Experiment: Control_ECOR27
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ybaP and ybaK are separated by 203 nucleotides ybaK and ushA are separated by 36 nucleotides
NOLOHH_01025: ybaP - Uncharacterized protein YbaP, at 94,680 to 95,474
ybaP
NOLOHH_01035: ybaK - Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK, at 95,678 to 96,157
ybaK
NOLOHH_01040: ushA - bifunctional UDP-sugar hydrolase/5'-nucleotidase, at 96,194 to 97,846
ushA
Position (kb) 95
96
97 Strain fitness (log2 ratio) -2
-1
0
1
2 at 94.734 kb on + strand at 94.734 kb on + strand at 94.913 kb on + strand, within ybaP at 94.913 kb on + strand, within ybaP at 94.922 kb on + strand, within ybaP at 94.923 kb on - strand, within ybaP at 95.019 kb on - strand, within ybaP at 95.111 kb on - strand, within ybaP at 95.111 kb on - strand, within ybaP at 95.135 kb on + strand, within ybaP at 95.135 kb on + strand, within ybaP at 95.135 kb on + strand, within ybaP at 95.136 kb on - strand, within ybaP at 95.136 kb on - strand, within ybaP at 95.136 kb on - strand, within ybaP at 95.136 kb on - strand, within ybaP at 95.240 kb on + strand, within ybaP at 95.306 kb on + strand, within ybaP at 95.306 kb on + strand, within ybaP at 95.306 kb on + strand, within ybaP at 95.307 kb on - strand, within ybaP at 95.307 kb on - strand, within ybaP at 95.309 kb on - strand, within ybaP at 95.309 kb on - strand, within ybaP at 95.309 kb on - strand, within ybaP at 95.340 kb on + strand, within ybaP at 95.386 kb on + strand, within ybaP at 95.410 kb on - strand at 95.431 kb on + strand at 95.431 kb on + strand at 95.431 kb on + strand at 95.431 kb on + strand at 95.431 kb on + strand at 95.432 kb on - strand at 95.432 kb on - strand at 95.531 kb on + strand at 95.531 kb on + strand at 95.531 kb on + strand at 95.532 kb on - strand at 95.556 kb on + strand at 95.592 kb on + strand at 95.593 kb on - strand at 95.593 kb on - strand at 95.638 kb on - strand at 95.660 kb on + strand at 95.735 kb on + strand, within ybaK at 96.052 kb on + strand, within ybaK at 96.056 kb on + strand, within ybaK at 96.056 kb on + strand, within ybaK at 96.056 kb on + strand, within ybaK at 96.056 kb on + strand, within ybaK at 96.057 kb on - strand, within ybaK at 96.261 kb on + strand at 96.262 kb on - strand at 96.262 kb on - strand at 96.262 kb on - strand at 96.262 kb on - strand at 96.262 kb on - strand at 96.262 kb on - strand at 96.262 kb on - strand at 96.295 kb on + strand at 96.304 kb on - strand at 96.510 kb on + strand, within ushA at 96.587 kb on - strand, within ushA at 96.587 kb on - strand, within ushA at 96.589 kb on - strand, within ushA at 96.695 kb on - strand, within ushA at 96.697 kb on + strand, within ushA at 96.698 kb on - strand, within ushA at 96.698 kb on - strand, within ushA at 96.698 kb on - strand, within ushA at 96.704 kb on + strand, within ushA at 96.756 kb on - strand, within ushA at 96.801 kb on - strand, within ushA at 96.801 kb on - strand, within ushA at 96.916 kb on + strand, within ushA at 96.967 kb on - strand, within ushA at 97.041 kb on + strand, within ushA at 97.042 kb on - strand, within ushA
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECOR27 remove 94,734 + +0.3 94,734 + +0.1 94,913 + ybaP NOLOHH_01025 0.29 -0.6 94,913 + ybaP NOLOHH_01025 0.29 +1.3 94,922 + ybaP NOLOHH_01025 0.30 -0.3 94,923 - ybaP NOLOHH_01025 0.31 +0.4 95,019 - ybaP NOLOHH_01025 0.43 +1.0 95,111 - ybaP NOLOHH_01025 0.54 -0.6 95,111 - ybaP NOLOHH_01025 0.54 -1.6 95,135 + ybaP NOLOHH_01025 0.57 -0.9 95,135 + ybaP NOLOHH_01025 0.57 +0.8 95,135 + ybaP NOLOHH_01025 0.57 +0.1 95,136 - ybaP NOLOHH_01025 0.57 +0.2 95,136 - ybaP NOLOHH_01025 0.57 -0.9 95,136 - ybaP NOLOHH_01025 0.57 +1.7 95,136 - ybaP NOLOHH_01025 0.57 +0.1 95,240 + ybaP NOLOHH_01025 0.70 -0.1 95,306 + ybaP NOLOHH_01025 0.79 -0.6 95,306 + ybaP NOLOHH_01025 0.79 +0.4 95,306 + ybaP NOLOHH_01025 0.79 -0.9 95,307 - ybaP NOLOHH_01025 0.79 +1.1 95,307 - ybaP NOLOHH_01025 0.79 +0.2 95,309 - ybaP NOLOHH_01025 0.79 +0.1 95,309 - ybaP NOLOHH_01025 0.79 -2.6 95,309 - ybaP NOLOHH_01025 0.79 +0.0 95,340 + ybaP NOLOHH_01025 0.83 +0.9 95,386 + ybaP NOLOHH_01025 0.89 +0.1 95,410 - +0.0 95,431 + -0.4 95,431 + -0.3 95,431 + -0.5 95,431 + -0.1 95,431 + -0.3 95,432 - -0.7 95,432 - +0.3 95,531 + -0.8 95,531 + -0.3 95,531 + +0.7 95,532 - +0.3 95,556 + -0.7 95,592 + -0.1 95,593 - +0.5 95,593 - +0.3 95,638 - -0.2 95,660 + +0.6 95,735 + ybaK NOLOHH_01035 0.12 +0.5 96,052 + ybaK NOLOHH_01035 0.78 +1.7 96,056 + ybaK NOLOHH_01035 0.79 +1.1 96,056 + ybaK NOLOHH_01035 0.79 -1.5 96,056 + ybaK NOLOHH_01035 0.79 -1.1 96,056 + ybaK NOLOHH_01035 0.79 -0.5 96,057 - ybaK NOLOHH_01035 0.79 +2.3 96,261 + -2.6 96,262 - +0.1 96,262 - -0.1 96,262 - +0.3 96,262 - -0.3 96,262 - +0.4 96,262 - -1.0 96,262 - +0.2 96,295 + -0.9 96,304 - -1.0 96,510 + ushA NOLOHH_01040 0.19 +1.3 96,587 - ushA NOLOHH_01040 0.24 +1.3 96,587 - ushA NOLOHH_01040 0.24 +0.4 96,589 - ushA NOLOHH_01040 0.24 -2.3 96,695 - ushA NOLOHH_01040 0.30 -0.9 96,697 + ushA NOLOHH_01040 0.30 -0.1 96,698 - ushA NOLOHH_01040 0.30 +0.7 96,698 - ushA NOLOHH_01040 0.30 +1.0 96,698 - ushA NOLOHH_01040 0.30 -0.1 96,704 + ushA NOLOHH_01040 0.31 +2.1 96,756 - ushA NOLOHH_01040 0.34 +0.4 96,801 - ushA NOLOHH_01040 0.37 -1.1 96,801 - ushA NOLOHH_01040 0.37 -0.5 96,916 + ushA NOLOHH_01040 0.44 -1.1 96,967 - ushA NOLOHH_01040 0.47 -0.5 97,041 + ushA NOLOHH_01040 0.51 +0.9 97,042 - ushA NOLOHH_01040 0.51 -1.6
Or see this region's nucleotide sequence