Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_07705

Experiment: R2A_PIPES with Cobalt chloride 512 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntxseA and OKGIIK_07705 are separated by 67 nucleotidesOKGIIK_07705 and adhE are separated by 13 nucleotides OKGIIK_07700: xseA - exodeoxyribonuclease VII large subunit, at 1,702,868 to 1,704,217 xseA OKGIIK_07705: OKGIIK_07705 - acetolactate synthase large subunit, at 1,704,285 to 1,705,928 _07705 OKGIIK_07710: adhE - aldehyde dehydrogenase, at 1,705,942 to 1,707,372 adhE Position (kb) 1704 1705 1706Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1703.385 kb on + strand, within xseAat 1703.385 kb on + strand, within xseAat 1703.385 kb on + strand, within xseAat 1703.386 kb on - strand, within xseAat 1703.406 kb on + strand, within xseAat 1703.406 kb on + strand, within xseAat 1703.407 kb on - strand, within xseAat 1703.407 kb on - strand, within xseAat 1703.407 kb on - strand, within xseAat 1703.471 kb on + strand, within xseAat 1703.472 kb on - strand, within xseAat 1704.095 kb on + strandat 1704.127 kb on - strandat 1704.127 kb on - strandat 1704.127 kb on - strandat 1704.535 kb on - strand, within OKGIIK_07705at 1704.654 kb on + strand, within OKGIIK_07705at 1704.654 kb on + strand, within OKGIIK_07705at 1704.654 kb on + strand, within OKGIIK_07705at 1704.654 kb on + strand, within OKGIIK_07705at 1704.654 kb on + strand, within OKGIIK_07705at 1704.655 kb on - strand, within OKGIIK_07705at 1704.655 kb on - strand, within OKGIIK_07705at 1704.655 kb on - strand, within OKGIIK_07705at 1704.655 kb on - strand, within OKGIIK_07705at 1704.655 kb on - strand, within OKGIIK_07705at 1704.655 kb on - strand, within OKGIIK_07705at 1704.655 kb on - strand, within OKGIIK_07705at 1704.655 kb on - strand, within OKGIIK_07705at 1704.655 kb on - strand, within OKGIIK_07705at 1704.921 kb on - strand, within OKGIIK_07705at 1704.921 kb on - strand, within OKGIIK_07705at 1705.184 kb on + strand, within OKGIIK_07705at 1705.191 kb on + strand, within OKGIIK_07705at 1705.191 kb on + strand, within OKGIIK_07705at 1705.191 kb on + strand, within OKGIIK_07705at 1705.191 kb on + strand, within OKGIIK_07705at 1705.191 kb on + strand, within OKGIIK_07705at 1705.191 kb on + strand, within OKGIIK_07705at 1705.191 kb on + strand, within OKGIIK_07705at 1705.191 kb on + strand, within OKGIIK_07705at 1705.191 kb on + strand, within OKGIIK_07705at 1705.191 kb on + strand, within OKGIIK_07705at 1705.192 kb on - strand, within OKGIIK_07705at 1705.192 kb on - strand, within OKGIIK_07705at 1705.192 kb on - strand, within OKGIIK_07705at 1705.192 kb on - strand, within OKGIIK_07705at 1705.192 kb on - strand, within OKGIIK_07705at 1705.192 kb on - strand, within OKGIIK_07705at 1705.192 kb on - strand, within OKGIIK_07705at 1705.192 kb on - strand, within OKGIIK_07705at 1705.192 kb on - strand, within OKGIIK_07705at 1705.192 kb on - strand, within OKGIIK_07705at 1705.229 kb on + strand, within OKGIIK_07705at 1705.230 kb on - strand, within OKGIIK_07705at 1705.431 kb on + strand, within OKGIIK_07705at 1705.431 kb on + strand, within OKGIIK_07705at 1705.431 kb on + strand, within OKGIIK_07705at 1705.431 kb on + strand, within OKGIIK_07705at 1705.431 kb on + strand, within OKGIIK_07705at 1705.431 kb on + strand, within OKGIIK_07705at 1705.431 kb on + strand, within OKGIIK_07705at 1705.431 kb on + strand, within OKGIIK_07705at 1705.431 kb on + strand, within OKGIIK_07705at 1705.431 kb on + strand, within OKGIIK_07705at 1705.431 kb on + strand, within OKGIIK_07705at 1705.431 kb on + strand, within OKGIIK_07705at 1705.431 kb on + strand, within OKGIIK_07705at 1705.431 kb on + strand, within OKGIIK_07705at 1705.431 kb on + strand, within OKGIIK_07705at 1705.431 kb on + strand, within OKGIIK_07705at 1705.431 kb on + strand, within OKGIIK_07705at 1705.431 kb on + strand, within OKGIIK_07705at 1705.432 kb on - strand, within OKGIIK_07705at 1705.432 kb on - strand, within OKGIIK_07705at 1705.432 kb on - strand, within OKGIIK_07705at 1705.432 kb on - strand, within OKGIIK_07705at 1705.432 kb on - strand, within OKGIIK_07705at 1705.432 kb on - strand, within OKGIIK_07705at 1705.432 kb on - strand, within OKGIIK_07705at 1705.432 kb on - strand, within OKGIIK_07705at 1705.432 kb on - strand, within OKGIIK_07705at 1705.432 kb on - strand, within OKGIIK_07705at 1705.432 kb on - strand, within OKGIIK_07705at 1705.432 kb on - strand, within OKGIIK_07705at 1705.432 kb on - strand, within OKGIIK_07705at 1705.432 kb on - strand, within OKGIIK_07705at 1705.432 kb on - strand, within OKGIIK_07705at 1705.432 kb on - strand, within OKGIIK_07705at 1705.443 kb on + strand, within OKGIIK_07705at 1705.443 kb on + strand, within OKGIIK_07705at 1705.444 kb on - strand, within OKGIIK_07705at 1705.444 kb on - strand, within OKGIIK_07705at 1705.452 kb on + strand, within OKGIIK_07705at 1705.452 kb on + strand, within OKGIIK_07705at 1705.453 kb on - strand, within OKGIIK_07705at 1705.453 kb on - strand, within OKGIIK_07705at 1705.453 kb on - strand, within OKGIIK_07705at 1705.456 kb on - strand, within OKGIIK_07705at 1705.548 kb on + strand, within OKGIIK_07705at 1705.548 kb on + strand, within OKGIIK_07705at 1705.549 kb on - strand, within OKGIIK_07705at 1705.549 kb on - strand, within OKGIIK_07705at 1705.672 kb on - strand, within OKGIIK_07705at 1705.707 kb on + strand, within OKGIIK_07705at 1705.707 kb on + strand, within OKGIIK_07705at 1705.708 kb on - strand, within OKGIIK_07705at 1705.708 kb on - strand, within OKGIIK_07705at 1705.708 kb on - strand, within OKGIIK_07705at 1705.708 kb on - strand, within OKGIIK_07705at 1705.717 kb on - strand, within OKGIIK_07705at 1705.827 kb on + strandat 1705.827 kb on + strandat 1705.827 kb on + strandat 1705.828 kb on - strandat 1705.869 kb on + strandat 1705.870 kb on - strandat 1705.870 kb on - strandat 1705.957 kb on + strandat 1705.957 kb on + strandat 1705.957 kb on + strandat 1705.958 kb on - strandat 1705.963 kb on + strandat 1705.964 kb on - strandat 1705.964 kb on - strandat 1705.966 kb on + strandat 1705.966 kb on + strandat 1705.966 kb on + strandat 1705.966 kb on + strandat 1705.966 kb on + strandat 1705.967 kb on - strandat 1705.967 kb on - strandat 1705.967 kb on - strandat 1706.344 kb on + strand, within adhEat 1706.345 kb on - strand, within adhEat 1706.773 kb on + strand, within adhEat 1706.773 kb on + strand, within adhEat 1706.773 kb on + strand, within adhEat 1706.774 kb on - strand, within adhEat 1706.774 kb on - strand, within adhEat 1706.774 kb on - strand, within adhEat 1706.774 kb on - strand, within adhEat 1706.774 kb on - strand, within adhEat 1706.774 kb on - strand, within adhEat 1706.812 kb on + strand, within adhEat 1706.812 kb on + strand, within adhEat 1706.812 kb on + strand, within adhEat 1706.812 kb on + strand, within adhEat 1706.812 kb on + strand, within adhEat 1706.812 kb on + strand, within adhEat 1706.812 kb on + strand, within adhEat 1706.812 kb on + strand, within adhEat 1706.812 kb on + strand, within adhEat 1706.812 kb on + strand, within adhEat 1706.813 kb on - strand, within adhEat 1706.813 kb on - strand, within adhEat 1706.813 kb on - strand, within adhEat 1706.813 kb on - strand, within adhEat 1706.813 kb on - strand, within adhEat 1706.813 kb on - strand, within adhEat 1706.813 kb on - strand, within adhEat 1706.813 kb on - strand, within adhEat 1706.813 kb on - strand, within adhEat 1706.813 kb on - strand, within adhEat 1706.813 kb on - strand, within adhEat 1706.813 kb on - strand, within adhEat 1706.813 kb on - strand, within adhEat 1706.830 kb on + strand, within adhEat 1706.830 kb on + strand, within adhEat 1706.830 kb on + strand, within adhEat 1706.831 kb on - strand, within adhEat 1706.831 kb on - strand, within adhEat 1706.831 kb on - strand, within adhE

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Cobalt chloride 512 uM
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1,703,385 + xseA OKGIIK_07700 0.38 -1.2
1,703,385 + xseA OKGIIK_07700 0.38 -0.2
1,703,385 + xseA OKGIIK_07700 0.38 -0.7
1,703,386 - xseA OKGIIK_07700 0.38 -1.2
1,703,406 + xseA OKGIIK_07700 0.40 +0.1
1,703,406 + xseA OKGIIK_07700 0.40 -0.0
1,703,407 - xseA OKGIIK_07700 0.40 +0.2
1,703,407 - xseA OKGIIK_07700 0.40 +0.6
1,703,407 - xseA OKGIIK_07700 0.40 +0.6
1,703,471 + xseA OKGIIK_07700 0.45 -1.2
1,703,472 - xseA OKGIIK_07700 0.45 +1.0
1,704,095 + -1.1
1,704,127 - -0.1
1,704,127 - +0.7
1,704,127 - -0.9
1,704,535 - OKGIIK_07705 0.15 +0.7
1,704,654 + OKGIIK_07705 0.22 -0.2
1,704,654 + OKGIIK_07705 0.22 -1.1
1,704,654 + OKGIIK_07705 0.22 +1.1
1,704,654 + OKGIIK_07705 0.22 -0.8
1,704,654 + OKGIIK_07705 0.22 -0.2
1,704,655 - OKGIIK_07705 0.23 +0.8
1,704,655 - OKGIIK_07705 0.23 -0.1
1,704,655 - OKGIIK_07705 0.23 -0.1
1,704,655 - OKGIIK_07705 0.23 -0.7
1,704,655 - OKGIIK_07705 0.23 -1.2
1,704,655 - OKGIIK_07705 0.23 +1.3
1,704,655 - OKGIIK_07705 0.23 +0.7
1,704,655 - OKGIIK_07705 0.23 -0.4
1,704,655 - OKGIIK_07705 0.23 -0.6
1,704,921 - OKGIIK_07705 0.39 -0.2
1,704,921 - OKGIIK_07705 0.39 +0.1
1,705,184 + OKGIIK_07705 0.55 +0.4
1,705,191 + OKGIIK_07705 0.55 -2.1
1,705,191 + OKGIIK_07705 0.55 +0.4
1,705,191 + OKGIIK_07705 0.55 -0.8
1,705,191 + OKGIIK_07705 0.55 +0.3
1,705,191 + OKGIIK_07705 0.55 -0.2
1,705,191 + OKGIIK_07705 0.55 -2.5
1,705,191 + OKGIIK_07705 0.55 -0.6
1,705,191 + OKGIIK_07705 0.55 -3.2
1,705,191 + OKGIIK_07705 0.55 -1.9
1,705,191 + OKGIIK_07705 0.55 +0.4
1,705,192 - OKGIIK_07705 0.55 +2.2
1,705,192 - OKGIIK_07705 0.55 +0.7
1,705,192 - OKGIIK_07705 0.55 -0.3
1,705,192 - OKGIIK_07705 0.55 -1.1
1,705,192 - OKGIIK_07705 0.55 +1.0
1,705,192 - OKGIIK_07705 0.55 -0.0
1,705,192 - OKGIIK_07705 0.55 -1.9
1,705,192 - OKGIIK_07705 0.55 -0.2
1,705,192 - OKGIIK_07705 0.55 -1.0
1,705,192 - OKGIIK_07705 0.55 -0.5
1,705,229 + OKGIIK_07705 0.57 +0.1
1,705,230 - OKGIIK_07705 0.57 -0.4
1,705,431 + OKGIIK_07705 0.70 -0.6
1,705,431 + OKGIIK_07705 0.70 -0.2
1,705,431 + OKGIIK_07705 0.70 -0.4
1,705,431 + OKGIIK_07705 0.70 -0.2
1,705,431 + OKGIIK_07705 0.70 -0.3
1,705,431 + OKGIIK_07705 0.70 -0.4
1,705,431 + OKGIIK_07705 0.70 -0.1
1,705,431 + OKGIIK_07705 0.70 -0.4
1,705,431 + OKGIIK_07705 0.70 -0.2
1,705,431 + OKGIIK_07705 0.70 -1.1
1,705,431 + OKGIIK_07705 0.70 +0.4
1,705,431 + OKGIIK_07705 0.70 -0.6
1,705,431 + OKGIIK_07705 0.70 -0.3
1,705,431 + OKGIIK_07705 0.70 +1.1
1,705,431 + OKGIIK_07705 0.70 +0.3
1,705,431 + OKGIIK_07705 0.70 -0.4
1,705,431 + OKGIIK_07705 0.70 -1.9
1,705,431 + OKGIIK_07705 0.70 +0.4
1,705,432 - OKGIIK_07705 0.70 +0.6
1,705,432 - OKGIIK_07705 0.70 -0.9
1,705,432 - OKGIIK_07705 0.70 +1.2
1,705,432 - OKGIIK_07705 0.70 +0.7
1,705,432 - OKGIIK_07705 0.70 +0.4
1,705,432 - OKGIIK_07705 0.70 -1.2
1,705,432 - OKGIIK_07705 0.70 -0.9
1,705,432 - OKGIIK_07705 0.70 -0.6
1,705,432 - OKGIIK_07705 0.70 -0.6
1,705,432 - OKGIIK_07705 0.70 -0.4
1,705,432 - OKGIIK_07705 0.70 +0.7
1,705,432 - OKGIIK_07705 0.70 +0.1
1,705,432 - OKGIIK_07705 0.70 -1.1
1,705,432 - OKGIIK_07705 0.70 +0.4
1,705,432 - OKGIIK_07705 0.70 -1.2
1,705,432 - OKGIIK_07705 0.70 +1.5
1,705,443 + OKGIIK_07705 0.70 +0.5
1,705,443 + OKGIIK_07705 0.70 +0.7
1,705,444 - OKGIIK_07705 0.70 -0.8
1,705,444 - OKGIIK_07705 0.70 -0.1
1,705,452 + OKGIIK_07705 0.71 +0.4
1,705,452 + OKGIIK_07705 0.71 -0.0
1,705,453 - OKGIIK_07705 0.71 -0.9
1,705,453 - OKGIIK_07705 0.71 -0.6
1,705,453 - OKGIIK_07705 0.71 +1.0
1,705,456 - OKGIIK_07705 0.71 +0.8
1,705,548 + OKGIIK_07705 0.77 -0.4
1,705,548 + OKGIIK_07705 0.77 +0.2
1,705,549 - OKGIIK_07705 0.77 -0.2
1,705,549 - OKGIIK_07705 0.77 -1.2
1,705,672 - OKGIIK_07705 0.84 -0.1
1,705,707 + OKGIIK_07705 0.86 -1.3
1,705,707 + OKGIIK_07705 0.86 -1.6
1,705,708 - OKGIIK_07705 0.87 -0.2
1,705,708 - OKGIIK_07705 0.87 -0.6
1,705,708 - OKGIIK_07705 0.87 -0.6
1,705,708 - OKGIIK_07705 0.87 +1.4
1,705,717 - OKGIIK_07705 0.87 +0.5
1,705,827 + -1.6
1,705,827 + -0.4
1,705,827 + -0.9
1,705,828 - -0.5
1,705,869 + -0.0
1,705,870 - -0.1
1,705,870 - -2.0
1,705,957 + +0.5
1,705,957 + +0.4
1,705,957 + -0.1
1,705,958 - +0.6
1,705,963 + +0.6
1,705,964 - +0.1
1,705,964 - +0.2
1,705,966 + -1.1
1,705,966 + -0.7
1,705,966 + -2.1
1,705,966 + -0.2
1,705,966 + -0.5
1,705,967 - +0.2
1,705,967 - -0.5
1,705,967 - -0.9
1,706,344 + adhE OKGIIK_07710 0.28 +0.2
1,706,345 - adhE OKGIIK_07710 0.28 -1.6
1,706,773 + adhE OKGIIK_07710 0.58 +1.1
1,706,773 + adhE OKGIIK_07710 0.58 -0.4
1,706,773 + adhE OKGIIK_07710 0.58 +0.0
1,706,774 - adhE OKGIIK_07710 0.58 +0.2
1,706,774 - adhE OKGIIK_07710 0.58 +0.1
1,706,774 - adhE OKGIIK_07710 0.58 +2.2
1,706,774 - adhE OKGIIK_07710 0.58 +1.2
1,706,774 - adhE OKGIIK_07710 0.58 -0.4
1,706,774 - adhE OKGIIK_07710 0.58 +0.4
1,706,812 + adhE OKGIIK_07710 0.61 +0.5
1,706,812 + adhE OKGIIK_07710 0.61 -0.3
1,706,812 + adhE OKGIIK_07710 0.61 +0.9
1,706,812 + adhE OKGIIK_07710 0.61 -1.6
1,706,812 + adhE OKGIIK_07710 0.61 +0.6
1,706,812 + adhE OKGIIK_07710 0.61 -0.6
1,706,812 + adhE OKGIIK_07710 0.61 -0.2
1,706,812 + adhE OKGIIK_07710 0.61 -0.6
1,706,812 + adhE OKGIIK_07710 0.61 -0.4
1,706,812 + adhE OKGIIK_07710 0.61 -1.2
1,706,813 - adhE OKGIIK_07710 0.61 -0.7
1,706,813 - adhE OKGIIK_07710 0.61 -1.6
1,706,813 - adhE OKGIIK_07710 0.61 -0.6
1,706,813 - adhE OKGIIK_07710 0.61 +0.4
1,706,813 - adhE OKGIIK_07710 0.61 -1.1
1,706,813 - adhE OKGIIK_07710 0.61 -0.5
1,706,813 - adhE OKGIIK_07710 0.61 -0.2
1,706,813 - adhE OKGIIK_07710 0.61 -0.5
1,706,813 - adhE OKGIIK_07710 0.61 -0.9
1,706,813 - adhE OKGIIK_07710 0.61 +0.4
1,706,813 - adhE OKGIIK_07710 0.61 -1.6
1,706,813 - adhE OKGIIK_07710 0.61 -0.2
1,706,813 - adhE OKGIIK_07710 0.61 +0.2
1,706,830 + adhE OKGIIK_07710 0.62 -0.2
1,706,830 + adhE OKGIIK_07710 0.62 -0.4
1,706,830 + adhE OKGIIK_07710 0.62 -0.4
1,706,831 - adhE OKGIIK_07710 0.62 -1.1
1,706,831 - adhE OKGIIK_07710 0.62 +0.1
1,706,831 - adhE OKGIIK_07710 0.62 -0.6

Or see this region's nucleotide sequence