Experiment: Control_ECOR27
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yadG and can are separated by 108 nucleotides can and hpt are separated by 40 nucleotides hpt and gcd are separated by 205 nucleotides
NOLOHH_02780: yadG - Uncharacterized ABC transporter ATP-binding protein YadG, at 465,893 to 466,819
yadG
NOLOHH_02785: can - carbonate dehydratase, at 466,928 to 467,590
can
NOLOHH_02790: hpt - hypoxanthine phosphoribosyltransferase, at 467,631 to 468,167
hpt
NOLOHH_02795: gcd - quinoprotein glucose dehydrogenase, at 468,373 to 470,763
gcd
Position (kb) 467
468
469 Strain fitness (log2 ratio) -2
-1
0
1
2 at 466.651 kb on + strand, within yadG at 466.651 kb on + strand, within yadG at 466.655 kb on + strand, within yadG at 466.669 kb on + strand, within yadG at 466.780 kb on - strand at 466.831 kb on + strand at 466.831 kb on + strand at 466.832 kb on - strand at 466.837 kb on - strand at 466.837 kb on - strand at 466.845 kb on - strand at 467.588 kb on + strand at 467.588 kb on + strand at 467.589 kb on - strand at 467.633 kb on - strand at 467.662 kb on + strand at 467.662 kb on + strand at 467.663 kb on - strand at 467.663 kb on - strand at 467.689 kb on + strand, within hpt at 467.690 kb on - strand, within hpt at 467.690 kb on - strand, within hpt at 467.690 kb on - strand, within hpt at 467.790 kb on - strand, within hpt at 467.790 kb on - strand, within hpt at 467.823 kb on + strand, within hpt at 467.824 kb on - strand, within hpt at 467.824 kb on - strand, within hpt at 467.824 kb on - strand, within hpt at 467.824 kb on - strand, within hpt at 467.850 kb on - strand, within hpt at 467.867 kb on + strand, within hpt at 467.868 kb on - strand, within hpt at 467.868 kb on - strand, within hpt at 467.960 kb on - strand, within hpt at 467.976 kb on - strand, within hpt at 467.994 kb on + strand, within hpt at 468.029 kb on + strand, within hpt at 468.029 kb on + strand, within hpt at 468.029 kb on + strand, within hpt at 468.030 kb on - strand, within hpt at 468.030 kb on - strand, within hpt at 468.030 kb on - strand, within hpt at 468.092 kb on + strand, within hpt at 468.148 kb on - strand at 468.153 kb on + strand at 468.153 kb on + strand at 468.154 kb on - strand at 468.158 kb on + strand at 468.247 kb on + strand at 468.247 kb on + strand at 468.248 kb on - strand at 468.248 kb on - strand at 468.248 kb on - strand at 468.249 kb on + strand at 468.249 kb on + strand at 468.249 kb on + strand at 468.250 kb on - strand at 468.261 kb on + strand at 468.261 kb on + strand at 468.262 kb on - strand at 468.285 kb on - strand at 468.381 kb on + strand at 468.381 kb on + strand at 468.381 kb on + strand at 468.388 kb on - strand at 468.449 kb on - strand at 468.449 kb on - strand at 468.452 kb on + strand at 468.452 kb on + strand at 468.453 kb on - strand at 468.453 kb on - strand at 468.499 kb on + strand at 468.504 kb on + strand at 468.772 kb on - strand, within gcd at 468.821 kb on + strand, within gcd at 468.849 kb on + strand, within gcd at 468.850 kb on - strand, within gcd at 468.850 kb on - strand, within gcd at 468.850 kb on - strand, within gcd at 468.883 kb on + strand, within gcd at 468.948 kb on + strand, within gcd at 468.949 kb on - strand, within gcd at 468.975 kb on + strand, within gcd at 469.055 kb on - strand, within gcd at 469.120 kb on + strand, within gcd at 469.160 kb on + strand, within gcd
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECOR27 remove 466,651 + yadG NOLOHH_02780 0.82 +0.5 466,651 + yadG NOLOHH_02780 0.82 -1.0 466,655 + yadG NOLOHH_02780 0.82 -0.1 466,669 + yadG NOLOHH_02780 0.84 -1.7 466,780 - -0.4 466,831 + -0.1 466,831 + +1.2 466,832 - +0.1 466,837 - +0.6 466,837 - +0.6 466,845 - +0.6 467,588 + -0.3 467,588 + -0.1 467,589 - -1.1 467,633 - -1.2 467,662 + -1.9 467,662 + -0.6 467,663 - -0.9 467,663 - -0.9 467,689 + hpt NOLOHH_02790 0.11 -0.7 467,690 - hpt NOLOHH_02790 0.11 -1.7 467,690 - hpt NOLOHH_02790 0.11 -0.8 467,690 - hpt NOLOHH_02790 0.11 +1.4 467,790 - hpt NOLOHH_02790 0.30 -2.4 467,790 - hpt NOLOHH_02790 0.30 -2.4 467,823 + hpt NOLOHH_02790 0.36 -1.4 467,824 - hpt NOLOHH_02790 0.36 -1.2 467,824 - hpt NOLOHH_02790 0.36 +1.6 467,824 - hpt NOLOHH_02790 0.36 +0.9 467,824 - hpt NOLOHH_02790 0.36 -0.6 467,850 - hpt NOLOHH_02790 0.41 -1.4 467,867 + hpt NOLOHH_02790 0.44 -0.7 467,868 - hpt NOLOHH_02790 0.44 -2.2 467,868 - hpt NOLOHH_02790 0.44 -2.5 467,960 - hpt NOLOHH_02790 0.61 -0.2 467,976 - hpt NOLOHH_02790 0.64 -0.6 467,994 + hpt NOLOHH_02790 0.68 +0.6 468,029 + hpt NOLOHH_02790 0.74 -0.4 468,029 + hpt NOLOHH_02790 0.74 +1.6 468,029 + hpt NOLOHH_02790 0.74 -0.4 468,030 - hpt NOLOHH_02790 0.74 -0.7 468,030 - hpt NOLOHH_02790 0.74 -0.4 468,030 - hpt NOLOHH_02790 0.74 -0.9 468,092 + hpt NOLOHH_02790 0.86 -0.5 468,148 - -0.5 468,153 + -0.4 468,153 + -0.4 468,154 - -1.4 468,158 + +0.6 468,247 + -0.2 468,247 + +0.1 468,248 - -0.2 468,248 - -2.1 468,248 - +0.6 468,249 + -0.9 468,249 + +0.3 468,249 + +0.5 468,250 - +0.1 468,261 + -0.9 468,261 + +0.1 468,262 - +0.1 468,285 - +0.3 468,381 + +1.1 468,381 + +1.4 468,381 + -0.5 468,388 - -1.4 468,449 - -1.1 468,449 - +0.2 468,452 + +0.3 468,452 + +2.1 468,453 - -0.1 468,453 - +0.6 468,499 + +1.6 468,504 + -0.3 468,772 - gcd NOLOHH_02795 0.17 +0.1 468,821 + gcd NOLOHH_02795 0.19 +0.3 468,849 + gcd NOLOHH_02795 0.20 +0.7 468,850 - gcd NOLOHH_02795 0.20 +0.6 468,850 - gcd NOLOHH_02795 0.20 -0.4 468,850 - gcd NOLOHH_02795 0.20 -1.7 468,883 + gcd NOLOHH_02795 0.21 +0.6 468,948 + gcd NOLOHH_02795 0.24 -0.9 468,949 - gcd NOLOHH_02795 0.24 +0.2 468,975 + gcd NOLOHH_02795 0.25 +0.4 469,055 - gcd NOLOHH_02795 0.29 +0.8 469,120 + gcd NOLOHH_02795 0.31 -0.1 469,160 + gcd NOLOHH_02795 0.33 -0.3
Or see this region's nucleotide sequence