Experiment: Control_ECOR27
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt mraZ and cra are separated by 601 nucleotides cra and fruL are separated by 81 nucleotides fruL and ilvN are separated by 32 nucleotides ilvN and ilvI are separated by 2 nucleotides
NOLOHH_03025: mraZ - division/cell wall cluster transcriptional repressor MraZ, at 519,138 to 519,596
mraZ
NOLOHH_03030: cra - catabolite repressor/activator, at 520,198 to 521,202
cra
NOLOHH_03035: fruL - Putative fruR/shl operon leader peptide, at 521,284 to 521,349
fruL
NOLOHH_03040: ilvN - acetolactate synthase small subunit, at 521,382 to 521,873
ilvN
NOLOHH_03045: ilvI - acetolactate synthase 3 large subunit, at 521,876 to 523,600
ilvI
Position (kb) 520
521
522 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 519.201 kb on - strand, within mraZ at 519.364 kb on - strand, within mraZ at 519.455 kb on - strand, within mraZ at 519.577 kb on - strand at 519.702 kb on - strand at 519.739 kb on + strand at 519.740 kb on - strand at 519.745 kb on - strand at 519.745 kb on - strand at 519.768 kb on - strand at 519.774 kb on - strand at 519.780 kb on - strand at 519.846 kb on + strand at 519.848 kb on + strand at 519.849 kb on - strand at 519.880 kb on + strand at 519.887 kb on + strand at 519.887 kb on + strand at 519.887 kb on + strand at 519.887 kb on + strand at 519.888 kb on - strand at 519.888 kb on - strand at 519.888 kb on - strand at 519.888 kb on - strand at 519.972 kb on + strand at 520.034 kb on + strand at 520.034 kb on + strand at 520.038 kb on + strand at 520.039 kb on - strand at 520.063 kb on - strand at 520.063 kb on - strand at 520.089 kb on + strand at 520.095 kb on + strand at 520.098 kb on + strand at 520.114 kb on + strand at 520.114 kb on + strand at 520.114 kb on + strand at 520.115 kb on - strand at 520.118 kb on + strand at 520.119 kb on - strand at 520.130 kb on - strand at 520.199 kb on + strand at 520.199 kb on + strand at 520.200 kb on - strand at 520.233 kb on + strand at 520.234 kb on - strand at 520.234 kb on - strand at 520.234 kb on - strand at 520.357 kb on + strand, within cra at 520.358 kb on - strand, within cra at 520.358 kb on - strand, within cra at 520.429 kb on + strand, within cra at 520.429 kb on + strand, within cra at 520.544 kb on + strand, within cra at 520.544 kb on + strand, within cra at 520.544 kb on + strand, within cra at 520.545 kb on - strand, within cra at 520.545 kb on - strand, within cra at 520.652 kb on + strand, within cra at 520.677 kb on + strand, within cra at 520.678 kb on - strand, within cra at 520.678 kb on - strand, within cra at 520.682 kb on - strand, within cra at 520.682 kb on - strand, within cra at 520.802 kb on + strand, within cra at 520.803 kb on - strand, within cra at 520.861 kb on + strand, within cra at 520.862 kb on - strand, within cra at 520.875 kb on + strand, within cra at 520.918 kb on + strand, within cra at 520.958 kb on + strand, within cra at 520.958 kb on + strand, within cra at 520.977 kb on - strand, within cra at 521.013 kb on + strand, within cra at 521.014 kb on - strand, within cra at 521.014 kb on - strand, within cra at 521.063 kb on + strand, within cra at 521.142 kb on + strand at 521.142 kb on + strand at 521.143 kb on - strand at 521.143 kb on - strand at 521.147 kb on + strand at 521.147 kb on + strand at 521.147 kb on + strand at 521.148 kb on - strand at 521.148 kb on - strand at 521.148 kb on - strand at 521.148 kb on - strand at 521.217 kb on + strand at 521.242 kb on + strand at 521.242 kb on + strand at 521.243 kb on - strand at 521.285 kb on + strand at 521.391 kb on + strand at 521.391 kb on + strand at 521.391 kb on + strand at 521.392 kb on - strand at 521.392 kb on - strand at 521.392 kb on - strand at 521.502 kb on + strand, within ilvN at 521.503 kb on - strand, within ilvN at 521.503 kb on - strand, within ilvN at 521.513 kb on + strand, within ilvN at 521.515 kb on + strand, within ilvN at 521.516 kb on - strand, within ilvN at 521.537 kb on + strand, within ilvN at 521.564 kb on + strand, within ilvN at 521.565 kb on - strand, within ilvN at 521.565 kb on - strand, within ilvN at 521.682 kb on + strand, within ilvN at 521.682 kb on + strand, within ilvN at 521.683 kb on - strand, within ilvN at 521.683 kb on - strand, within ilvN at 521.683 kb on - strand, within ilvN at 521.683 kb on - strand, within ilvN at 521.683 kb on - strand, within ilvN at 521.738 kb on + strand, within ilvN at 521.739 kb on - strand, within ilvN at 521.859 kb on + strand at 521.863 kb on - strand at 521.873 kb on + strand at 521.966 kb on - strand at 521.990 kb on - strand at 522.069 kb on + strand, within ilvI at 522.070 kb on - strand, within ilvI at 522.070 kb on - strand, within ilvI at 522.109 kb on + strand, within ilvI at 522.110 kb on - strand, within ilvI at 522.110 kb on - strand, within ilvI at 522.110 kb on - strand, within ilvI at 522.111 kb on + strand, within ilvI at 522.111 kb on + strand, within ilvI at 522.111 kb on + strand, within ilvI at 522.111 kb on + strand, within ilvI at 522.111 kb on + strand, within ilvI at 522.111 kb on + strand, within ilvI at 522.112 kb on - strand, within ilvI at 522.112 kb on - strand, within ilvI at 522.112 kb on - strand, within ilvI at 522.112 kb on - strand, within ilvI at 522.112 kb on - strand, within ilvI at 522.112 kb on - strand, within ilvI at 522.112 kb on - strand, within ilvI at 522.112 kb on - strand, within ilvI at 522.112 kb on - strand, within ilvI at 522.112 kb on - strand, within ilvI at 522.112 kb on - strand, within ilvI at 522.112 kb on - strand, within ilvI at 522.112 kb on - strand, within ilvI at 522.112 kb on - strand, within ilvI at 522.112 kb on - strand, within ilvI at 522.135 kb on + strand, within ilvI at 522.135 kb on + strand, within ilvI
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECOR27 remove 519,201 - mraZ NOLOHH_03025 0.14 +0.1 519,364 - mraZ NOLOHH_03025 0.49 +0.2 519,455 - mraZ NOLOHH_03025 0.69 -0.4 519,577 - +0.8 519,702 - +0.8 519,739 + -0.1 519,740 - +0.1 519,745 - +0.1 519,745 - +0.6 519,768 - +0.6 519,774 - -1.1 519,780 - -1.2 519,846 + -0.1 519,848 + +1.4 519,849 - +0.3 519,880 + -0.8 519,887 + -0.2 519,887 + +1.7 519,887 + -0.2 519,887 + -0.1 519,888 - +0.3 519,888 - +0.8 519,888 - -0.4 519,888 - +1.0 519,972 + -0.1 520,034 + +0.2 520,034 + -0.9 520,038 + +0.9 520,039 - -1.9 520,063 - -1.0 520,063 - +0.7 520,089 + -0.9 520,095 + -0.2 520,098 + +1.2 520,114 + +0.2 520,114 + -1.4 520,114 + -0.2 520,115 - +0.1 520,118 + -0.4 520,119 - -0.9 520,130 - +1.3 520,199 + +0.6 520,199 + +1.6 520,200 - +0.2 520,233 + -0.4 520,234 - -0.9 520,234 - -1.4 520,234 - +0.6 520,357 + cra NOLOHH_03030 0.16 +0.6 520,358 - cra NOLOHH_03030 0.16 +1.2 520,358 - cra NOLOHH_03030 0.16 +0.6 520,429 + cra NOLOHH_03030 0.23 -0.7 520,429 + cra NOLOHH_03030 0.23 +1.6 520,544 + cra NOLOHH_03030 0.34 +1.2 520,544 + cra NOLOHH_03030 0.34 -1.7 520,544 + cra NOLOHH_03030 0.34 +0.1 520,545 - cra NOLOHH_03030 0.35 -0.4 520,545 - cra NOLOHH_03030 0.35 -0.9 520,652 + cra NOLOHH_03030 0.45 -1.7 520,677 + cra NOLOHH_03030 0.48 -0.4 520,678 - cra NOLOHH_03030 0.48 +0.6 520,678 - cra NOLOHH_03030 0.48 +1.6 520,682 - cra NOLOHH_03030 0.48 +0.6 520,682 - cra NOLOHH_03030 0.48 +0.6 520,802 + cra NOLOHH_03030 0.60 -0.9 520,803 - cra NOLOHH_03030 0.60 -0.4 520,861 + cra NOLOHH_03030 0.66 -1.4 520,862 - cra NOLOHH_03030 0.66 -1.7 520,875 + cra NOLOHH_03030 0.67 +0.6 520,918 + cra NOLOHH_03030 0.72 -0.9 520,958 + cra NOLOHH_03030 0.76 +0.1 520,958 + cra NOLOHH_03030 0.76 -0.1 520,977 - cra NOLOHH_03030 0.78 -0.4 521,013 + cra NOLOHH_03030 0.81 +0.9 521,014 - cra NOLOHH_03030 0.81 -0.6 521,014 - cra NOLOHH_03030 0.81 +0.6 521,063 + cra NOLOHH_03030 0.86 -0.4 521,142 + -0.9 521,142 + +0.6 521,143 - +0.6 521,143 - -1.4 521,147 + -1.9 521,147 + +0.6 521,147 + -0.4 521,148 - -1.4 521,148 - -0.7 521,148 - -1.4 521,148 - +1.1 521,217 + -1.2 521,242 + -0.7 521,242 + -0.6 521,243 - +0.3 521,285 + +0.1 521,391 + +1.6 521,391 + -0.9 521,391 + +0.2 521,392 - +1.4 521,392 - -1.7 521,392 - -0.1 521,502 + ilvN NOLOHH_03040 0.24 -0.7 521,503 - ilvN NOLOHH_03040 0.25 -1.5 521,503 - ilvN NOLOHH_03040 0.25 +0.6 521,513 + ilvN NOLOHH_03040 0.27 +0.4 521,515 + ilvN NOLOHH_03040 0.27 -0.8 521,516 - ilvN NOLOHH_03040 0.27 +0.2 521,537 + ilvN NOLOHH_03040 0.32 +1.1 521,564 + ilvN NOLOHH_03040 0.37 -0.1 521,565 - ilvN NOLOHH_03040 0.37 +1.0 521,565 - ilvN NOLOHH_03040 0.37 -0.9 521,682 + ilvN NOLOHH_03040 0.61 -1.9 521,682 + ilvN NOLOHH_03040 0.61 +0.6 521,683 - ilvN NOLOHH_03040 0.61 -0.8 521,683 - ilvN NOLOHH_03040 0.61 -0.8 521,683 - ilvN NOLOHH_03040 0.61 +0.5 521,683 - ilvN NOLOHH_03040 0.61 -0.5 521,683 - ilvN NOLOHH_03040 0.61 +0.4 521,738 + ilvN NOLOHH_03040 0.72 +0.6 521,739 - ilvN NOLOHH_03040 0.73 +0.6 521,859 + +0.6 521,863 - -0.1 521,873 + +1.9 521,966 - +0.1 521,990 - -0.1 522,069 + ilvI NOLOHH_03045 0.11 +1.6 522,070 - ilvI NOLOHH_03045 0.11 -0.9 522,070 - ilvI NOLOHH_03045 0.11 +0.6 522,109 + ilvI NOLOHH_03045 0.14 -1.1 522,110 - ilvI NOLOHH_03045 0.14 -0.3 522,110 - ilvI NOLOHH_03045 0.14 +0.2 522,110 - ilvI NOLOHH_03045 0.14 -1.4 522,111 + ilvI NOLOHH_03045 0.14 -0.2 522,111 + ilvI NOLOHH_03045 0.14 +0.8 522,111 + ilvI NOLOHH_03045 0.14 +0.3 522,111 + ilvI NOLOHH_03045 0.14 -1.2 522,111 + ilvI NOLOHH_03045 0.14 -0.4 522,111 + ilvI NOLOHH_03045 0.14 +1.2 522,112 - ilvI NOLOHH_03045 0.14 +0.4 522,112 - ilvI NOLOHH_03045 0.14 +0.6 522,112 - ilvI NOLOHH_03045 0.14 +0.0 522,112 - ilvI NOLOHH_03045 0.14 +0.3 522,112 - ilvI NOLOHH_03045 0.14 -0.5 522,112 - ilvI NOLOHH_03045 0.14 +0.1 522,112 - ilvI NOLOHH_03045 0.14 +0.9 522,112 - ilvI NOLOHH_03045 0.14 -2.2 522,112 - ilvI NOLOHH_03045 0.14 -0.2 522,112 - ilvI NOLOHH_03045 0.14 +0.4 522,112 - ilvI NOLOHH_03045 0.14 +0.3 522,112 - ilvI NOLOHH_03045 0.14 +0.1 522,112 - ilvI NOLOHH_03045 0.14 -0.3 522,112 - ilvI NOLOHH_03045 0.14 +0.1 522,112 - ilvI NOLOHH_03045 0.14 +0.2 522,135 + ilvI NOLOHH_03045 0.15 +0.3 522,135 + ilvI NOLOHH_03045 0.15 -3.2
Or see this region's nucleotide sequence