Strain Fitness in Escherichia coli ECOR27 around NOLOHH_03215

Experiment: Control_ECOR27

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyaaU and fixX are separated by 58 nucleotidesfixX and fixX overlap by 4 nucleotides NOLOHH_03210: yaaU - Putative metabolite transport protein YaaU, at 560,585 to 561,916 yaaU NOLOHH_03215: fixX - ferredoxin-like protein FixX, at 561,975 to 562,262 fixX NOLOHH_03220: fixX - ferredoxin-like protein FixX, at 562,259 to 563,545 fixX Position (kb) 561 562 563Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 561.029 kb on - strand, within yaaUat 561.040 kb on + strand, within yaaUat 561.041 kb on - strand, within yaaUat 561.129 kb on + strand, within yaaUat 561.129 kb on + strand, within yaaUat 561.129 kb on + strand, within yaaUat 561.130 kb on - strand, within yaaUat 561.206 kb on - strand, within yaaUat 561.318 kb on - strand, within yaaUat 561.420 kb on + strand, within yaaUat 561.421 kb on - strand, within yaaUat 561.462 kb on + strand, within yaaUat 561.462 kb on + strand, within yaaUat 561.463 kb on - strand, within yaaUat 561.463 kb on - strand, within yaaUat 561.463 kb on - strand, within yaaUat 561.463 kb on - strand, within yaaUat 561.463 kb on - strand, within yaaUat 561.571 kb on + strand, within yaaUat 561.575 kb on + strand, within yaaUat 561.691 kb on + strand, within yaaUat 561.692 kb on - strand, within yaaUat 561.693 kb on + strand, within yaaUat 561.818 kb on + strandat 561.818 kb on + strandat 561.818 kb on + strandat 561.819 kb on - strandat 561.819 kb on - strandat 561.819 kb on - strandat 561.819 kb on - strandat 561.819 kb on - strandat 561.822 kb on + strandat 561.822 kb on + strandat 561.823 kb on - strandat 561.823 kb on - strandat 561.823 kb on - strandat 561.823 kb on - strandat 561.922 kb on - strandat 561.959 kb on - strandat 561.962 kb on + strandat 561.962 kb on + strandat 561.962 kb on + strandat 561.962 kb on + strandat 562.120 kb on + strand, within fixXat 562.120 kb on + strand, within fixXat 562.120 kb on + strand, within fixXat 562.121 kb on - strand, within fixXat 562.458 kb on + strand, within fixXat 562.458 kb on + strand, within fixXat 562.462 kb on + strand, within fixXat 562.462 kb on + strand, within fixXat 562.462 kb on + strand, within fixXat 562.462 kb on + strand, within fixXat 562.462 kb on + strand, within fixXat 562.462 kb on + strand, within fixXat 562.462 kb on + strand, within fixXat 562.463 kb on - strand, within fixXat 562.463 kb on - strand, within fixXat 562.463 kb on - strand, within fixXat 562.463 kb on - strand, within fixXat 562.463 kb on - strand, within fixXat 562.463 kb on - strand, within fixXat 562.463 kb on - strand, within fixXat 562.463 kb on - strand, within fixXat 562.463 kb on - strand, within fixXat 562.463 kb on - strand, within fixXat 562.463 kb on - strand, within fixXat 562.463 kb on - strand, within fixXat 562.463 kb on - strand, within fixXat 562.610 kb on - strand, within fixXat 562.625 kb on - strand, within fixXat 562.625 kb on - strand, within fixXat 562.625 kb on - strand, within fixXat 562.655 kb on + strand, within fixXat 562.655 kb on + strand, within fixXat 562.719 kb on + strand, within fixXat 562.720 kb on - strand, within fixXat 562.853 kb on - strand, within fixXat 562.864 kb on + strand, within fixXat 562.864 kb on + strand, within fixXat 562.864 kb on + strand, within fixXat 562.865 kb on - strand, within fixXat 562.865 kb on - strand, within fixXat 562.866 kb on + strand, within fixXat 562.866 kb on + strand, within fixXat 562.867 kb on - strand, within fixXat 563.114 kb on + strand, within fixXat 563.114 kb on + strand, within fixXat 563.141 kb on + strand, within fixXat 563.171 kb on + strand, within fixXat 563.172 kb on - strand, within fixXat 563.238 kb on + strand, within fixXat 563.238 kb on + strand, within fixXat 563.239 kb on - strand, within fixX

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECOR27
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561,029 - yaaU NOLOHH_03210 0.33 +1.4
561,040 + yaaU NOLOHH_03210 0.34 -0.1
561,041 - yaaU NOLOHH_03210 0.34 +1.2
561,129 + yaaU NOLOHH_03210 0.41 -0.3
561,129 + yaaU NOLOHH_03210 0.41 +0.7
561,129 + yaaU NOLOHH_03210 0.41 -0.6
561,130 - yaaU NOLOHH_03210 0.41 -0.9
561,206 - yaaU NOLOHH_03210 0.47 -0.0
561,318 - yaaU NOLOHH_03210 0.55 +0.2
561,420 + yaaU NOLOHH_03210 0.63 +0.2
561,421 - yaaU NOLOHH_03210 0.63 -0.5
561,462 + yaaU NOLOHH_03210 0.66 +1.7
561,462 + yaaU NOLOHH_03210 0.66 -1.8
561,463 - yaaU NOLOHH_03210 0.66 +0.7
561,463 - yaaU NOLOHH_03210 0.66 +4.5
561,463 - yaaU NOLOHH_03210 0.66 +2.2
561,463 - yaaU NOLOHH_03210 0.66 +1.1
561,463 - yaaU NOLOHH_03210 0.66 -0.1
561,571 + yaaU NOLOHH_03210 0.74 -1.9
561,575 + yaaU NOLOHH_03210 0.74 -0.0
561,691 + yaaU NOLOHH_03210 0.83 +2.0
561,692 - yaaU NOLOHH_03210 0.83 +0.2
561,693 + yaaU NOLOHH_03210 0.83 +0.7
561,818 + +0.1
561,818 + -0.8
561,818 + -0.8
561,819 - +0.1
561,819 - -0.1
561,819 - -1.7
561,819 - +1.1
561,819 - +0.9
561,822 + -0.9
561,822 + -1.3
561,823 - +1.0
561,823 - +0.7
561,823 - -0.1
561,823 - +0.4
561,922 - -0.4
561,959 - -0.6
561,962 + +0.7
561,962 + +0.2
561,962 + -0.5
561,962 + +0.1
562,120 + fixX NOLOHH_03215 0.50 -0.5
562,120 + fixX NOLOHH_03215 0.50 +0.1
562,120 + fixX NOLOHH_03215 0.50 +1.2
562,121 - fixX NOLOHH_03215 0.51 -1.0
562,458 + fixX NOLOHH_03220 0.15 +0.0
562,458 + fixX NOLOHH_03220 0.15 +0.8
562,462 + fixX NOLOHH_03220 0.16 +0.4
562,462 + fixX NOLOHH_03220 0.16 +0.7
562,462 + fixX NOLOHH_03220 0.16 +0.7
562,462 + fixX NOLOHH_03220 0.16 +0.1
562,462 + fixX NOLOHH_03220 0.16 -0.2
562,462 + fixX NOLOHH_03220 0.16 +0.4
562,462 + fixX NOLOHH_03220 0.16 +0.9
562,463 - fixX NOLOHH_03220 0.16 +0.4
562,463 - fixX NOLOHH_03220 0.16 +0.7
562,463 - fixX NOLOHH_03220 0.16 -0.9
562,463 - fixX NOLOHH_03220 0.16 -1.6
562,463 - fixX NOLOHH_03220 0.16 -0.9
562,463 - fixX NOLOHH_03220 0.16 +1.0
562,463 - fixX NOLOHH_03220 0.16 -0.3
562,463 - fixX NOLOHH_03220 0.16 +1.1
562,463 - fixX NOLOHH_03220 0.16 +0.2
562,463 - fixX NOLOHH_03220 0.16 -0.7
562,463 - fixX NOLOHH_03220 0.16 +0.2
562,463 - fixX NOLOHH_03220 0.16 +0.8
562,463 - fixX NOLOHH_03220 0.16 -0.1
562,610 - fixX NOLOHH_03220 0.27 -0.4
562,625 - fixX NOLOHH_03220 0.28 +0.2
562,625 - fixX NOLOHH_03220 0.28 +0.6
562,625 - fixX NOLOHH_03220 0.28 +0.3
562,655 + fixX NOLOHH_03220 0.31 -0.2
562,655 + fixX NOLOHH_03220 0.31 -1.9
562,719 + fixX NOLOHH_03220 0.36 +0.6
562,720 - fixX NOLOHH_03220 0.36 -1.7
562,853 - fixX NOLOHH_03220 0.46 +1.0
562,864 + fixX NOLOHH_03220 0.47 +0.3
562,864 + fixX NOLOHH_03220 0.47 +1.6
562,864 + fixX NOLOHH_03220 0.47 +0.0
562,865 - fixX NOLOHH_03220 0.47 +1.8
562,865 - fixX NOLOHH_03220 0.47 +0.2
562,866 + fixX NOLOHH_03220 0.47 +1.4
562,866 + fixX NOLOHH_03220 0.47 -0.4
562,867 - fixX NOLOHH_03220 0.47 +1.6
563,114 + fixX NOLOHH_03220 0.66 -0.2
563,114 + fixX NOLOHH_03220 0.66 +2.2
563,141 + fixX NOLOHH_03220 0.69 +1.3
563,171 + fixX NOLOHH_03220 0.71 -0.4
563,172 - fixX NOLOHH_03220 0.71 +1.1
563,238 + fixX NOLOHH_03220 0.76 +2.0
563,238 + fixX NOLOHH_03220 0.76 -1.7
563,239 - fixX NOLOHH_03220 0.76 -0.1

Or see this region's nucleotide sequence