Experiment: Control_ECOR27
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt osmY and prfC are separated by 392 nucleotides prfC and yjjG are separated by 63 nucleotides yjjG and rimI are separated by 14 nucleotides
NOLOHH_03595: osmY - molecular chaperone OsmY, at 639,135 to 639,740
osmY
NOLOHH_03600: prfC - peptide chain release factor 3, at 640,133 to 641,749
prfC
NOLOHH_03605: yjjG - pyrimidine 5'-nucleotidase, at 641,813 to 642,490
yjjG
NOLOHH_03610: rimI - ribosomal protein S18-alanine N-acetyltransferase, at 642,505 to 642,951
rimI
Position (kb) 640
641
642 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 639.137 kb on - strand at 639.137 kb on - strand at 639.140 kb on + strand at 639.191 kb on + strand at 639.192 kb on - strand at 639.510 kb on - strand, within osmY at 639.510 kb on - strand, within osmY at 639.603 kb on - strand, within osmY at 639.638 kb on + strand, within osmY at 639.696 kb on + strand at 639.697 kb on - strand at 639.734 kb on + strand at 639.747 kb on - strand at 639.754 kb on + strand at 639.754 kb on + strand at 639.755 kb on - strand at 639.767 kb on - strand at 639.824 kb on - strand at 639.868 kb on - strand at 639.877 kb on + strand at 639.899 kb on - strand at 639.939 kb on - strand at 639.943 kb on - strand at 639.960 kb on + strand at 640.081 kb on - strand at 640.207 kb on + strand at 640.215 kb on + strand at 640.215 kb on + strand at 640.215 kb on + strand at 640.216 kb on - strand at 640.216 kb on - strand at 640.216 kb on - strand at 640.216 kb on - strand at 640.216 kb on - strand at 640.216 kb on - strand at 640.216 kb on - strand at 640.261 kb on + strand at 640.336 kb on - strand, within prfC at 640.336 kb on - strand, within prfC at 640.338 kb on - strand, within prfC at 640.353 kb on + strand, within prfC at 640.354 kb on - strand, within prfC at 640.373 kb on + strand, within prfC at 640.472 kb on + strand, within prfC at 640.472 kb on + strand, within prfC at 640.473 kb on - strand, within prfC at 640.607 kb on - strand, within prfC at 640.717 kb on + strand, within prfC at 640.750 kb on - strand, within prfC at 640.753 kb on + strand, within prfC at 640.763 kb on + strand, within prfC at 640.772 kb on - strand, within prfC at 640.772 kb on - strand, within prfC at 640.922 kb on - strand, within prfC at 640.922 kb on - strand, within prfC at 641.042 kb on + strand, within prfC at 641.043 kb on - strand, within prfC at 641.043 kb on - strand, within prfC at 641.043 kb on - strand, within prfC at 641.102 kb on - strand, within prfC at 641.151 kb on + strand, within prfC at 641.151 kb on + strand, within prfC at 641.152 kb on - strand, within prfC at 641.152 kb on - strand, within prfC at 641.152 kb on - strand, within prfC at 641.152 kb on - strand, within prfC at 641.165 kb on - strand, within prfC at 641.165 kb on - strand, within prfC at 641.166 kb on + strand, within prfC at 641.166 kb on + strand, within prfC at 641.185 kb on + strand, within prfC at 641.281 kb on + strand, within prfC at 641.303 kb on - strand, within prfC at 641.424 kb on + strand, within prfC at 641.424 kb on + strand, within prfC at 641.425 kb on - strand, within prfC at 641.425 kb on - strand, within prfC at 641.428 kb on + strand, within prfC at 641.428 kb on + strand, within prfC at 641.429 kb on - strand, within prfC at 641.429 kb on - strand, within prfC at 641.488 kb on - strand, within prfC at 641.509 kb on + strand, within prfC at 641.509 kb on + strand, within prfC at 641.509 kb on + strand, within prfC at 641.509 kb on + strand, within prfC at 641.510 kb on - strand, within prfC at 641.510 kb on - strand, within prfC at 641.510 kb on - strand, within prfC at 641.512 kb on + strand, within prfC at 641.512 kb on + strand, within prfC at 641.512 kb on + strand, within prfC at 641.513 kb on - strand, within prfC at 641.557 kb on + strand, within prfC at 641.585 kb on + strand, within prfC at 641.585 kb on + strand, within prfC at 641.591 kb on - strand at 641.641 kb on + strand at 641.641 kb on + strand at 641.641 kb on + strand at 641.669 kb on - strand at 641.707 kb on - strand at 641.707 kb on - strand at 641.722 kb on + strand at 641.722 kb on + strand at 641.723 kb on - strand at 641.723 kb on - strand at 641.741 kb on - strand at 642.084 kb on + strand, within yjjG at 642.178 kb on + strand, within yjjG at 642.229 kb on + strand, within yjjG at 642.233 kb on - strand, within yjjG at 642.233 kb on - strand, within yjjG at 642.233 kb on - strand, within yjjG at 642.445 kb on + strand at 642.445 kb on + strand at 642.506 kb on + strand at 642.506 kb on + strand at 642.507 kb on - strand at 642.507 kb on - strand at 642.507 kb on - strand at 642.507 kb on - strand at 642.510 kb on + strand at 642.510 kb on + strand at 642.510 kb on + strand at 642.510 kb on + strand at 642.511 kb on - strand at 642.566 kb on + strand, within rimI at 642.566 kb on + strand, within rimI at 642.567 kb on - strand, within rimI at 642.567 kb on - strand, within rimI at 642.599 kb on - strand, within rimI at 642.652 kb on + strand, within rimI at 642.653 kb on - strand, within rimI at 642.653 kb on - strand, within rimI at 642.728 kb on + strand, within rimI at 642.747 kb on + strand, within rimI at 642.747 kb on + strand, within rimI at 642.748 kb on - strand, within rimI
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECOR27 remove 639,137 - -0.7 639,137 - +0.5 639,140 + +0.5 639,191 + -0.3 639,192 - -0.5 639,510 - osmY NOLOHH_03595 0.62 +0.1 639,510 - osmY NOLOHH_03595 0.62 -1.0 639,603 - osmY NOLOHH_03595 0.77 +0.5 639,638 + osmY NOLOHH_03595 0.83 +0.0 639,696 + +0.4 639,697 - -0.6 639,734 + +0.1 639,747 - -0.9 639,754 + +1.5 639,754 + +0.7 639,755 - -1.1 639,767 - -1.9 639,824 - -2.2 639,868 - +1.2 639,877 + +0.1 639,899 - -0.2 639,939 - -1.9 639,943 - -0.3 639,960 + -0.1 640,081 - -0.1 640,207 + +1.2 640,215 + -0.3 640,215 + -2.4 640,215 + -0.3 640,216 - -1.7 640,216 - +3.0 640,216 - -1.9 640,216 - -0.9 640,216 - -0.7 640,216 - -2.8 640,216 - +0.7 640,261 + +0.1 640,336 - prfC NOLOHH_03600 0.13 -0.6 640,336 - prfC NOLOHH_03600 0.13 -0.8 640,338 - prfC NOLOHH_03600 0.13 -1.3 640,353 + prfC NOLOHH_03600 0.14 +0.7 640,354 - prfC NOLOHH_03600 0.14 -0.7 640,373 + prfC NOLOHH_03600 0.15 -0.9 640,472 + prfC NOLOHH_03600 0.21 +0.7 640,472 + prfC NOLOHH_03600 0.21 -2.0 640,473 - prfC NOLOHH_03600 0.21 -1.7 640,607 - prfC NOLOHH_03600 0.29 +1.2 640,717 + prfC NOLOHH_03600 0.36 -0.3 640,750 - prfC NOLOHH_03600 0.38 -1.9 640,753 + prfC NOLOHH_03600 0.38 -1.9 640,763 + prfC NOLOHH_03600 0.39 +2.2 640,772 - prfC NOLOHH_03600 0.40 +0.7 640,772 - prfC NOLOHH_03600 0.40 -1.0 640,922 - prfC NOLOHH_03600 0.49 +0.2 640,922 - prfC NOLOHH_03600 0.49 -1.3 641,042 + prfC NOLOHH_03600 0.56 -0.8 641,043 - prfC NOLOHH_03600 0.56 -0.8 641,043 - prfC NOLOHH_03600 0.56 -0.8 641,043 - prfC NOLOHH_03600 0.56 -0.9 641,102 - prfC NOLOHH_03600 0.60 +0.1 641,151 + prfC NOLOHH_03600 0.63 -1.1 641,151 + prfC NOLOHH_03600 0.63 -0.9 641,152 - prfC NOLOHH_03600 0.63 -1.3 641,152 - prfC NOLOHH_03600 0.63 -1.1 641,152 - prfC NOLOHH_03600 0.63 +1.0 641,152 - prfC NOLOHH_03600 0.63 -0.9 641,165 - prfC NOLOHH_03600 0.64 +0.7 641,165 - prfC NOLOHH_03600 0.64 -0.3 641,166 + prfC NOLOHH_03600 0.64 -0.3 641,166 + prfC NOLOHH_03600 0.64 -1.7 641,185 + prfC NOLOHH_03600 0.65 -0.6 641,281 + prfC NOLOHH_03600 0.71 -0.9 641,303 - prfC NOLOHH_03600 0.72 -0.1 641,424 + prfC NOLOHH_03600 0.80 +0.7 641,424 + prfC NOLOHH_03600 0.80 -0.9 641,425 - prfC NOLOHH_03600 0.80 +0.3 641,425 - prfC NOLOHH_03600 0.80 -0.3 641,428 + prfC NOLOHH_03600 0.80 +1.7 641,428 + prfC NOLOHH_03600 0.80 +0.7 641,429 - prfC NOLOHH_03600 0.80 -0.3 641,429 - prfC NOLOHH_03600 0.80 -0.9 641,488 - prfC NOLOHH_03600 0.84 +0.7 641,509 + prfC NOLOHH_03600 0.85 +0.7 641,509 + prfC NOLOHH_03600 0.85 -2.2 641,509 + prfC NOLOHH_03600 0.85 -0.8 641,509 + prfC NOLOHH_03600 0.85 -0.6 641,510 - prfC NOLOHH_03600 0.85 -0.7 641,510 - prfC NOLOHH_03600 0.85 -1.3 641,510 - prfC NOLOHH_03600 0.85 -0.5 641,512 + prfC NOLOHH_03600 0.85 -0.9 641,512 + prfC NOLOHH_03600 0.85 -1.6 641,512 + prfC NOLOHH_03600 0.85 -0.9 641,513 - prfC NOLOHH_03600 0.85 -0.3 641,557 + prfC NOLOHH_03600 0.88 -0.8 641,585 + prfC NOLOHH_03600 0.90 +0.7 641,585 + prfC NOLOHH_03600 0.90 -1.3 641,591 - -0.3 641,641 + -0.9 641,641 + -0.9 641,641 + -2.8 641,669 - -3.0 641,707 - -1.7 641,707 - +0.3 641,722 + -2.3 641,722 + +0.3 641,723 - -1.3 641,723 - +0.7 641,741 - -0.1 642,084 + yjjG NOLOHH_03605 0.40 +0.4 642,178 + yjjG NOLOHH_03605 0.54 -0.8 642,229 + yjjG NOLOHH_03605 0.61 +0.4 642,233 - yjjG NOLOHH_03605 0.62 -0.4 642,233 - yjjG NOLOHH_03605 0.62 +1.1 642,233 - yjjG NOLOHH_03605 0.62 +0.7 642,445 + +2.2 642,445 + +1.1 642,506 + +1.3 642,506 + -0.2 642,507 - +0.5 642,507 - +0.1 642,507 - -0.1 642,507 - +2.2 642,510 + -0.4 642,510 + -0.1 642,510 + -0.8 642,510 + -0.3 642,511 - -0.3 642,566 + rimI NOLOHH_03610 0.14 +1.3 642,566 + rimI NOLOHH_03610 0.14 +1.3 642,567 - rimI NOLOHH_03610 0.14 -0.6 642,567 - rimI NOLOHH_03610 0.14 -0.1 642,599 - rimI NOLOHH_03610 0.21 +0.7 642,652 + rimI NOLOHH_03610 0.33 +0.9 642,653 - rimI NOLOHH_03610 0.33 -0.1 642,653 - rimI NOLOHH_03610 0.33 +1.1 642,728 + rimI NOLOHH_03610 0.50 +0.3 642,747 + rimI NOLOHH_03610 0.54 +1.1 642,747 + rimI NOLOHH_03610 0.54 +0.5 642,748 - rimI NOLOHH_03610 0.54 +1.0
Or see this region's nucleotide sequence