Experiment: R2A_PIPES with Cobalt chloride 512 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKGIIK_16570 and dedA are separated by 9 nucleotides dedA and dnaG are separated by 130 nucleotides
OKGIIK_16570: OKGIIK_16570 - Bile acid:sodium symporter, at 3,641,911 to 3,642,912
_16570
OKGIIK_16575: dedA - DedA family protein, at 3,642,922 to 3,643,542
dedA
OKGIIK_16580: dnaG - DNA primase, at 3,643,673 to 3,645,460
dnaG
Position (kb)
3642
3643
3644 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3642.284 kb on + strand, within OKGIIK_16570 at 3642.284 kb on + strand, within OKGIIK_16570 at 3642.284 kb on + strand, within OKGIIK_16570 at 3642.284 kb on + strand, within OKGIIK_16570 at 3642.284 kb on + strand, within OKGIIK_16570 at 3642.284 kb on + strand, within OKGIIK_16570 at 3642.285 kb on - strand, within OKGIIK_16570 at 3642.285 kb on - strand, within OKGIIK_16570 at 3642.285 kb on - strand, within OKGIIK_16570 at 3642.285 kb on - strand, within OKGIIK_16570 at 3642.285 kb on - strand, within OKGIIK_16570 at 3642.285 kb on - strand, within OKGIIK_16570 at 3642.316 kb on - strand, within OKGIIK_16570 at 3642.316 kb on - strand, within OKGIIK_16570 at 3642.317 kb on + strand, within OKGIIK_16570 at 3642.317 kb on + strand, within OKGIIK_16570 at 3642.317 kb on + strand, within OKGIIK_16570 at 3642.317 kb on + strand, within OKGIIK_16570 at 3642.318 kb on - strand, within OKGIIK_16570 at 3642.318 kb on - strand, within OKGIIK_16570 at 3642.318 kb on - strand, within OKGIIK_16570 at 3642.318 kb on - strand, within OKGIIK_16570 at 3642.614 kb on + strand, within OKGIIK_16570 at 3642.614 kb on + strand, within OKGIIK_16570 at 3642.614 kb on + strand, within OKGIIK_16570 at 3642.614 kb on + strand, within OKGIIK_16570 at 3642.614 kb on + strand, within OKGIIK_16570 at 3642.614 kb on + strand, within OKGIIK_16570 at 3642.614 kb on + strand, within OKGIIK_16570 at 3642.615 kb on - strand, within OKGIIK_16570 at 3642.615 kb on - strand, within OKGIIK_16570 at 3643.027 kb on + strand, within dedA at 3643.027 kb on + strand, within dedA at 3643.027 kb on + strand, within dedA at 3643.027 kb on + strand, within dedA at 3643.027 kb on + strand, within dedA at 3643.028 kb on - strand, within dedA at 3643.028 kb on - strand, within dedA at 3643.028 kb on - strand, within dedA at 3643.028 kb on - strand, within dedA at 3643.028 kb on - strand, within dedA at 3643.028 kb on - strand, within dedA at 3643.028 kb on - strand, within dedA at 3643.028 kb on - strand, within dedA at 3643.076 kb on + strand, within dedA at 3643.076 kb on + strand, within dedA at 3643.076 kb on + strand, within dedA at 3643.076 kb on + strand, within dedA at 3643.076 kb on + strand, within dedA at 3643.076 kb on + strand, within dedA at 3643.076 kb on + strand, within dedA at 3643.077 kb on - strand, within dedA at 3643.077 kb on - strand, within dedA at 3643.077 kb on - strand, within dedA at 3643.077 kb on - strand, within dedA at 3643.077 kb on - strand, within dedA at 3643.169 kb on + strand, within dedA at 3643.169 kb on + strand, within dedA at 3643.170 kb on - strand, within dedA at 3643.170 kb on - strand, within dedA at 3643.170 kb on - strand, within dedA at 3643.170 kb on - strand, within dedA at 3643.170 kb on - strand, within dedA at 3643.170 kb on - strand, within dedA at 3643.170 kb on - strand, within dedA at 3643.226 kb on + strand, within dedA at 3643.227 kb on - strand, within dedA at 3643.256 kb on + strand, within dedA at 3643.257 kb on - strand, within dedA at 3643.257 kb on - strand, within dedA at 3643.257 kb on - strand, within dedA at 3643.313 kb on + strand, within dedA at 3643.313 kb on + strand, within dedA at 3643.313 kb on + strand, within dedA at 3643.314 kb on - strand, within dedA at 3643.397 kb on + strand, within dedA at 3643.496 kb on + strand at 3643.496 kb on + strand at 3643.496 kb on + strand at 3643.497 kb on - strand at 3643.497 kb on - strand at 3643.497 kb on - strand at 3643.497 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Cobalt chloride 512 uM remove 3,642,284 + OKGIIK_16570 0.37 -0.1 3,642,284 + OKGIIK_16570 0.37 -1.7 3,642,284 + OKGIIK_16570 0.37 -0.6 3,642,284 + OKGIIK_16570 0.37 +0.2 3,642,284 + OKGIIK_16570 0.37 -0.9 3,642,284 + OKGIIK_16570 0.37 -0.2 3,642,285 - OKGIIK_16570 0.37 -1.3 3,642,285 - OKGIIK_16570 0.37 -0.6 3,642,285 - OKGIIK_16570 0.37 +0.1 3,642,285 - OKGIIK_16570 0.37 +0.6 3,642,285 - OKGIIK_16570 0.37 -0.7 3,642,285 - OKGIIK_16570 0.37 -1.3 3,642,316 - OKGIIK_16570 0.40 -0.3 3,642,316 - OKGIIK_16570 0.40 +0.1 3,642,317 + OKGIIK_16570 0.41 +0.2 3,642,317 + OKGIIK_16570 0.41 +2.0 3,642,317 + OKGIIK_16570 0.41 -0.6 3,642,317 + OKGIIK_16570 0.41 -1.1 3,642,318 - OKGIIK_16570 0.41 -0.7 3,642,318 - OKGIIK_16570 0.41 -0.8 3,642,318 - OKGIIK_16570 0.41 +0.0 3,642,318 - OKGIIK_16570 0.41 +0.1 3,642,614 + OKGIIK_16570 0.70 +0.3 3,642,614 + OKGIIK_16570 0.70 +1.2 3,642,614 + OKGIIK_16570 0.70 -0.5 3,642,614 + OKGIIK_16570 0.70 +0.2 3,642,614 + OKGIIK_16570 0.70 +1.5 3,642,614 + OKGIIK_16570 0.70 -0.0 3,642,614 + OKGIIK_16570 0.70 +0.1 3,642,615 - OKGIIK_16570 0.70 -1.8 3,642,615 - OKGIIK_16570 0.70 -0.5 3,643,027 + dedA OKGIIK_16575 0.17 +1.3 3,643,027 + dedA OKGIIK_16575 0.17 +0.6 3,643,027 + dedA OKGIIK_16575 0.17 +0.4 3,643,027 + dedA OKGIIK_16575 0.17 +0.8 3,643,027 + dedA OKGIIK_16575 0.17 +2.3 3,643,028 - dedA OKGIIK_16575 0.17 -0.0 3,643,028 - dedA OKGIIK_16575 0.17 -1.5 3,643,028 - dedA OKGIIK_16575 0.17 +1.0 3,643,028 - dedA OKGIIK_16575 0.17 +0.1 3,643,028 - dedA OKGIIK_16575 0.17 -0.3 3,643,028 - dedA OKGIIK_16575 0.17 +0.1 3,643,028 - dedA OKGIIK_16575 0.17 +1.8 3,643,028 - dedA OKGIIK_16575 0.17 -1.0 3,643,076 + dedA OKGIIK_16575 0.25 -0.0 3,643,076 + dedA OKGIIK_16575 0.25 +0.9 3,643,076 + dedA OKGIIK_16575 0.25 -0.7 3,643,076 + dedA OKGIIK_16575 0.25 +1.3 3,643,076 + dedA OKGIIK_16575 0.25 -0.0 3,643,076 + dedA OKGIIK_16575 0.25 +0.7 3,643,076 + dedA OKGIIK_16575 0.25 -0.1 3,643,077 - dedA OKGIIK_16575 0.25 -0.5 3,643,077 - dedA OKGIIK_16575 0.25 -0.7 3,643,077 - dedA OKGIIK_16575 0.25 +0.6 3,643,077 - dedA OKGIIK_16575 0.25 +0.8 3,643,077 - dedA OKGIIK_16575 0.25 -0.0 3,643,169 + dedA OKGIIK_16575 0.40 -1.1 3,643,169 + dedA OKGIIK_16575 0.40 +0.3 3,643,170 - dedA OKGIIK_16575 0.40 -1.3 3,643,170 - dedA OKGIIK_16575 0.40 +0.9 3,643,170 - dedA OKGIIK_16575 0.40 -0.0 3,643,170 - dedA OKGIIK_16575 0.40 -1.3 3,643,170 - dedA OKGIIK_16575 0.40 +0.2 3,643,170 - dedA OKGIIK_16575 0.40 +0.8 3,643,170 - dedA OKGIIK_16575 0.40 -1.7 3,643,226 + dedA OKGIIK_16575 0.49 -2.3 3,643,227 - dedA OKGIIK_16575 0.49 -1.0 3,643,256 + dedA OKGIIK_16575 0.54 +0.6 3,643,257 - dedA OKGIIK_16575 0.54 +2.1 3,643,257 - dedA OKGIIK_16575 0.54 -1.5 3,643,257 - dedA OKGIIK_16575 0.54 -0.3 3,643,313 + dedA OKGIIK_16575 0.63 -1.1 3,643,313 + dedA OKGIIK_16575 0.63 -2.0 3,643,313 + dedA OKGIIK_16575 0.63 -0.3 3,643,314 - dedA OKGIIK_16575 0.63 +0.1 3,643,397 + dedA OKGIIK_16575 0.76 -0.5 3,643,496 + -0.8 3,643,496 + -2.8 3,643,496 + +1.3 3,643,497 - +0.3 3,643,497 - +0.3 3,643,497 - -0.6 3,643,497 - -0.2
Or see this region's nucleotide sequence