Experiment: Control_ECOR27
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NOLOHH_00355 and NOLOHH_00360 are separated by 820 nucleotides NOLOHH_00360 and NOLOHH_00365 are separated by 2 nucleotides NOLOHH_00365 and NOLOHH_00370 are separated by 415 nucleotides
NOLOHH_00355: NOLOHH_00355 - hypothetical protein, at 18,088 to 18,537
_00355
NOLOHH_00360: NOLOHH_00360 - relaxase/mobilization nuclease, at 19,358 to 20,512
_00360
NOLOHH_00365: NOLOHH_00365 - hypothetical protein, at 20,515 to 21,057
_00365
NOLOHH_00370: NOLOHH_00370 - hypothetical protein, at 21,473 to 21,694
_00370
Position (kb) 19
20
21 Strain fitness (log2 ratio) -2
-1
0
1 at 18.537 kb on + strand at 18.559 kb on - strand at 18.563 kb on + strand at 18.566 kb on + strand at 18.575 kb on - strand at 18.638 kb on - strand at 18.638 kb on - strand at 18.729 kb on - strand at 18.821 kb on + strand at 18.822 kb on - strand at 18.912 kb on + strand at 18.912 kb on + strand at 18.941 kb on - strand at 18.941 kb on - strand at 18.941 kb on - strand at 18.945 kb on - strand at 18.945 kb on - strand at 18.945 kb on - strand at 18.976 kb on + strand at 18.976 kb on + strand at 18.977 kb on - strand at 18.977 kb on - strand at 18.977 kb on - strand at 18.977 kb on - strand at 18.977 kb on - strand at 18.982 kb on - strand at 19.051 kb on - strand at 19.088 kb on - strand at 19.089 kb on + strand at 19.097 kb on + strand at 19.100 kb on - strand at 19.104 kb on + strand at 19.105 kb on - strand at 19.123 kb on - strand at 19.136 kb on + strand at 19.136 kb on + strand at 19.140 kb on + strand at 19.241 kb on - strand at 19.241 kb on - strand at 19.242 kb on + strand at 19.255 kb on + strand at 19.255 kb on + strand at 19.255 kb on + strand at 19.256 kb on - strand at 19.256 kb on - strand at 19.256 kb on - strand at 19.258 kb on - strand at 19.274 kb on + strand at 19.274 kb on + strand at 19.274 kb on + strand at 19.275 kb on - strand at 19.459 kb on + strand at 19.460 kb on - strand at 19.484 kb on + strand, within NOLOHH_00360 at 19.484 kb on + strand, within NOLOHH_00360 at 19.485 kb on - strand, within NOLOHH_00360 at 19.485 kb on - strand, within NOLOHH_00360 at 19.485 kb on - strand, within NOLOHH_00360 at 19.517 kb on + strand, within NOLOHH_00360 at 19.517 kb on + strand, within NOLOHH_00360 at 19.518 kb on - strand, within NOLOHH_00360 at 19.518 kb on - strand, within NOLOHH_00360 at 19.550 kb on - strand, within NOLOHH_00360 at 19.601 kb on + strand, within NOLOHH_00360 at 19.688 kb on - strand, within NOLOHH_00360 at 19.774 kb on - strand, within NOLOHH_00360 at 19.835 kb on - strand, within NOLOHH_00360 at 19.835 kb on - strand, within NOLOHH_00360 at 19.947 kb on - strand, within NOLOHH_00360 at 19.947 kb on - strand, within NOLOHH_00360 at 19.986 kb on - strand, within NOLOHH_00360 at 20.137 kb on + strand, within NOLOHH_00360 at 20.137 kb on + strand, within NOLOHH_00360 at 20.141 kb on + strand, within NOLOHH_00360 at 20.199 kb on + strand, within NOLOHH_00360 at 20.199 kb on + strand, within NOLOHH_00360 at 20.204 kb on - strand, within NOLOHH_00360 at 20.225 kb on - strand, within NOLOHH_00360 at 20.235 kb on - strand, within NOLOHH_00360 at 20.269 kb on + strand, within NOLOHH_00360 at 20.352 kb on - strand, within NOLOHH_00360 at 20.403 kb on + strand at 20.516 kb on + strand at 21.034 kb on + strand at 21.050 kb on + strand at 21.050 kb on + strand at 21.051 kb on - strand at 21.229 kb on + strand at 21.230 kb on - strand at 21.271 kb on + strand at 21.370 kb on - strand at 21.411 kb on - strand at 21.455 kb on - strand at 21.455 kb on - strand at 21.455 kb on - strand at 21.501 kb on + strand, within NOLOHH_00370
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECOR27 remove 18,537 + +0.0 18,559 - +0.5 18,563 + -0.4 18,566 + +0.2 18,575 - +0.7 18,638 - -1.6 18,638 - -0.2 18,729 - +0.3 18,821 + -2.3 18,822 - +0.2 18,912 + -0.0 18,912 + -1.3 18,941 - -0.3 18,941 - +0.9 18,941 - +0.8 18,945 - +0.4 18,945 - -1.3 18,945 - -0.4 18,976 + +0.3 18,976 + +0.8 18,977 - -0.9 18,977 - -0.6 18,977 - -1.3 18,977 - +0.3 18,977 - -0.4 18,982 - -0.4 19,051 - -1.0 19,088 - -0.2 19,089 + +0.6 19,097 + +0.3 19,100 - -0.6 19,104 + +0.0 19,105 - -0.6 19,123 - -0.4 19,136 + -0.7 19,136 + -0.3 19,140 + -0.5 19,241 - -0.3 19,241 - -0.8 19,242 + -0.6 19,255 + -0.1 19,255 + +0.8 19,255 + +0.4 19,256 - -0.7 19,256 - -0.8 19,256 - +0.1 19,258 - -1.4 19,274 + -0.1 19,274 + -2.6 19,274 + -0.5 19,275 - -1.3 19,459 + -0.6 19,460 - -1.3 19,484 + NOLOHH_00360 0.11 -0.2 19,484 + NOLOHH_00360 0.11 -1.9 19,485 - NOLOHH_00360 0.11 -1.7 19,485 - NOLOHH_00360 0.11 -2.1 19,485 - NOLOHH_00360 0.11 -1.9 19,517 + NOLOHH_00360 0.14 -1.4 19,517 + NOLOHH_00360 0.14 -0.3 19,518 - NOLOHH_00360 0.14 -1.0 19,518 - NOLOHH_00360 0.14 -0.9 19,550 - NOLOHH_00360 0.17 -1.4 19,601 + NOLOHH_00360 0.21 -0.5 19,688 - NOLOHH_00360 0.29 -1.6 19,774 - NOLOHH_00360 0.36 -1.1 19,835 - NOLOHH_00360 0.41 +0.2 19,835 - NOLOHH_00360 0.41 -0.8 19,947 - NOLOHH_00360 0.51 -1.1 19,947 - NOLOHH_00360 0.51 -1.1 19,986 - NOLOHH_00360 0.54 -1.4 20,137 + NOLOHH_00360 0.67 -0.3 20,137 + NOLOHH_00360 0.67 -0.2 20,141 + NOLOHH_00360 0.68 +1.2 20,199 + NOLOHH_00360 0.73 -2.0 20,199 + NOLOHH_00360 0.73 -0.7 20,204 - NOLOHH_00360 0.73 -0.1 20,225 - NOLOHH_00360 0.75 -0.8 20,235 - NOLOHH_00360 0.76 -1.2 20,269 + NOLOHH_00360 0.79 -0.9 20,352 - NOLOHH_00360 0.86 -1.2 20,403 + -0.6 20,516 + -0.5 21,034 + -0.6 21,050 + -0.9 21,050 + +0.1 21,051 - -0.7 21,229 + -0.1 21,230 - -0.6 21,271 + -0.7 21,370 - -0.2 21,411 - -0.8 21,455 - -0.9 21,455 - -0.6 21,455 - -0.1 21,501 + NOLOHH_00370 0.13 -1.3
Or see this region's nucleotide sequence