Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_16860

Experiment: R2A_PIPES with Cobalt chloride 512 uM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntrhaT and OKGIIK_16855 are separated by 60 nucleotidesOKGIIK_16855 and OKGIIK_16860 are separated by 217 nucleotidesOKGIIK_16860 and groL are separated by 110 nucleotides OKGIIK_16850: rhaT - EamA family transporter, at 3,695,308 to 3,696,204 rhaT OKGIIK_16855: OKGIIK_16855 - Cation tolerance protein, at 3,696,265 to 3,696,618 _16855 OKGIIK_16860: OKGIIK_16860 - Co-chaperonin GroES, at 3,696,836 to 3,697,129 _16860 OKGIIK_16865: groL - chaperonin GroEL, at 3,697,240 to 3,698,889 groL Position (kb) 3696 3697 3698Strain fitness (log2 ratio) -2 -1 0 1 2at 3696.314 kb on + strand, within OKGIIK_16855at 3696.314 kb on + strand, within OKGIIK_16855at 3696.315 kb on - strand, within OKGIIK_16855at 3696.315 kb on - strand, within OKGIIK_16855at 3696.366 kb on - strand, within OKGIIK_16855at 3696.366 kb on - strand, within OKGIIK_16855at 3696.366 kb on - strand, within OKGIIK_16855at 3696.366 kb on - strand, within OKGIIK_16855at 3696.473 kb on + strand, within OKGIIK_16855at 3696.474 kb on - strand, within OKGIIK_16855at 3696.578 kb on + strand, within OKGIIK_16855at 3696.578 kb on + strand, within OKGIIK_16855at 3696.578 kb on + strand, within OKGIIK_16855at 3696.578 kb on + strand, within OKGIIK_16855at 3696.578 kb on + strand, within OKGIIK_16855at 3696.578 kb on + strand, within OKGIIK_16855at 3696.578 kb on + strand, within OKGIIK_16855at 3696.579 kb on - strand, within OKGIIK_16855at 3696.579 kb on - strand, within OKGIIK_16855at 3696.579 kb on - strand, within OKGIIK_16855at 3696.579 kb on - strand, within OKGIIK_16855at 3696.579 kb on - strand, within OKGIIK_16855at 3696.579 kb on - strand, within OKGIIK_16855at 3696.579 kb on - strand, within OKGIIK_16855at 3696.629 kb on + strandat 3696.629 kb on + strandat 3696.689 kb on + strandat 3696.689 kb on + strandat 3696.689 kb on + strandat 3696.689 kb on + strandat 3696.689 kb on + strandat 3696.689 kb on + strandat 3696.689 kb on + strandat 3696.689 kb on + strandat 3696.689 kb on + strandat 3696.689 kb on + strandat 3696.689 kb on + strandat 3696.689 kb on + strandat 3696.689 kb on + strandat 3696.689 kb on + strandat 3696.690 kb on - strandat 3696.690 kb on - strandat 3696.690 kb on - strandat 3696.690 kb on - strandat 3696.690 kb on - strandat 3696.690 kb on - strandat 3696.690 kb on - strandat 3696.690 kb on - strandat 3696.690 kb on - strandat 3696.690 kb on - strandat 3696.690 kb on - strandat 3696.690 kb on - strandat 3696.690 kb on - strandat 3696.690 kb on - strandat 3696.740 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Cobalt chloride 512 uM
remove
3,696,314 + OKGIIK_16855 0.14 -0.5
3,696,314 + OKGIIK_16855 0.14 +1.0
3,696,315 - OKGIIK_16855 0.14 -0.8
3,696,315 - OKGIIK_16855 0.14 -0.0
3,696,366 - OKGIIK_16855 0.29 -1.5
3,696,366 - OKGIIK_16855 0.29 +0.1
3,696,366 - OKGIIK_16855 0.29 +0.8
3,696,366 - OKGIIK_16855 0.29 +0.1
3,696,473 + OKGIIK_16855 0.59 -0.1
3,696,474 - OKGIIK_16855 0.59 -0.1
3,696,578 + OKGIIK_16855 0.88 -0.7
3,696,578 + OKGIIK_16855 0.88 -0.3
3,696,578 + OKGIIK_16855 0.88 -0.2
3,696,578 + OKGIIK_16855 0.88 +0.2
3,696,578 + OKGIIK_16855 0.88 -0.6
3,696,578 + OKGIIK_16855 0.88 -0.7
3,696,578 + OKGIIK_16855 0.88 -2.0
3,696,579 - OKGIIK_16855 0.89 +0.4
3,696,579 - OKGIIK_16855 0.89 -0.6
3,696,579 - OKGIIK_16855 0.89 +0.7
3,696,579 - OKGIIK_16855 0.89 -0.9
3,696,579 - OKGIIK_16855 0.89 +0.8
3,696,579 - OKGIIK_16855 0.89 -1.5
3,696,579 - OKGIIK_16855 0.89 -1.1
3,696,629 + +1.0
3,696,629 + +0.1
3,696,689 + -0.4
3,696,689 + +1.0
3,696,689 + +0.3
3,696,689 + -1.7
3,696,689 + +0.1
3,696,689 + -0.3
3,696,689 + -2.3
3,696,689 + -0.3
3,696,689 + +0.5
3,696,689 + +0.1
3,696,689 + +0.9
3,696,689 + +1.3
3,696,689 + +0.7
3,696,689 + -0.7
3,696,690 - -1.6
3,696,690 - -0.7
3,696,690 - +0.1
3,696,690 - +0.8
3,696,690 - +1.8
3,696,690 - -0.3
3,696,690 - +1.2
3,696,690 - +0.2
3,696,690 - +0.1
3,696,690 - -2.1
3,696,690 - -0.4
3,696,690 - +0.2
3,696,690 - -0.7
3,696,690 - +0.0
3,696,740 + +0.6

Or see this region's nucleotide sequence