Experiment: Control_ECOR27
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt htpG and recR are separated by 109 nucleotides recR and ybaB overlap by 1 nucleotides ybaB and dnaX are separated by 52 nucleotides
NOLOHH_01080: htpG - molecular chaperone HtpG, at 105,662 to 107,536
htpG
NOLOHH_01085: recR - recombination mediator RecR, at 107,646 to 108,251
recR
NOLOHH_01090: ybaB - YbaB/EbfC family nucleoid-associated protein, at 108,251 to 108,580
ybaB
NOLOHH_01095: dnaX - DNA polymerase III subunit gamma/tau, at 108,633 to 110,564
dnaX
Position (kb) 107
108
109 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 106.675 kb on + strand, within htpG at 106.676 kb on - strand, within htpG at 106.676 kb on - strand, within htpG at 106.676 kb on - strand, within htpG at 106.701 kb on + strand, within htpG at 106.701 kb on + strand, within htpG at 106.702 kb on - strand, within htpG at 106.716 kb on + strand, within htpG at 106.716 kb on + strand, within htpG at 106.717 kb on - strand, within htpG at 106.788 kb on + strand, within htpG at 106.789 kb on - strand, within htpG at 106.829 kb on - strand, within htpG at 106.938 kb on + strand, within htpG at 106.939 kb on - strand, within htpG at 106.945 kb on + strand, within htpG at 107.052 kb on + strand, within htpG at 107.053 kb on - strand, within htpG at 107.117 kb on - strand, within htpG at 107.154 kb on + strand, within htpG at 107.155 kb on - strand, within htpG at 107.155 kb on - strand, within htpG at 107.155 kb on - strand, within htpG at 107.367 kb on + strand at 107.368 kb on - strand at 107.381 kb on - strand at 107.385 kb on - strand at 107.385 kb on - strand at 107.463 kb on + strand at 107.538 kb on + strand at 107.538 kb on + strand at 107.538 kb on + strand at 107.539 kb on - strand at 107.539 kb on - strand at 107.544 kb on + strand at 107.545 kb on - strand at 107.552 kb on + strand at 107.563 kb on + strand at 107.563 kb on + strand at 107.564 kb on - strand at 107.564 kb on - strand at 107.564 kb on - strand at 107.608 kb on - strand at 107.762 kb on - strand, within recR at 107.785 kb on + strand, within recR at 107.785 kb on + strand, within recR at 107.786 kb on - strand, within recR at 107.786 kb on - strand, within recR at 107.786 kb on - strand, within recR at 107.786 kb on - strand, within recR at 107.790 kb on - strand, within recR at 107.939 kb on - strand, within recR at 107.974 kb on + strand, within recR at 107.974 kb on + strand, within recR at 108.456 kb on - strand, within ybaB at 108.618 kb on - strand at 108.618 kb on - strand at 108.629 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECOR27 remove 106,675 + htpG NOLOHH_01080 0.54 -0.4 106,676 - htpG NOLOHH_01080 0.54 -0.9 106,676 - htpG NOLOHH_01080 0.54 -0.1 106,676 - htpG NOLOHH_01080 0.54 +1.1 106,701 + htpG NOLOHH_01080 0.55 -0.3 106,701 + htpG NOLOHH_01080 0.55 +0.3 106,702 - htpG NOLOHH_01080 0.55 +0.7 106,716 + htpG NOLOHH_01080 0.56 +0.7 106,716 + htpG NOLOHH_01080 0.56 +0.2 106,717 - htpG NOLOHH_01080 0.56 +0.7 106,788 + htpG NOLOHH_01080 0.60 +0.7 106,789 - htpG NOLOHH_01080 0.60 +0.5 106,829 - htpG NOLOHH_01080 0.62 +1.7 106,938 + htpG NOLOHH_01080 0.68 -1.6 106,939 - htpG NOLOHH_01080 0.68 -0.3 106,945 + htpG NOLOHH_01080 0.68 +0.1 107,052 + htpG NOLOHH_01080 0.74 +3.0 107,053 - htpG NOLOHH_01080 0.74 +0.7 107,117 - htpG NOLOHH_01080 0.78 -0.6 107,154 + htpG NOLOHH_01080 0.80 +0.3 107,155 - htpG NOLOHH_01080 0.80 +0.6 107,155 - htpG NOLOHH_01080 0.80 +0.7 107,155 - htpG NOLOHH_01080 0.80 +0.5 107,367 + +0.7 107,368 - +1.3 107,381 - -0.5 107,385 - -2.1 107,385 - -0.3 107,463 + +1.5 107,538 + -0.5 107,538 + -1.8 107,538 + +0.4 107,539 - +0.7 107,539 - -0.5 107,544 + +0.7 107,545 - +0.4 107,552 + +0.1 107,563 + -0.3 107,563 + -0.3 107,564 - +0.3 107,564 - -0.3 107,564 - +0.3 107,608 - +0.7 107,762 - recR NOLOHH_01085 0.19 -0.5 107,785 + recR NOLOHH_01085 0.23 -1.1 107,785 + recR NOLOHH_01085 0.23 +1.9 107,786 - recR NOLOHH_01085 0.23 +0.1 107,786 - recR NOLOHH_01085 0.23 +0.1 107,786 - recR NOLOHH_01085 0.23 -0.5 107,786 - recR NOLOHH_01085 0.23 -0.3 107,790 - recR NOLOHH_01085 0.24 +1.1 107,939 - recR NOLOHH_01085 0.48 -1.5 107,974 + recR NOLOHH_01085 0.54 +0.3 107,974 + recR NOLOHH_01085 0.54 -1.1 108,456 - ybaB NOLOHH_01090 0.62 -0.9 108,618 - +0.4 108,618 - -1.3 108,629 - +1.3
Or see this region's nucleotide sequence