Strain Fitness in Escherichia coli ECOR27 around NOLOHH_03055

Experiment: Control_ECOR27

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntleuO and leuL are separated by 659 nucleotidesleuL and NOLOHH_03060 are separated by 92 nucleotides NOLOHH_03050: leuO - transcriptional regulator LeuO, at 523,918 to 524,862 leuO NOLOHH_03055: leuL - leu operon leader peptide, at 525,522 to 525,608 leuL NOLOHH_03060: NOLOHH_03060 - 2-isopropylmalate synthase, at 525,701 to 527,272 _03060 Position (kb) 525 526Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 524.524 kb on + strand, within leuOat 524.578 kb on + strand, within leuOat 524.579 kb on - strand, within leuOat 524.637 kb on + strand, within leuOat 524.637 kb on + strand, within leuOat 524.638 kb on - strand, within leuOat 524.638 kb on - strand, within leuOat 524.671 kb on - strand, within leuOat 524.721 kb on + strand, within leuOat 524.722 kb on - strand, within leuOat 524.785 kb on + strandat 524.785 kb on + strandat 524.785 kb on + strandat 524.786 kb on - strandat 524.786 kb on - strandat 524.806 kb on + strandat 524.807 kb on - strandat 524.807 kb on - strandat 524.807 kb on - strandat 524.884 kb on + strandat 524.884 kb on + strandat 524.885 kb on - strandat 524.937 kb on + strandat 524.937 kb on + strandat 524.938 kb on - strandat 525.052 kb on - strandat 525.097 kb on - strandat 525.117 kb on + strandat 525.196 kb on - strandat 525.237 kb on + strandat 525.329 kb on + strandat 525.359 kb on - strandat 525.402 kb on + strandat 525.488 kb on + strandat 525.489 kb on - strandat 525.496 kb on + strandat 525.520 kb on + strandat 525.521 kb on - strandat 525.550 kb on + strand, within leuLat 525.553 kb on + strand, within leuLat 525.554 kb on - strand, within leuLat 525.559 kb on + strand, within leuLat 525.559 kb on + strand, within leuLat 525.560 kb on - strand, within leuLat 525.756 kb on + strandat 525.910 kb on - strand, within NOLOHH_03060at 525.910 kb on - strand, within NOLOHH_03060at 525.910 kb on - strand, within NOLOHH_03060at 525.910 kb on - strand, within NOLOHH_03060at 525.910 kb on - strand, within NOLOHH_03060at 525.919 kb on - strand, within NOLOHH_03060at 525.941 kb on - strand, within NOLOHH_03060at 525.998 kb on - strand, within NOLOHH_03060at 526.066 kb on + strand, within NOLOHH_03060at 526.066 kb on + strand, within NOLOHH_03060at 526.070 kb on + strand, within NOLOHH_03060at 526.070 kb on + strand, within NOLOHH_03060at 526.070 kb on + strand, within NOLOHH_03060at 526.070 kb on + strand, within NOLOHH_03060at 526.070 kb on + strand, within NOLOHH_03060at 526.071 kb on - strand, within NOLOHH_03060at 526.071 kb on - strand, within NOLOHH_03060at 526.071 kb on - strand, within NOLOHH_03060at 526.071 kb on - strand, within NOLOHH_03060at 526.071 kb on - strand, within NOLOHH_03060at 526.071 kb on - strand, within NOLOHH_03060at 526.071 kb on - strand, within NOLOHH_03060at 526.071 kb on - strand, within NOLOHH_03060at 526.177 kb on + strand, within NOLOHH_03060at 526.272 kb on + strand, within NOLOHH_03060at 526.273 kb on - strand, within NOLOHH_03060at 526.276 kb on + strand, within NOLOHH_03060at 526.276 kb on + strand, within NOLOHH_03060at 526.277 kb on - strand, within NOLOHH_03060at 526.277 kb on - strand, within NOLOHH_03060at 526.294 kb on + strand, within NOLOHH_03060at 526.295 kb on - strand, within NOLOHH_03060at 526.302 kb on + strand, within NOLOHH_03060at 526.306 kb on + strand, within NOLOHH_03060at 526.306 kb on + strand, within NOLOHH_03060at 526.307 kb on - strand, within NOLOHH_03060at 526.307 kb on - strand, within NOLOHH_03060at 526.307 kb on - strand, within NOLOHH_03060at 526.307 kb on - strand, within NOLOHH_03060at 526.321 kb on - strand, within NOLOHH_03060at 526.354 kb on - strand, within NOLOHH_03060at 526.354 kb on - strand, within NOLOHH_03060at 526.354 kb on - strand, within NOLOHH_03060at 526.497 kb on + strand, within NOLOHH_03060at 526.498 kb on - strand, within NOLOHH_03060at 526.515 kb on + strand, within NOLOHH_03060at 526.516 kb on - strand, within NOLOHH_03060at 526.516 kb on - strand, within NOLOHH_03060at 526.516 kb on - strand, within NOLOHH_03060at 526.531 kb on + strand, within NOLOHH_03060at 526.531 kb on + strand, within NOLOHH_03060at 526.532 kb on - strand, within NOLOHH_03060at 526.534 kb on + strand, within NOLOHH_03060at 526.535 kb on - strand, within NOLOHH_03060

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECOR27
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524,524 + leuO NOLOHH_03050 0.64 +0.9
524,578 + leuO NOLOHH_03050 0.70 +0.6
524,579 - leuO NOLOHH_03050 0.70 +0.2
524,637 + leuO NOLOHH_03050 0.76 +0.1
524,637 + leuO NOLOHH_03050 0.76 -0.9
524,638 - leuO NOLOHH_03050 0.76 -0.4
524,638 - leuO NOLOHH_03050 0.76 -0.1
524,671 - leuO NOLOHH_03050 0.80 -0.9
524,721 + leuO NOLOHH_03050 0.85 -3.2
524,722 - leuO NOLOHH_03050 0.85 +0.6
524,785 + +1.0
524,785 + +0.1
524,785 + +0.6
524,786 - +0.6
524,786 - +1.2
524,806 + +1.0
524,807 - +1.6
524,807 - +0.1
524,807 - -0.1
524,884 + +0.6
524,884 + -1.2
524,885 - -0.1
524,937 + +0.2
524,937 + -0.4
524,938 - -0.4
525,052 - -1.1
525,097 - +0.1
525,117 + -1.7
525,196 - -0.4
525,237 + +0.3
525,329 + +1.2
525,359 - +1.6
525,402 + +1.1
525,488 + +1.0
525,489 - -0.9
525,496 + +0.2
525,520 + -0.7
525,521 - +0.1
525,550 + leuL NOLOHH_03055 0.32 +0.6
525,553 + leuL NOLOHH_03055 0.36 -0.9
525,554 - leuL NOLOHH_03055 0.37 -1.4
525,559 + leuL NOLOHH_03055 0.43 -0.7
525,559 + leuL NOLOHH_03055 0.43 +0.1
525,560 - leuL NOLOHH_03055 0.44 -0.1
525,756 + +0.2
525,910 - NOLOHH_03060 0.13 +2.1
525,910 - NOLOHH_03060 0.13 -0.1
525,910 - NOLOHH_03060 0.13 +0.3
525,910 - NOLOHH_03060 0.13 +0.2
525,910 - NOLOHH_03060 0.13 +1.2
525,919 - NOLOHH_03060 0.14 +0.3
525,941 - NOLOHH_03060 0.15 -0.2
525,998 - NOLOHH_03060 0.19 -0.1
526,066 + NOLOHH_03060 0.23 -1.2
526,066 + NOLOHH_03060 0.23 +0.1
526,070 + NOLOHH_03060 0.23 -0.5
526,070 + NOLOHH_03060 0.23 -0.9
526,070 + NOLOHH_03060 0.23 -0.6
526,070 + NOLOHH_03060 0.23 +0.4
526,070 + NOLOHH_03060 0.23 -0.5
526,071 - NOLOHH_03060 0.24 -0.0
526,071 - NOLOHH_03060 0.24 +0.3
526,071 - NOLOHH_03060 0.24 +1.5
526,071 - NOLOHH_03060 0.24 -1.1
526,071 - NOLOHH_03060 0.24 +0.2
526,071 - NOLOHH_03060 0.24 -0.4
526,071 - NOLOHH_03060 0.24 -0.7
526,071 - NOLOHH_03060 0.24 +0.1
526,177 + NOLOHH_03060 0.30 -0.8
526,272 + NOLOHH_03060 0.36 +0.4
526,273 - NOLOHH_03060 0.36 +0.6
526,276 + NOLOHH_03060 0.37 -0.5
526,276 + NOLOHH_03060 0.37 -0.1
526,277 - NOLOHH_03060 0.37 +1.6
526,277 - NOLOHH_03060 0.37 -1.6
526,294 + NOLOHH_03060 0.38 +0.5
526,295 - NOLOHH_03060 0.38 +0.6
526,302 + NOLOHH_03060 0.38 -1.7
526,306 + NOLOHH_03060 0.38 -1.4
526,306 + NOLOHH_03060 0.38 +0.8
526,307 - NOLOHH_03060 0.39 -0.1
526,307 - NOLOHH_03060 0.39 -0.7
526,307 - NOLOHH_03060 0.39 -0.9
526,307 - NOLOHH_03060 0.39 -0.4
526,321 - NOLOHH_03060 0.39 +0.4
526,354 - NOLOHH_03060 0.42 +0.2
526,354 - NOLOHH_03060 0.42 +0.6
526,354 - NOLOHH_03060 0.42 -0.4
526,497 + NOLOHH_03060 0.51 -0.8
526,498 - NOLOHH_03060 0.51 -0.6
526,515 + NOLOHH_03060 0.52 -0.2
526,516 - NOLOHH_03060 0.52 -0.2
526,516 - NOLOHH_03060 0.52 -0.6
526,516 - NOLOHH_03060 0.52 -0.6
526,531 + NOLOHH_03060 0.53 -1.2
526,531 + NOLOHH_03060 0.53 -0.6
526,532 - NOLOHH_03060 0.53 -1.4
526,534 + NOLOHH_03060 0.53 -0.4
526,535 - NOLOHH_03060 0.53 +1.6

Or see this region's nucleotide sequence