Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_16575

Experiment: R2A_PIPES with Cobalt chloride 512 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKGIIK_16570 and dedA are separated by 9 nucleotidesdedA and dnaG are separated by 130 nucleotides OKGIIK_16570: OKGIIK_16570 - Bile acid:sodium symporter, at 3,641,911 to 3,642,912 _16570 OKGIIK_16575: dedA - DedA family protein, at 3,642,922 to 3,643,542 dedA OKGIIK_16580: dnaG - DNA primase, at 3,643,673 to 3,645,460 dnaG Position (kb) 3642 3643 3644Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3642.284 kb on + strand, within OKGIIK_16570at 3642.284 kb on + strand, within OKGIIK_16570at 3642.284 kb on + strand, within OKGIIK_16570at 3642.284 kb on + strand, within OKGIIK_16570at 3642.284 kb on + strand, within OKGIIK_16570at 3642.284 kb on + strand, within OKGIIK_16570at 3642.285 kb on - strand, within OKGIIK_16570at 3642.285 kb on - strand, within OKGIIK_16570at 3642.285 kb on - strand, within OKGIIK_16570at 3642.285 kb on - strand, within OKGIIK_16570at 3642.285 kb on - strand, within OKGIIK_16570at 3642.285 kb on - strand, within OKGIIK_16570at 3642.316 kb on - strand, within OKGIIK_16570at 3642.316 kb on - strand, within OKGIIK_16570at 3642.317 kb on + strand, within OKGIIK_16570at 3642.317 kb on + strand, within OKGIIK_16570at 3642.317 kb on + strand, within OKGIIK_16570at 3642.317 kb on + strand, within OKGIIK_16570at 3642.318 kb on - strand, within OKGIIK_16570at 3642.318 kb on - strand, within OKGIIK_16570at 3642.318 kb on - strand, within OKGIIK_16570at 3642.318 kb on - strand, within OKGIIK_16570at 3642.614 kb on + strand, within OKGIIK_16570at 3642.614 kb on + strand, within OKGIIK_16570at 3642.614 kb on + strand, within OKGIIK_16570at 3642.614 kb on + strand, within OKGIIK_16570at 3642.614 kb on + strand, within OKGIIK_16570at 3642.614 kb on + strand, within OKGIIK_16570at 3642.614 kb on + strand, within OKGIIK_16570at 3642.615 kb on - strand, within OKGIIK_16570at 3642.615 kb on - strand, within OKGIIK_16570at 3643.027 kb on + strand, within dedAat 3643.027 kb on + strand, within dedAat 3643.027 kb on + strand, within dedAat 3643.027 kb on + strand, within dedAat 3643.027 kb on + strand, within dedAat 3643.028 kb on - strand, within dedAat 3643.028 kb on - strand, within dedAat 3643.028 kb on - strand, within dedAat 3643.028 kb on - strand, within dedAat 3643.028 kb on - strand, within dedAat 3643.028 kb on - strand, within dedAat 3643.028 kb on - strand, within dedAat 3643.028 kb on - strand, within dedAat 3643.076 kb on + strand, within dedAat 3643.076 kb on + strand, within dedAat 3643.076 kb on + strand, within dedAat 3643.076 kb on + strand, within dedAat 3643.076 kb on + strand, within dedAat 3643.076 kb on + strand, within dedAat 3643.076 kb on + strand, within dedAat 3643.077 kb on - strand, within dedAat 3643.077 kb on - strand, within dedAat 3643.077 kb on - strand, within dedAat 3643.077 kb on - strand, within dedAat 3643.077 kb on - strand, within dedAat 3643.169 kb on + strand, within dedAat 3643.169 kb on + strand, within dedAat 3643.170 kb on - strand, within dedAat 3643.170 kb on - strand, within dedAat 3643.170 kb on - strand, within dedAat 3643.170 kb on - strand, within dedAat 3643.170 kb on - strand, within dedAat 3643.170 kb on - strand, within dedAat 3643.170 kb on - strand, within dedAat 3643.226 kb on + strand, within dedAat 3643.227 kb on - strand, within dedAat 3643.256 kb on + strand, within dedAat 3643.257 kb on - strand, within dedAat 3643.257 kb on - strand, within dedAat 3643.257 kb on - strand, within dedAat 3643.313 kb on + strand, within dedAat 3643.313 kb on + strand, within dedAat 3643.313 kb on + strand, within dedAat 3643.314 kb on - strand, within dedAat 3643.397 kb on + strand, within dedAat 3643.496 kb on + strandat 3643.496 kb on + strandat 3643.496 kb on + strandat 3643.497 kb on - strandat 3643.497 kb on - strandat 3643.497 kb on - strandat 3643.497 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Cobalt chloride 512 uM
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3,642,284 + OKGIIK_16570 0.37 -0.1
3,642,284 + OKGIIK_16570 0.37 -1.7
3,642,284 + OKGIIK_16570 0.37 -0.6
3,642,284 + OKGIIK_16570 0.37 +0.2
3,642,284 + OKGIIK_16570 0.37 -0.9
3,642,284 + OKGIIK_16570 0.37 -0.2
3,642,285 - OKGIIK_16570 0.37 -1.3
3,642,285 - OKGIIK_16570 0.37 -0.6
3,642,285 - OKGIIK_16570 0.37 +0.1
3,642,285 - OKGIIK_16570 0.37 +0.6
3,642,285 - OKGIIK_16570 0.37 -0.7
3,642,285 - OKGIIK_16570 0.37 -1.3
3,642,316 - OKGIIK_16570 0.40 -0.3
3,642,316 - OKGIIK_16570 0.40 +0.1
3,642,317 + OKGIIK_16570 0.41 +0.2
3,642,317 + OKGIIK_16570 0.41 +2.0
3,642,317 + OKGIIK_16570 0.41 -0.6
3,642,317 + OKGIIK_16570 0.41 -1.1
3,642,318 - OKGIIK_16570 0.41 -0.7
3,642,318 - OKGIIK_16570 0.41 -0.8
3,642,318 - OKGIIK_16570 0.41 +0.0
3,642,318 - OKGIIK_16570 0.41 +0.1
3,642,614 + OKGIIK_16570 0.70 +0.3
3,642,614 + OKGIIK_16570 0.70 +1.2
3,642,614 + OKGIIK_16570 0.70 -0.5
3,642,614 + OKGIIK_16570 0.70 +0.2
3,642,614 + OKGIIK_16570 0.70 +1.5
3,642,614 + OKGIIK_16570 0.70 -0.0
3,642,614 + OKGIIK_16570 0.70 +0.1
3,642,615 - OKGIIK_16570 0.70 -1.8
3,642,615 - OKGIIK_16570 0.70 -0.5
3,643,027 + dedA OKGIIK_16575 0.17 +1.3
3,643,027 + dedA OKGIIK_16575 0.17 +0.6
3,643,027 + dedA OKGIIK_16575 0.17 +0.4
3,643,027 + dedA OKGIIK_16575 0.17 +0.8
3,643,027 + dedA OKGIIK_16575 0.17 +2.3
3,643,028 - dedA OKGIIK_16575 0.17 -0.0
3,643,028 - dedA OKGIIK_16575 0.17 -1.5
3,643,028 - dedA OKGIIK_16575 0.17 +1.0
3,643,028 - dedA OKGIIK_16575 0.17 +0.1
3,643,028 - dedA OKGIIK_16575 0.17 -0.3
3,643,028 - dedA OKGIIK_16575 0.17 +0.1
3,643,028 - dedA OKGIIK_16575 0.17 +1.8
3,643,028 - dedA OKGIIK_16575 0.17 -1.0
3,643,076 + dedA OKGIIK_16575 0.25 -0.0
3,643,076 + dedA OKGIIK_16575 0.25 +0.9
3,643,076 + dedA OKGIIK_16575 0.25 -0.7
3,643,076 + dedA OKGIIK_16575 0.25 +1.3
3,643,076 + dedA OKGIIK_16575 0.25 -0.0
3,643,076 + dedA OKGIIK_16575 0.25 +0.7
3,643,076 + dedA OKGIIK_16575 0.25 -0.1
3,643,077 - dedA OKGIIK_16575 0.25 -0.5
3,643,077 - dedA OKGIIK_16575 0.25 -0.7
3,643,077 - dedA OKGIIK_16575 0.25 +0.6
3,643,077 - dedA OKGIIK_16575 0.25 +0.8
3,643,077 - dedA OKGIIK_16575 0.25 -0.0
3,643,169 + dedA OKGIIK_16575 0.40 -1.1
3,643,169 + dedA OKGIIK_16575 0.40 +0.3
3,643,170 - dedA OKGIIK_16575 0.40 -1.3
3,643,170 - dedA OKGIIK_16575 0.40 +0.9
3,643,170 - dedA OKGIIK_16575 0.40 -0.0
3,643,170 - dedA OKGIIK_16575 0.40 -1.3
3,643,170 - dedA OKGIIK_16575 0.40 +0.2
3,643,170 - dedA OKGIIK_16575 0.40 +0.8
3,643,170 - dedA OKGIIK_16575 0.40 -1.7
3,643,226 + dedA OKGIIK_16575 0.49 -2.3
3,643,227 - dedA OKGIIK_16575 0.49 -1.0
3,643,256 + dedA OKGIIK_16575 0.54 +0.6
3,643,257 - dedA OKGIIK_16575 0.54 +2.1
3,643,257 - dedA OKGIIK_16575 0.54 -1.5
3,643,257 - dedA OKGIIK_16575 0.54 -0.3
3,643,313 + dedA OKGIIK_16575 0.63 -1.1
3,643,313 + dedA OKGIIK_16575 0.63 -2.0
3,643,313 + dedA OKGIIK_16575 0.63 -0.3
3,643,314 - dedA OKGIIK_16575 0.63 +0.1
3,643,397 + dedA OKGIIK_16575 0.76 -0.5
3,643,496 + -0.8
3,643,496 + -2.8
3,643,496 + +1.3
3,643,497 - +0.3
3,643,497 - +0.3
3,643,497 - -0.6
3,643,497 - -0.2

Or see this region's nucleotide sequence