOLOHH_06385 0.15 -0.2
1,203,709 - fre NOLOHH_06385 0.15 +0.2
1,203,709 - fre NOLOHH_06385 0.15 -0.1
1,203,709 - fre NOLOHH_06385 0.15 +0.3
1,203,709 - fre NOLOHH_06385 0.15 -2.6
1,203,709 - fre NOLOHH_06385 0.15 -0.5
1,203,709 - fre NOLOHH_06385 0.15 -0.2
1,203,712 + fre NOLOHH_06385 0.16 +0.8
1,203,712 + fre NOLOHH_06385 0.16 -0.2
1,203,712 + fre NOLOHH_06385 0.16 -1.3
1,203,713 - fre NOLOHH_06385 0.16 -0.2
1,203,713 - fre NOLOHH_06385 0.16 -0.6
1,203,713 - fre NOLOHH_06385 0.16 -1.1
1,203,713 - fre NOLOHH_06385 0.16 -2.1
1,203,713 - fre NOLOHH_06385 0.16 +2.1
1,203,713 - fre NOLOHH_06385 0.16 -0.1
1,203,730 + fre NOLOHH_06385 0.18 -2.4
1,203,731 - fre NOLOHH_06385 0.18 +0.2
1,203,864 + fre NOLOHH_06385 0.37 -0.1
1,203,864 + fre NOLOHH_06385 0.37 +0.8
1,203,865 - fre NOLOHH_06385 0.37 -0.8
1,203,865 - fre NOLOHH_06385 0.37 -0.2
1,203,865 - fre NOLOHH_06385 0.37 +0.2
1,203,894 + fre NOLOHH_06385 0.42 -0.5
1,203,905 - fre NOLOHH_06385 0.43 -1.6
1,203,954 + fre NOLOHH_06385 0.50 -1.2
1,203,955 - fre NOLOHH_06385 0.50 +0.0
1,204,034 - fre NOLOHH_06385 0.62 -1.6
1,204,111 + fre NOLOHH_06385 0.73 -2.4
1,204,111 + fre NOLOHH_06385 0.73 -0.6
1,204,188 - fre NOLOHH_06385 0.83 +1.2
1,204,197 + fre NOLOHH_06385 0.85 -0.8
1,204,250 + -1.8
1,204,250 + -0.7
1,204,250 + -0.8
1,204,250 + -0.6
1,204,250 + -0.2
1,204,250 + -1.8
1,204,250 + +0.0
1,204,250 + -0.8
1,204,251 - +1.1
1,204,251 - +0.8
1,204,251 - -0.8
1,204,251 - -2.2
1,204,251 - -0.2
1,204,251 - -1.1
1,204,251 - +0.8
1,204,251 - -2.8
1,204,264 + -2.1
1,204,265 - -0.2
1,204,265 - -1.1
1,204,285 + -0.6
1,204,292 + +0.8
1,204,292 + -0.8
1,204,293 - -0.6
1,204,293 - -0.2
1,204,325 + +0.0
1,204,326 - +0.0
1,204,326 - -0.8
1,204,326 - -0.2
1,204,330 - -1.2
1,204,330 - +0.2
1,204,360 + -1.8
1,204,360 + -1.1
1,204,360 + -0.1

Or see this region's nucleotide sequence