Experiment: Control_ECOR27
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dxs and yajO are separated by 54 nucleotides yajO and pgpA are separated by 53 nucleotides pgpA and thiL overlap by 23 nucleotides
NOLOHH_01370: dxs - 1-deoxy-D-xylulose-5-phosphate synthase, at 166,029 to 167,891
dxs
NOLOHH_01375: yajO - 1-deoxyxylulose-5-phosphate synthase YajO, at 167,946 to 168,920
yajO
NOLOHH_01380: pgpA - phosphatidylglycerophosphatase A, at 168,974 to 169,492
pgpA
NOLOHH_01385: thiL - thiamine-phosphate kinase, at 169,470 to 170,447
thiL
Position (kb) 167
168
169 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 167.910 kb on + strand at 167.910 kb on + strand at 167.910 kb on + strand at 167.911 kb on - strand at 167.916 kb on + strand at 167.952 kb on + strand at 167.952 kb on + strand at 167.952 kb on + strand at 167.953 kb on - strand at 167.953 kb on - strand at 167.953 kb on - strand at 167.953 kb on - strand at 168.005 kb on + strand at 168.005 kb on + strand at 168.006 kb on - strand at 168.006 kb on - strand at 168.078 kb on - strand, within yajO at 168.122 kb on + strand, within yajO at 168.122 kb on + strand, within yajO at 168.123 kb on - strand, within yajO at 168.126 kb on + strand, within yajO at 168.127 kb on - strand, within yajO at 168.303 kb on + strand, within yajO at 168.303 kb on + strand, within yajO at 168.304 kb on - strand, within yajO at 168.304 kb on - strand, within yajO at 168.336 kb on + strand, within yajO at 168.383 kb on - strand, within yajO at 168.402 kb on + strand, within yajO at 168.404 kb on + strand, within yajO at 168.405 kb on - strand, within yajO at 168.488 kb on + strand, within yajO at 168.502 kb on - strand, within yajO at 168.666 kb on - strand, within yajO at 168.801 kb on - strand, within yajO at 168.801 kb on - strand, within yajO at 168.801 kb on - strand, within yajO at 168.914 kb on + strand at 168.919 kb on - strand at 168.976 kb on - strand at 169.015 kb on - strand at 169.121 kb on - strand, within pgpA at 169.208 kb on - strand, within pgpA at 169.345 kb on - strand, within pgpA
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECOR27 remove 167,910 + +3.5 167,910 + +1.0 167,910 + +0.1 167,911 - -0.3 167,916 + -0.6 167,952 + +0.7 167,952 + -0.3 167,952 + +0.7 167,953 - +0.7 167,953 - -0.0 167,953 - +1.3 167,953 - -1.9 168,005 + -0.9 168,005 + -1.3 168,006 - +0.3 168,006 - -1.7 168,078 - yajO NOLOHH_01375 0.14 -2.3 168,122 + yajO NOLOHH_01375 0.18 -2.1 168,122 + yajO NOLOHH_01375 0.18 -1.5 168,123 - yajO NOLOHH_01375 0.18 -1.3 168,126 + yajO NOLOHH_01375 0.18 -1.7 168,127 - yajO NOLOHH_01375 0.19 +0.1 168,303 + yajO NOLOHH_01375 0.37 -0.3 168,303 + yajO NOLOHH_01375 0.37 -2.3 168,304 - yajO NOLOHH_01375 0.37 -1.7 168,304 - yajO NOLOHH_01375 0.37 +1.7 168,336 + yajO NOLOHH_01375 0.40 -0.3 168,383 - yajO NOLOHH_01375 0.45 +0.7 168,402 + yajO NOLOHH_01375 0.47 -0.2 168,404 + yajO NOLOHH_01375 0.47 +0.3 168,405 - yajO NOLOHH_01375 0.47 -1.7 168,488 + yajO NOLOHH_01375 0.56 +0.1 168,502 - yajO NOLOHH_01375 0.57 +0.7 168,666 - yajO NOLOHH_01375 0.74 -0.3 168,801 - yajO NOLOHH_01375 0.88 +1.7 168,801 - yajO NOLOHH_01375 0.88 -0.9 168,801 - yajO NOLOHH_01375 0.88 -0.9 168,914 + +0.4 168,919 - -1.7 168,976 - +0.7 169,015 - -2.1 169,121 - pgpA NOLOHH_01380 0.28 -0.7 169,208 - pgpA NOLOHH_01380 0.45 -0.9 169,345 - pgpA NOLOHH_01380 0.71 +1.3
Or see this region's nucleotide sequence