Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_14685

Experiment: R2A_PIPES with Cobalt chloride 512 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKGIIK_14680 and OKGIIK_14685 are separated by 94 nucleotidesOKGIIK_14685 and OKGIIK_14690 are separated by 1 nucleotidesOKGIIK_14690 and OKGIIK_14695 are separated by 50 nucleotides OKGIIK_14680: OKGIIK_14680 - hypothetical protein, at 3,201,413 to 3,202,660 _14680 OKGIIK_14685: OKGIIK_14685 - Methyltransferase family protein, at 3,202,755 to 3,203,384 _14685 OKGIIK_14690: OKGIIK_14690 - Flavin-Reduct domain-containing protein, at 3,203,386 to 3,204,309 _14690 OKGIIK_14695: OKGIIK_14695 - Methyltransf-11 domain-containing protein, at 3,204,360 to 3,205,214 _14695 Position (kb) 3202 3203 3204Strain fitness (log2 ratio) -2 -1 0 1 2at 3201.755 kb on + strand, within OKGIIK_14680at 3201.755 kb on + strand, within OKGIIK_14680at 3201.755 kb on + strand, within OKGIIK_14680at 3201.755 kb on + strand, within OKGIIK_14680at 3201.755 kb on + strand, within OKGIIK_14680at 3201.755 kb on + strand, within OKGIIK_14680at 3201.756 kb on - strand, within OKGIIK_14680at 3201.756 kb on - strand, within OKGIIK_14680at 3201.756 kb on - strand, within OKGIIK_14680at 3201.908 kb on + strand, within OKGIIK_14680at 3201.909 kb on - strand, within OKGIIK_14680at 3201.959 kb on - strand, within OKGIIK_14680at 3202.424 kb on + strand, within OKGIIK_14680at 3202.425 kb on - strand, within OKGIIK_14680at 3202.586 kb on + strandat 3202.586 kb on + strandat 3202.586 kb on + strandat 3202.586 kb on + strandat 3202.586 kb on + strandat 3202.586 kb on + strandat 3202.586 kb on + strandat 3202.586 kb on + strandat 3202.586 kb on + strandat 3202.586 kb on + strandat 3202.587 kb on - strandat 3202.587 kb on - strandat 3202.587 kb on - strandat 3202.587 kb on - strandat 3202.587 kb on - strandat 3202.587 kb on - strandat 3202.587 kb on - strandat 3202.587 kb on - strandat 3202.587 kb on - strandat 3202.587 kb on - strandat 3202.587 kb on - strandat 3202.587 kb on - strandat 3202.587 kb on - strandat 3202.587 kb on - strandat 3202.587 kb on - strandat 3202.587 kb on - strandat 3202.587 kb on - strandat 3202.587 kb on - strandat 3202.587 kb on - strandat 3202.593 kb on + strandat 3202.594 kb on - strandat 3202.594 kb on - strandat 3202.594 kb on - strandat 3202.773 kb on + strandat 3202.773 kb on + strandat 3202.773 kb on + strandat 3202.773 kb on + strandat 3202.773 kb on + strandat 3202.774 kb on - strandat 3202.774 kb on - strandat 3202.774 kb on - strandat 3202.774 kb on - strandat 3202.774 kb on - strandat 3202.908 kb on + strand, within OKGIIK_14685at 3202.908 kb on + strand, within OKGIIK_14685at 3202.908 kb on + strand, within OKGIIK_14685at 3202.908 kb on + strand, within OKGIIK_14685at 3202.908 kb on + strand, within OKGIIK_14685at 3202.908 kb on + strand, within OKGIIK_14685at 3202.908 kb on + strand, within OKGIIK_14685at 3202.908 kb on + strand, within OKGIIK_14685at 3202.908 kb on + strand, within OKGIIK_14685at 3202.908 kb on + strand, within OKGIIK_14685at 3202.909 kb on - strand, within OKGIIK_14685at 3202.909 kb on - strand, within OKGIIK_14685at 3202.909 kb on - strand, within OKGIIK_14685at 3202.909 kb on - strand, within OKGIIK_14685at 3202.909 kb on - strand, within OKGIIK_14685at 3202.909 kb on - strand, within OKGIIK_14685at 3202.909 kb on - strand, within OKGIIK_14685at 3202.909 kb on - strand, within OKGIIK_14685at 3202.909 kb on - strand, within OKGIIK_14685at 3202.909 kb on - strand, within OKGIIK_14685at 3202.909 kb on - strand, within OKGIIK_14685at 3202.938 kb on + strand, within OKGIIK_14685at 3202.938 kb on + strand, within OKGIIK_14685at 3202.939 kb on - strand, within OKGIIK_14685at 3202.966 kb on - strand, within OKGIIK_14685at 3202.977 kb on + strand, within OKGIIK_14685at 3202.977 kb on + strand, within OKGIIK_14685at 3202.977 kb on + strand, within OKGIIK_14685at 3202.977 kb on + strand, within OKGIIK_14685at 3202.977 kb on + strand, within OKGIIK_14685at 3202.978 kb on - strand, within OKGIIK_14685at 3202.978 kb on - strand, within OKGIIK_14685at 3203.163 kb on + strand, within OKGIIK_14685at 3203.163 kb on + strand, within OKGIIK_14685at 3203.163 kb on + strand, within OKGIIK_14685at 3203.163 kb on + strand, within OKGIIK_14685at 3203.163 kb on + strand, within OKGIIK_14685at 3203.164 kb on - strand, within OKGIIK_14685at 3203.164 kb on - strand, within OKGIIK_14685at 3203.164 kb on - strand, within OKGIIK_14685at 3203.166 kb on + strand, within OKGIIK_14685at 3203.166 kb on + strand, within OKGIIK_14685at 3203.166 kb on + strand, within OKGIIK_14685at 3203.166 kb on + strand, within OKGIIK_14685at 3203.167 kb on - strand, within OKGIIK_14685at 3203.167 kb on - strand, within OKGIIK_14685at 3203.167 kb on - strand, within OKGIIK_14685at 3203.232 kb on + strand, within OKGIIK_14685at 3203.233 kb on - strand, within OKGIIK_14685at 3203.302 kb on - strand, within OKGIIK_14685at 3203.302 kb on - strand, within OKGIIK_14685at 3203.355 kb on + strandat 3203.355 kb on + strandat 3203.356 kb on - strandat 3203.356 kb on - strandat 3203.356 kb on - strandat 3203.402 kb on + strandat 3203.414 kb on + strandat 3203.414 kb on + strandat 3203.414 kb on + strandat 3203.415 kb on - strandat 3203.520 kb on + strand, within OKGIIK_14690at 3203.520 kb on + strand, within OKGIIK_14690at 3203.521 kb on - strand, within OKGIIK_14690at 3203.521 kb on - strand, within OKGIIK_14690at 3203.521 kb on - strand, within OKGIIK_14690at 3203.590 kb on + strand, within OKGIIK_14690at 3203.591 kb on - strand, within OKGIIK_14690at 3203.591 kb on - strand, within OKGIIK_14690at 3203.591 kb on - strand, within OKGIIK_14690at 3203.646 kb on - strand, within OKGIIK_14690at 3203.827 kb on + strand, within OKGIIK_14690at 3203.827 kb on + strand, within OKGIIK_14690at 3203.963 kb on + strand, within OKGIIK_14690at 3204.031 kb on + strand, within OKGIIK_14690at 3204.031 kb on + strand, within OKGIIK_14690at 3204.031 kb on + strand, within OKGIIK_14690at 3204.031 kb on + strand, within OKGIIK_14690at 3204.032 kb on - strand, within OKGIIK_14690at 3204.032 kb on - strand, within OKGIIK_14690at 3204.032 kb on - strand, within OKGIIK_14690at 3204.032 kb on - strand, within OKGIIK_14690at 3204.204 kb on + strand, within OKGIIK_14690at 3204.271 kb on + strandat 3204.271 kb on + strandat 3204.272 kb on - strandat 3204.298 kb on - strandat 3204.307 kb on + strandat 3204.308 kb on - strandat 3204.308 kb on - strandat 3204.351 kb on + strandat 3204.351 kb on + strandat 3204.351 kb on + strandat 3204.351 kb on + strandat 3204.352 kb on - strandat 3204.352 kb on - strandat 3204.352 kb on - strandat 3204.352 kb on - strandat 3204.361 kb on + strandat 3204.361 kb on + strandat 3204.362 kb on - strandat 3204.362 kb on - strandat 3204.362 kb on - strandat 3204.362 kb on - strandat 3204.362 kb on - strandat 3204.362 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Cobalt chloride 512 uM
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3,201,755 + OKGIIK_14680 0.27 -0.5
3,201,755 + OKGIIK_14680 0.27 -1.2
3,201,755 + OKGIIK_14680 0.27 -0.6
3,201,755 + OKGIIK_14680 0.27 -1.1
3,201,755 + OKGIIK_14680 0.27 +0.5
3,201,755 + OKGIIK_14680 0.27 +0.7
3,201,756 - OKGIIK_14680 0.27 -0.5
3,201,756 - OKGIIK_14680 0.27 -2.5
3,201,756 - OKGIIK_14680 0.27 +0.3
3,201,908 + OKGIIK_14680 0.40 -0.4
3,201,909 - OKGIIK_14680 0.40 +0.8
3,201,959 - OKGIIK_14680 0.44 +0.3
3,202,424 + OKGIIK_14680 0.81 -0.2
3,202,425 - OKGIIK_14680 0.81 -0.5
3,202,586 + +0.5
3,202,586 + -0.3
3,202,586 + +2.3
3,202,586 + +1.0
3,202,586 + -1.4
3,202,586 + +0.4
3,202,586 + +1.3
3,202,586 + -0.1
3,202,586 + -0.2
3,202,586 + +0.8
3,202,587 - -0.3
3,202,587 - -0.6
3,202,587 - +0.5
3,202,587 - +0.1
3,202,587 - -0.1
3,202,587 - -0.1
3,202,587 - +1.3
3,202,587 - +1.1
3,202,587 - -0.1
3,202,587 - +1.1
3,202,587 - -1.2
3,202,587 - +0.5
3,202,587 - +0.4
3,202,587 - +1.0
3,202,587 - +0.3
3,202,587 - +0.3
3,202,587 - -0.1
3,202,587 - +0.3
3,202,587 - +0.6
3,202,593 + -0.9
3,202,594 - +0.3
3,202,594 - +0.3
3,202,594 - -0.6
3,202,773 + +0.3
3,202,773 + -0.7
3,202,773 + -0.2
3,202,773 + +0.3
3,202,773 + -2.2
3,202,774 - +0.3
3,202,774 - -0.1
3,202,774 - +0.3
3,202,774 - -0.9
3,202,774 - +0.5
3,202,908 + OKGIIK_14685 0.24 -0.6
3,202,908 + OKGIIK_14685 0.24 -1.1
3,202,908 + OKGIIK_14685 0.24 +0.6
3,202,908 + OKGIIK_14685 0.24 +0.4
3,202,908 + OKGIIK_14685 0.24 -0.6
3,202,908 + OKGIIK_14685 0.24 +0.3
3,202,908 + OKGIIK_14685 0.24 -0.2
3,202,908 + OKGIIK_14685 0.24 +1.0
3,202,908 + OKGIIK_14685 0.24 -0.9
3,202,908 + OKGIIK_14685 0.24 +0.6
3,202,909 - OKGIIK_14685 0.24 +0.2
3,202,909 - OKGIIK_14685 0.24 +0.6
3,202,909 - OKGIIK_14685 0.24 +0.1
3,202,909 - OKGIIK_14685 0.24 -0.1
3,202,909 - OKGIIK_14685 0.24 +0.7
3,202,909 - OKGIIK_14685 0.24 -1.6
3,202,909 - OKGIIK_14685 0.24 -0.7
3,202,909 - OKGIIK_14685 0.24 -0.5
3,202,909 - OKGIIK_14685 0.24 -0.3
3,202,909 - OKGIIK_14685 0.24 +0.7
3,202,909 - OKGIIK_14685 0.24 -0.7
3,202,938 + OKGIIK_14685 0.29 -2.4
3,202,938 + OKGIIK_14685 0.29 +0.2
3,202,939 - OKGIIK_14685 0.29 -0.1
3,202,966 - OKGIIK_14685 0.33 +0.0
3,202,977 + OKGIIK_14685 0.35 +1.4
3,202,977 + OKGIIK_14685 0.35 +0.3
3,202,977 + OKGIIK_14685 0.35 -0.0
3,202,977 + OKGIIK_14685 0.35 +0.5
3,202,977 + OKGIIK_14685 0.35 -0.1
3,202,978 - OKGIIK_14685 0.35 -0.1
3,202,978 - OKGIIK_14685 0.35 +2.1
3,203,163 + OKGIIK_14685 0.65 -0.1
3,203,163 + OKGIIK_14685 0.65 +0.7
3,203,163 + OKGIIK_14685 0.65 -1.3
3,203,163 + OKGIIK_14685 0.65 -0.6
3,203,163 + OKGIIK_14685 0.65 -2.2
3,203,164 - OKGIIK_14685 0.65 +1.9
3,203,164 - OKGIIK_14685 0.65 +0.4
3,203,164 - OKGIIK_14685 0.65 -0.3
3,203,166 + OKGIIK_14685 0.65 -0.3
3,203,166 + OKGIIK_14685 0.65 -0.2
3,203,166 + OKGIIK_14685 0.65 +0.1
3,203,166 + OKGIIK_14685 0.65 -0.3
3,203,167 - OKGIIK_14685 0.65 +0.1
3,203,167 - OKGIIK_14685 0.65 +1.5
3,203,167 - OKGIIK_14685 0.65 -1.7
3,203,232 + OKGIIK_14685 0.76 -1.1
3,203,233 - OKGIIK_14685 0.76 -2.3
3,203,302 - OKGIIK_14685 0.87 -0.1
3,203,302 - OKGIIK_14685 0.87 +0.6
3,203,355 + -0.2
3,203,355 + +0.0
3,203,356 - +0.5
3,203,356 - -0.7
3,203,356 - -0.8
3,203,402 + +0.3
3,203,414 + -0.2
3,203,414 + -1.1
3,203,414 + +0.3
3,203,415 - +0.8
3,203,520 + OKGIIK_14690 0.15 -0.6
3,203,520 + OKGIIK_14690 0.15 -2.3
3,203,521 - OKGIIK_14690 0.15 +0.6
3,203,521 - OKGIIK_14690 0.15 -0.3
3,203,521 - OKGIIK_14690 0.15 -0.6
3,203,590 + OKGIIK_14690 0.22 +1.0
3,203,591 - OKGIIK_14690 0.22 +2.1
3,203,591 - OKGIIK_14690 0.22 +0.1
3,203,591 - OKGIIK_14690 0.22 +1.1
3,203,646 - OKGIIK_14690 0.28 -1.2
3,203,827 + OKGIIK_14690 0.48 +1.8
3,203,827 + OKGIIK_14690 0.48 -0.9
3,203,963 + OKGIIK_14690 0.62 -0.9
3,204,031 + OKGIIK_14690 0.70 +0.1
3,204,031 + OKGIIK_14690 0.70 +1.0
3,204,031 + OKGIIK_14690 0.70 +0.3
3,204,031 + OKGIIK_14690 0.70 -0.1
3,204,032 - OKGIIK_14690 0.70 -1.1
3,204,032 - OKGIIK_14690 0.70 -0.7
3,204,032 - OKGIIK_14690 0.70 -0.6
3,204,032 - OKGIIK_14690 0.70 -0.0
3,204,204 + OKGIIK_14690 0.89 +0.4
3,204,271 + -0.4
3,204,271 + -0.4
3,204,272 - +0.9
3,204,298 - +0.0
3,204,307 + -1.4
3,204,308 - -0.3
3,204,308 - -0.9
3,204,351 + +0.8
3,204,351 + -0.2
3,204,351 + -0.3
3,204,351 + +1.4
3,204,352 - +1.1
3,204,352 - -0.7
3,204,352 - -1.9
3,204,352 - +1.7
3,204,361 + -0.7
3,204,361 + +0.3
3,204,362 - +1.8
3,204,362 - +0.3
3,204,362 - +0.8
3,204,362 - -1.6
3,204,362 - -0.9
3,204,362 - +0.2

Or see this region's nucleotide sequence