Strain Fitness in Escherichia coli ECOR27 around NOLOHH_00385

Experiment: Control_ECOR27

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNOLOHH_00375 and NOLOHH_00380 are separated by 93 nucleotidesNOLOHH_00380 and NOLOHH_00385 overlap by 11 nucleotidesNOLOHH_00385 and NOLOHH_00390 are separated by 8 nucleotidesNOLOHH_00390 and NOLOHH_00395 are separated by 72 nucleotides NOLOHH_00375: NOLOHH_00375 - hypothetical protein, at 22,127 to 22,456 _00375 NOLOHH_00380: NOLOHH_00380 - hypothetical protein, at 22,550 to 22,792 _00380 NOLOHH_00385: NOLOHH_00385 - hypothetical protein, at 22,782 to 23,051 _00385 NOLOHH_00390: NOLOHH_00390 - hypothetical protein, at 23,060 to 23,608 _00390 NOLOHH_00395: NOLOHH_00395 - molecular chaperone DnaJ, at 23,681 to 24,196 _00395 Position (kb) 22 23 24Strain fitness (log2 ratio) -2 -1 0 1at 21.975 kb on + strandat 21.986 kb on + strandat 22.039 kb on + strandat 22.129 kb on - strandat 22.132 kb on - strandat 22.135 kb on - strandat 22.135 kb on - strandat 22.512 kb on + strandat 22.512 kb on + strandat 22.555 kb on + strandat 22.636 kb on - strand, within NOLOHH_00380at 22.815 kb on - strand, within NOLOHH_00385at 23.022 kb on - strand, within NOLOHH_00385at 23.118 kb on - strand, within NOLOHH_00390at 23.121 kb on - strand, within NOLOHH_00390at 23.284 kb on - strand, within NOLOHH_00390at 23.414 kb on - strand, within NOLOHH_00390at 23.418 kb on - strand, within NOLOHH_00390at 23.462 kb on + strand, within NOLOHH_00390at 23.465 kb on - strand, within NOLOHH_00390at 23.634 kb on - strandat 23.655 kb on + strandat 23.656 kb on - strandat 23.740 kb on - strand, within NOLOHH_00395at 23.791 kb on + strand, within NOLOHH_00395at 23.791 kb on + strand, within NOLOHH_00395at 23.840 kb on - strand, within NOLOHH_00395at 23.867 kb on - strand, within NOLOHH_00395at 23.945 kb on - strand, within NOLOHH_00395at 23.974 kb on - strand, within NOLOHH_00395

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECOR27
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21,975 + +0.4
21,986 + +0.7
22,039 + +0.0
22,129 - -1.3
22,132 - -2.1
22,135 - -0.9
22,135 - -1.0
22,512 + +1.0
22,512 + -0.4
22,555 + +0.0
22,636 - NOLOHH_00380 0.35 -0.3
22,815 - NOLOHH_00385 0.12 -2.5
23,022 - NOLOHH_00385 0.89 -0.2
23,118 - NOLOHH_00390 0.11 +0.1
23,121 - NOLOHH_00390 0.11 -0.7
23,284 - NOLOHH_00390 0.41 -0.5
23,414 - NOLOHH_00390 0.64 -0.3
23,418 - NOLOHH_00390 0.65 +0.5
23,462 + NOLOHH_00390 0.73 -1.8
23,465 - NOLOHH_00390 0.74 -0.0
23,634 - -0.3
23,655 + +0.6
23,656 - -1.9
23,740 - NOLOHH_00395 0.11 -0.5
23,791 + NOLOHH_00395 0.21 -0.2
23,791 + NOLOHH_00395 0.21 -0.0
23,840 - NOLOHH_00395 0.31 +0.1
23,867 - NOLOHH_00395 0.36 +0.1
23,945 - NOLOHH_00395 0.51 -0.2
23,974 - NOLOHH_00395 0.57 +0.6

Or see this region's nucleotide sequence