Experiment: Control_ECOR27
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt cdaR and degP are separated by 154 nucleotides degP and dgt are separated by 129 nucleotides
NOLOHH_02595: cdaR - DNA-binding transcriptional regulator CdaR, at 426,053 to 427,210
cdaR
NOLOHH_02600: degP - serine endoprotease DegP, at 427,365 to 428,789
degP
NOLOHH_02605: dgt - dGTPase, at 428,919 to 430,436
dgt
Position (kb) 427
428
429 Strain fitness (log2 ratio) -2
-1
0
1
2 at 426.421 kb on - strand, within cdaR at 426.421 kb on - strand, within cdaR at 426.433 kb on + strand, within cdaR at 426.433 kb on + strand, within cdaR at 426.453 kb on + strand, within cdaR at 426.453 kb on + strand, within cdaR at 426.453 kb on + strand, within cdaR at 426.454 kb on - strand, within cdaR at 426.454 kb on - strand, within cdaR at 426.527 kb on - strand, within cdaR at 426.656 kb on + strand, within cdaR at 426.764 kb on - strand, within cdaR at 426.764 kb on - strand, within cdaR at 426.764 kb on - strand, within cdaR at 426.776 kb on - strand, within cdaR at 426.904 kb on + strand, within cdaR at 426.905 kb on - strand, within cdaR at 426.938 kb on + strand, within cdaR at 427.081 kb on + strand, within cdaR at 427.082 kb on - strand, within cdaR at 427.082 kb on - strand, within cdaR at 427.082 kb on - strand, within cdaR at 427.127 kb on + strand at 427.127 kb on + strand at 427.127 kb on + strand at 427.127 kb on + strand at 427.127 kb on + strand at 427.127 kb on + strand at 427.128 kb on - strand at 427.128 kb on - strand at 427.128 kb on - strand at 427.128 kb on - strand at 427.136 kb on - strand at 427.159 kb on + strand at 427.160 kb on - strand at 427.160 kb on - strand at 427.160 kb on - strand at 427.160 kb on - strand at 427.160 kb on - strand at 427.171 kb on + strand at 427.210 kb on + strand at 427.210 kb on + strand at 427.210 kb on + strand at 427.211 kb on - strand at 427.211 kb on - strand at 427.211 kb on - strand at 427.211 kb on - strand at 427.211 kb on - strand at 427.238 kb on + strand at 427.239 kb on - strand at 427.246 kb on + strand at 427.246 kb on + strand at 427.247 kb on - strand at 427.250 kb on + strand at 427.251 kb on - strand at 427.293 kb on + strand at 427.293 kb on + strand at 427.294 kb on - strand at 427.294 kb on - strand at 427.323 kb on - strand at 427.381 kb on + strand at 427.382 kb on - strand at 427.382 kb on - strand at 427.382 kb on - strand at 427.721 kb on + strand, within degP at 427.721 kb on + strand, within degP at 427.722 kb on - strand, within degP at 427.722 kb on - strand, within degP at 427.722 kb on - strand, within degP at 427.722 kb on - strand, within degP at 427.911 kb on - strand, within degP at 427.911 kb on - strand, within degP at 427.911 kb on - strand, within degP at 427.979 kb on + strand, within degP at 428.088 kb on - strand, within degP at 428.128 kb on + strand, within degP at 428.225 kb on - strand, within degP at 428.225 kb on - strand, within degP at 428.262 kb on - strand, within degP at 428.262 kb on - strand, within degP at 428.262 kb on - strand, within degP at 428.349 kb on - strand, within degP at 428.372 kb on + strand, within degP at 428.373 kb on - strand, within degP at 428.373 kb on - strand, within degP at 428.416 kb on + strand, within degP at 428.417 kb on - strand, within degP at 428.417 kb on - strand, within degP at 428.589 kb on - strand, within degP at 428.597 kb on + strand, within degP at 428.597 kb on + strand, within degP at 428.598 kb on - strand, within degP at 428.598 kb on - strand, within degP at 428.619 kb on + strand, within degP at 428.619 kb on + strand, within degP at 428.620 kb on - strand, within degP at 428.773 kb on - strand at 428.773 kb on - strand at 428.792 kb on - strand at 428.792 kb on - strand at 428.813 kb on + strand at 428.848 kb on - strand at 428.985 kb on - strand at 428.986 kb on + strand at 428.986 kb on + strand at 428.987 kb on - strand at 429.017 kb on - strand at 429.017 kb on - strand at 429.073 kb on + strand, within dgt at 429.073 kb on + strand, within dgt at 429.074 kb on - strand, within dgt at 429.162 kb on - strand, within dgt at 429.294 kb on + strand, within dgt at 429.294 kb on + strand, within dgt at 429.294 kb on + strand, within dgt at 429.411 kb on - strand, within dgt at 429.434 kb on - strand, within dgt at 429.470 kb on + strand, within dgt at 429.622 kb on + strand, within dgt at 429.623 kb on - strand, within dgt at 429.686 kb on + strand, within dgt at 429.686 kb on + strand, within dgt at 429.687 kb on - strand, within dgt at 429.710 kb on + strand, within dgt at 429.711 kb on - strand, within dgt at 429.712 kb on + strand, within dgt at 429.713 kb on - strand, within dgt at 429.713 kb on - strand, within dgt
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECOR27 remove 426,421 - cdaR NOLOHH_02595 0.32 +1.0 426,421 - cdaR NOLOHH_02595 0.32 -0.1 426,433 + cdaR NOLOHH_02595 0.33 -0.2 426,433 + cdaR NOLOHH_02595 0.33 +0.6 426,453 + cdaR NOLOHH_02595 0.35 -0.4 426,453 + cdaR NOLOHH_02595 0.35 -1.0 426,453 + cdaR NOLOHH_02595 0.35 +0.9 426,454 - cdaR NOLOHH_02595 0.35 +0.6 426,454 - cdaR NOLOHH_02595 0.35 -0.2 426,527 - cdaR NOLOHH_02595 0.41 -0.9 426,656 + cdaR NOLOHH_02595 0.52 -0.3 426,764 - cdaR NOLOHH_02595 0.61 -1.4 426,764 - cdaR NOLOHH_02595 0.61 +1.0 426,764 - cdaR NOLOHH_02595 0.61 +1.4 426,776 - cdaR NOLOHH_02595 0.62 -0.2 426,904 + cdaR NOLOHH_02595 0.73 +1.2 426,905 - cdaR NOLOHH_02595 0.74 -0.1 426,938 + cdaR NOLOHH_02595 0.76 +0.6 427,081 + cdaR NOLOHH_02595 0.89 -2.1 427,082 - cdaR NOLOHH_02595 0.89 +0.9 427,082 - cdaR NOLOHH_02595 0.89 +0.0 427,082 - cdaR NOLOHH_02595 0.89 +0.3 427,127 + +0.6 427,127 + +0.0 427,127 + +0.1 427,127 + +0.4 427,127 + +0.8 427,127 + +1.0 427,128 - +0.5 427,128 - +1.6 427,128 - -0.4 427,128 - -0.8 427,136 - -0.6 427,159 + -1.4 427,160 - -0.3 427,160 - -1.5 427,160 - -0.4 427,160 - -0.2 427,160 - +0.6 427,171 + +0.2 427,210 + -0.8 427,210 + -0.4 427,210 + -0.1 427,211 - -0.4 427,211 - -1.4 427,211 - +0.3 427,211 - -1.7 427,211 - +2.2 427,238 + -1.1 427,239 - -0.2 427,246 + +0.9 427,246 + -0.9 427,247 - -0.7 427,250 + +0.3 427,251 - -1.7 427,293 + -0.8 427,293 + +0.6 427,294 - +0.6 427,294 - +0.9 427,323 - -0.4 427,381 + +0.2 427,382 - +0.4 427,382 - +0.3 427,382 - -1.0 427,721 + degP NOLOHH_02600 0.25 -0.4 427,721 + degP NOLOHH_02600 0.25 -1.4 427,722 - degP NOLOHH_02600 0.25 -0.5 427,722 - degP NOLOHH_02600 0.25 -0.2 427,722 - degP NOLOHH_02600 0.25 -0.2 427,722 - degP NOLOHH_02600 0.25 -0.2 427,911 - degP NOLOHH_02600 0.38 +1.6 427,911 - degP NOLOHH_02600 0.38 +0.6 427,911 - degP NOLOHH_02600 0.38 -0.1 427,979 + degP NOLOHH_02600 0.43 +0.6 428,088 - degP NOLOHH_02600 0.51 -0.8 428,128 + degP NOLOHH_02600 0.54 -1.0 428,225 - degP NOLOHH_02600 0.60 -0.6 428,225 - degP NOLOHH_02600 0.60 -1.4 428,262 - degP NOLOHH_02600 0.63 -1.8 428,262 - degP NOLOHH_02600 0.63 -2.4 428,262 - degP NOLOHH_02600 0.63 -0.5 428,349 - degP NOLOHH_02600 0.69 +0.6 428,372 + degP NOLOHH_02600 0.71 -1.2 428,373 - degP NOLOHH_02600 0.71 -0.2 428,373 - degP NOLOHH_02600 0.71 +1.0 428,416 + degP NOLOHH_02600 0.74 -1.5 428,417 - degP NOLOHH_02600 0.74 +0.6 428,417 - degP NOLOHH_02600 0.74 +0.6 428,589 - degP NOLOHH_02600 0.86 -0.1 428,597 + degP NOLOHH_02600 0.86 -1.0 428,597 + degP NOLOHH_02600 0.86 -1.2 428,598 - degP NOLOHH_02600 0.87 -0.1 428,598 - degP NOLOHH_02600 0.87 -2.0 428,619 + degP NOLOHH_02600 0.88 -0.4 428,619 + degP NOLOHH_02600 0.88 -0.4 428,620 - degP NOLOHH_02600 0.88 -1.6 428,773 - -0.4 428,773 - -2.4 428,792 - -1.7 428,792 - +1.6 428,813 + -0.2 428,848 - +0.0 428,985 - -0.7 428,986 + -1.5 428,986 + +0.1 428,987 - +1.1 429,017 - +0.6 429,017 - +2.2 429,073 + dgt NOLOHH_02605 0.10 -0.1 429,073 + dgt NOLOHH_02605 0.10 -1.7 429,074 - dgt NOLOHH_02605 0.10 -2.0 429,162 - dgt NOLOHH_02605 0.16 -0.1 429,294 + dgt NOLOHH_02605 0.25 +1.3 429,294 + dgt NOLOHH_02605 0.25 +1.4 429,294 + dgt NOLOHH_02605 0.25 -1.7 429,411 - dgt NOLOHH_02605 0.32 -0.4 429,434 - dgt NOLOHH_02605 0.34 -0.1 429,470 + dgt NOLOHH_02605 0.36 -0.1 429,622 + dgt NOLOHH_02605 0.46 +2.2 429,623 - dgt NOLOHH_02605 0.46 +0.3 429,686 + dgt NOLOHH_02605 0.51 +0.0 429,686 + dgt NOLOHH_02605 0.51 +0.4 429,687 - dgt NOLOHH_02605 0.51 -0.4 429,710 + dgt NOLOHH_02605 0.52 -0.1 429,711 - dgt NOLOHH_02605 0.52 -2.2 429,712 + dgt NOLOHH_02605 0.52 +0.6 429,713 - dgt NOLOHH_02605 0.52 +0.9 429,713 - dgt NOLOHH_02605 0.52 -0.6
Or see this region's nucleotide sequence