Experiment: Control_ECOR27
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt cueO and yacC are separated by 204 nucleotides yacC and speE are separated by 105 nucleotides speE and speD are separated by 15 nucleotides
NOLOHH_02800: cueO - multicopper oxidase CueO, at 470,810 to 472,360
cueO
NOLOHH_02805: yacC - YacC family pilotin-like protein, at 472,565 to 472,873
yacC
NOLOHH_02810: speE - polyamine aminopropyltransferase, at 472,979 to 473,845
speE
NOLOHH_02815: speD - adenosylmethionine decarboxylase, at 473,861 to 474,655
speD
Position (kb) 472
473 Strain fitness (log2 ratio) -2
-1
0
1
2 at 471.569 kb on + strand, within cueO at 471.597 kb on + strand, within cueO at 471.597 kb on + strand, within cueO at 471.598 kb on - strand, within cueO at 471.643 kb on + strand, within cueO at 471.851 kb on + strand, within cueO at 471.952 kb on + strand, within cueO at 471.952 kb on + strand, within cueO at 471.952 kb on + strand, within cueO at 471.952 kb on + strand, within cueO at 471.952 kb on + strand, within cueO at 471.953 kb on - strand, within cueO at 472.006 kb on + strand, within cueO at 472.006 kb on + strand, within cueO at 472.006 kb on + strand, within cueO at 472.007 kb on - strand, within cueO at 472.007 kb on - strand, within cueO at 472.089 kb on + strand, within cueO at 472.089 kb on + strand, within cueO at 472.089 kb on + strand, within cueO at 472.089 kb on + strand, within cueO at 472.089 kb on + strand, within cueO at 472.090 kb on - strand, within cueO at 472.090 kb on - strand, within cueO at 472.090 kb on - strand, within cueO at 472.090 kb on - strand, within cueO at 472.090 kb on - strand, within cueO at 472.090 kb on - strand, within cueO at 472.121 kb on + strand, within cueO at 472.155 kb on + strand, within cueO at 472.155 kb on + strand, within cueO at 472.156 kb on - strand, within cueO at 472.156 kb on - strand, within cueO at 472.156 kb on - strand, within cueO at 472.156 kb on - strand, within cueO at 472.165 kb on + strand, within cueO at 472.165 kb on + strand, within cueO at 472.165 kb on + strand, within cueO at 472.165 kb on + strand, within cueO at 472.165 kb on + strand, within cueO at 472.166 kb on - strand, within cueO at 472.166 kb on - strand, within cueO at 472.207 kb on + strand at 472.208 kb on - strand at 472.360 kb on + strand at 472.360 kb on + strand at 472.360 kb on + strand at 472.360 kb on + strand at 472.361 kb on - strand at 472.361 kb on - strand at 472.364 kb on + strand at 472.365 kb on - strand at 472.365 kb on - strand at 472.410 kb on + strand at 472.410 kb on + strand at 472.463 kb on - strand at 472.498 kb on + strand at 472.499 kb on - strand at 472.499 kb on - strand at 472.519 kb on - strand at 472.586 kb on + strand at 472.674 kb on + strand, within yacC at 472.674 kb on + strand, within yacC at 472.674 kb on + strand, within yacC at 472.674 kb on + strand, within yacC at 472.675 kb on - strand, within yacC at 472.679 kb on - strand, within yacC at 472.738 kb on + strand, within yacC at 472.739 kb on - strand, within yacC at 472.739 kb on - strand, within yacC at 472.739 kb on - strand, within yacC at 472.739 kb on - strand, within yacC at 472.742 kb on + strand, within yacC at 472.742 kb on + strand, within yacC at 472.742 kb on + strand, within yacC at 472.863 kb on - strand at 472.871 kb on + strand at 472.882 kb on - strand at 472.897 kb on + strand at 472.898 kb on - strand at 472.924 kb on + strand at 472.924 kb on + strand at 472.925 kb on - strand at 472.928 kb on + strand at 472.928 kb on + strand at 472.932 kb on - strand at 472.932 kb on - strand at 473.030 kb on + strand at 473.030 kb on + strand at 473.030 kb on + strand at 473.031 kb on - strand at 473.115 kb on + strand, within speE at 473.115 kb on + strand, within speE at 473.161 kb on + strand, within speE at 473.165 kb on + strand, within speE at 473.165 kb on + strand, within speE at 473.165 kb on + strand, within speE at 473.165 kb on + strand, within speE at 473.337 kb on - strand, within speE at 473.341 kb on - strand, within speE at 473.341 kb on - strand, within speE at 473.654 kb on + strand, within speE at 473.654 kb on + strand, within speE at 473.657 kb on + strand, within speE
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECOR27 remove 471,569 + cueO NOLOHH_02800 0.49 -0.9 471,597 + cueO NOLOHH_02800 0.51 -0.4 471,597 + cueO NOLOHH_02800 0.51 -0.4 471,598 - cueO NOLOHH_02800 0.51 +1.6 471,643 + cueO NOLOHH_02800 0.54 +0.8 471,851 + cueO NOLOHH_02800 0.67 -0.4 471,952 + cueO NOLOHH_02800 0.74 -0.6 471,952 + cueO NOLOHH_02800 0.74 +0.1 471,952 + cueO NOLOHH_02800 0.74 -0.5 471,952 + cueO NOLOHH_02800 0.74 -0.7 471,952 + cueO NOLOHH_02800 0.74 -0.3 471,953 - cueO NOLOHH_02800 0.74 -0.0 472,006 + cueO NOLOHH_02800 0.77 +0.5 472,006 + cueO NOLOHH_02800 0.77 +0.2 472,006 + cueO NOLOHH_02800 0.77 -0.6 472,007 - cueO NOLOHH_02800 0.77 +0.3 472,007 - cueO NOLOHH_02800 0.77 +1.4 472,089 + cueO NOLOHH_02800 0.82 -1.7 472,089 + cueO NOLOHH_02800 0.82 +0.1 472,089 + cueO NOLOHH_02800 0.82 +1.2 472,089 + cueO NOLOHH_02800 0.82 +0.1 472,089 + cueO NOLOHH_02800 0.82 -0.2 472,090 - cueO NOLOHH_02800 0.83 +0.5 472,090 - cueO NOLOHH_02800 0.83 -0.3 472,090 - cueO NOLOHH_02800 0.83 -0.2 472,090 - cueO NOLOHH_02800 0.83 +0.1 472,090 - cueO NOLOHH_02800 0.83 +0.5 472,090 - cueO NOLOHH_02800 0.83 +1.6 472,121 + cueO NOLOHH_02800 0.85 -0.4 472,155 + cueO NOLOHH_02800 0.87 -0.9 472,155 + cueO NOLOHH_02800 0.87 +0.0 472,156 - cueO NOLOHH_02800 0.87 +0.6 472,156 - cueO NOLOHH_02800 0.87 +0.1 472,156 - cueO NOLOHH_02800 0.87 +0.1 472,156 - cueO NOLOHH_02800 0.87 -0.2 472,165 + cueO NOLOHH_02800 0.87 -0.4 472,165 + cueO NOLOHH_02800 0.87 +0.1 472,165 + cueO NOLOHH_02800 0.87 +1.0 472,165 + cueO NOLOHH_02800 0.87 +1.6 472,165 + cueO NOLOHH_02800 0.87 -0.4 472,166 - cueO NOLOHH_02800 0.87 +1.2 472,166 - cueO NOLOHH_02800 0.87 -0.1 472,207 + -0.4 472,208 - -1.5 472,360 + -0.4 472,360 + -2.2 472,360 + -1.1 472,360 + -0.3 472,361 - -0.4 472,361 - +0.1 472,364 + +0.1 472,365 - -0.1 472,365 - -1.1 472,410 + -1.4 472,410 + -0.1 472,463 - -0.2 472,498 + -0.2 472,499 - -0.9 472,499 - -0.9 472,519 - -0.7 472,586 + +0.2 472,674 + yacC NOLOHH_02805 0.35 -0.0 472,674 + yacC NOLOHH_02805 0.35 +0.6 472,674 + yacC NOLOHH_02805 0.35 -0.1 472,674 + yacC NOLOHH_02805 0.35 -1.5 472,675 - yacC NOLOHH_02805 0.36 -1.7 472,679 - yacC NOLOHH_02805 0.37 -1.5 472,738 + yacC NOLOHH_02805 0.56 +0.1 472,739 - yacC NOLOHH_02805 0.56 -2.4 472,739 - yacC NOLOHH_02805 0.56 -1.9 472,739 - yacC NOLOHH_02805 0.56 -0.2 472,739 - yacC NOLOHH_02805 0.56 -0.7 472,742 + yacC NOLOHH_02805 0.57 -0.8 472,742 + yacC NOLOHH_02805 0.57 -0.5 472,742 + yacC NOLOHH_02805 0.57 -1.7 472,863 - +1.1 472,871 + +2.0 472,882 - +0.6 472,897 + +0.1 472,898 - -0.1 472,924 + -0.5 472,924 + +0.8 472,925 - +0.6 472,928 + -0.4 472,928 + -1.2 472,932 - -0.2 472,932 - +0.2 473,030 + -0.4 473,030 + -1.2 473,030 + -0.8 473,031 - -1.7 473,115 + speE NOLOHH_02810 0.16 +0.1 473,115 + speE NOLOHH_02810 0.16 +0.1 473,161 + speE NOLOHH_02810 0.21 -0.5 473,165 + speE NOLOHH_02810 0.21 -0.5 473,165 + speE NOLOHH_02810 0.21 +1.6 473,165 + speE NOLOHH_02810 0.21 +1.1 473,165 + speE NOLOHH_02810 0.21 -0.6 473,337 - speE NOLOHH_02810 0.41 -1.7 473,341 - speE NOLOHH_02810 0.42 -0.2 473,341 - speE NOLOHH_02810 0.42 -1.2 473,654 + speE NOLOHH_02810 0.78 -1.5 473,654 + speE NOLOHH_02810 0.78 +0.6 473,657 + speE NOLOHH_02810 0.78 -0.2
Or see this region's nucleotide sequence