Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_01625

Experiment: R2A_PIPES with Cobalt chloride 512 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKGIIK_01615 and OKGIIK_01620 are separated by 84 nucleotidesOKGIIK_01620 and OKGIIK_01625 are separated by 160 nucleotidesOKGIIK_01625 and OKGIIK_01630 overlap by 4 nucleotides OKGIIK_01615: OKGIIK_01615 - Single-stranded DNA-binding protein, at 366,319 to 366,819 _01615 OKGIIK_01620: OKGIIK_01620 - AraC family transcriptional regulator, at 366,904 to 367,614 _01620 OKGIIK_01625: OKGIIK_01625 - Hydroxyproline-2-epimerase, at 367,775 to 368,716 _01625 OKGIIK_01630: OKGIIK_01630 - D-amino-acid oxidase, at 368,713 to 369,825 _01630 Position (kb) 367 368 369Strain fitness (log2 ratio) -2 -1 0 1 2at 366.905 kb on + strandat 366.905 kb on + strandat 366.905 kb on + strandat 366.905 kb on + strandat 366.905 kb on + strandat 366.905 kb on + strandat 366.905 kb on + strandat 366.905 kb on + strandat 366.905 kb on + strandat 366.905 kb on + strandat 366.905 kb on + strandat 366.905 kb on + strandat 367.185 kb on - strand, within OKGIIK_01620at 367.185 kb on - strand, within OKGIIK_01620at 367.199 kb on + strand, within OKGIIK_01620at 367.199 kb on + strand, within OKGIIK_01620at 367.199 kb on + strand, within OKGIIK_01620at 367.199 kb on + strand, within OKGIIK_01620at 367.199 kb on + strand, within OKGIIK_01620at 367.199 kb on + strand, within OKGIIK_01620at 367.199 kb on + strand, within OKGIIK_01620at 367.199 kb on + strand, within OKGIIK_01620at 367.199 kb on + strand, within OKGIIK_01620at 367.199 kb on + strand, within OKGIIK_01620at 367.199 kb on + strand, within OKGIIK_01620at 367.199 kb on + strand, within OKGIIK_01620at 367.199 kb on + strand, within OKGIIK_01620at 367.200 kb on - strand, within OKGIIK_01620at 367.200 kb on - strand, within OKGIIK_01620at 367.200 kb on - strand, within OKGIIK_01620at 367.200 kb on - strand, within OKGIIK_01620at 367.200 kb on - strand, within OKGIIK_01620at 367.200 kb on - strand, within OKGIIK_01620at 367.200 kb on - strand, within OKGIIK_01620at 367.200 kb on - strand, within OKGIIK_01620at 367.200 kb on - strand, within OKGIIK_01620at 367.200 kb on - strand, within OKGIIK_01620at 367.200 kb on - strand, within OKGIIK_01620at 367.200 kb on - strand, within OKGIIK_01620at 367.200 kb on - strand, within OKGIIK_01620at 367.200 kb on - strand, within OKGIIK_01620at 367.200 kb on - strand, within OKGIIK_01620at 367.200 kb on - strand, within OKGIIK_01620at 367.200 kb on - strand, within OKGIIK_01620at 367.200 kb on - strand, within OKGIIK_01620at 367.350 kb on - strand, within OKGIIK_01620at 367.415 kb on + strand, within OKGIIK_01620at 367.415 kb on + strand, within OKGIIK_01620at 367.415 kb on + strand, within OKGIIK_01620at 367.415 kb on + strand, within OKGIIK_01620at 367.415 kb on + strand, within OKGIIK_01620at 367.415 kb on + strand, within OKGIIK_01620at 367.415 kb on + strand, within OKGIIK_01620at 367.415 kb on + strand, within OKGIIK_01620at 367.415 kb on + strand, within OKGIIK_01620at 367.415 kb on + strand, within OKGIIK_01620at 367.415 kb on + strand, within OKGIIK_01620at 367.415 kb on + strand, within OKGIIK_01620at 367.415 kb on + strand, within OKGIIK_01620at 367.415 kb on + strand, within OKGIIK_01620at 367.415 kb on + strand, within OKGIIK_01620at 367.415 kb on + strand, within OKGIIK_01620at 367.415 kb on + strand, within OKGIIK_01620at 367.415 kb on + strand, within OKGIIK_01620at 367.415 kb on + strand, within OKGIIK_01620at 367.415 kb on + strand, within OKGIIK_01620at 367.415 kb on + strand, within OKGIIK_01620at 367.416 kb on - strand, within OKGIIK_01620at 367.416 kb on - strand, within OKGIIK_01620at 367.416 kb on - strand, within OKGIIK_01620at 367.416 kb on - strand, within OKGIIK_01620at 367.416 kb on - strand, within OKGIIK_01620at 367.416 kb on - strand, within OKGIIK_01620at 367.416 kb on - strand, within OKGIIK_01620at 367.416 kb on - strand, within OKGIIK_01620at 367.416 kb on - strand, within OKGIIK_01620at 367.416 kb on - strand, within OKGIIK_01620at 367.416 kb on - strand, within OKGIIK_01620at 367.416 kb on - strand, within OKGIIK_01620at 367.416 kb on - strand, within OKGIIK_01620at 367.416 kb on - strand, within OKGIIK_01620at 367.416 kb on - strand, within OKGIIK_01620at 367.416 kb on - strand, within OKGIIK_01620at 367.416 kb on - strand, within OKGIIK_01620at 367.416 kb on - strand, within OKGIIK_01620at 367.416 kb on - strand, within OKGIIK_01620at 367.416 kb on - strand, within OKGIIK_01620at 367.416 kb on - strand, within OKGIIK_01620at 367.416 kb on - strand, within OKGIIK_01620at 367.416 kb on - strand, within OKGIIK_01620at 367.416 kb on - strand, within OKGIIK_01620at 367.523 kb on + strand, within OKGIIK_01620at 367.523 kb on + strand, within OKGIIK_01620at 367.523 kb on + strand, within OKGIIK_01620at 367.523 kb on + strand, within OKGIIK_01620at 367.523 kb on + strand, within OKGIIK_01620at 367.524 kb on - strand, within OKGIIK_01620at 367.667 kb on + strandat 367.668 kb on - strandat 367.740 kb on - strandat 367.780 kb on + strandat 367.780 kb on + strandat 367.780 kb on + strandat 367.780 kb on + strandat 367.780 kb on + strandat 367.780 kb on + strandat 367.780 kb on + strandat 367.781 kb on - strandat 367.781 kb on - strandat 367.781 kb on - strandat 367.781 kb on - strandat 367.781 kb on - strandat 367.781 kb on - strandat 367.781 kb on - strandat 367.781 kb on - strandat 368.025 kb on - strand, within OKGIIK_01625at 368.105 kb on + strand, within OKGIIK_01625at 368.105 kb on + strand, within OKGIIK_01625at 368.105 kb on + strand, within OKGIIK_01625at 368.105 kb on + strand, within OKGIIK_01625at 368.105 kb on + strand, within OKGIIK_01625at 368.105 kb on + strand, within OKGIIK_01625at 368.105 kb on + strand, within OKGIIK_01625at 368.105 kb on + strand, within OKGIIK_01625at 368.105 kb on + strand, within OKGIIK_01625at 368.105 kb on + strand, within OKGIIK_01625at 368.105 kb on + strand, within OKGIIK_01625at 368.105 kb on + strand, within OKGIIK_01625at 368.105 kb on + strand, within OKGIIK_01625at 368.105 kb on + strand, within OKGIIK_01625at 368.105 kb on + strand, within OKGIIK_01625at 368.105 kb on + strand, within OKGIIK_01625at 368.106 kb on - strand, within OKGIIK_01625at 368.106 kb on - strand, within OKGIIK_01625at 368.106 kb on - strand, within OKGIIK_01625at 368.106 kb on - strand, within OKGIIK_01625at 368.106 kb on - strand, within OKGIIK_01625at 368.106 kb on - strand, within OKGIIK_01625at 368.106 kb on - strand, within OKGIIK_01625at 368.106 kb on - strand, within OKGIIK_01625at 368.106 kb on - strand, within OKGIIK_01625at 368.106 kb on - strand, within OKGIIK_01625at 368.106 kb on - strand, within OKGIIK_01625at 368.183 kb on + strand, within OKGIIK_01625at 368.184 kb on - strand, within OKGIIK_01625at 368.184 kb on - strand, within OKGIIK_01625at 368.184 kb on - strand, within OKGIIK_01625at 368.184 kb on - strand, within OKGIIK_01625at 368.327 kb on + strand, within OKGIIK_01625at 368.327 kb on + strand, within OKGIIK_01625at 368.327 kb on + strand, within OKGIIK_01625at 368.327 kb on + strand, within OKGIIK_01625at 368.328 kb on - strand, within OKGIIK_01625at 368.328 kb on - strand, within OKGIIK_01625at 368.328 kb on - strand, within OKGIIK_01625at 368.328 kb on - strand, within OKGIIK_01625at 368.328 kb on - strand, within OKGIIK_01625at 368.328 kb on - strand, within OKGIIK_01625at 368.329 kb on + strand, within OKGIIK_01625at 368.329 kb on + strand, within OKGIIK_01625at 368.330 kb on - strand, within OKGIIK_01625at 368.330 kb on - strand, within OKGIIK_01625at 368.472 kb on - strand, within OKGIIK_01625at 368.472 kb on - strand, within OKGIIK_01625at 368.597 kb on + strand, within OKGIIK_01625at 368.598 kb on - strand, within OKGIIK_01625at 368.598 kb on - strand, within OKGIIK_01625at 368.598 kb on - strand, within OKGIIK_01625at 368.903 kb on - strand, within OKGIIK_01630at 369.073 kb on + strand, within OKGIIK_01630at 369.073 kb on + strand, within OKGIIK_01630at 369.073 kb on + strand, within OKGIIK_01630at 369.073 kb on + strand, within OKGIIK_01630at 369.073 kb on + strand, within OKGIIK_01630at 369.073 kb on + strand, within OKGIIK_01630at 369.074 kb on - strand, within OKGIIK_01630at 369.074 kb on - strand, within OKGIIK_01630at 369.142 kb on + strand, within OKGIIK_01630at 369.142 kb on + strand, within OKGIIK_01630at 369.143 kb on - strand, within OKGIIK_01630at 369.332 kb on - strand, within OKGIIK_01630at 369.332 kb on - strand, within OKGIIK_01630at 369.407 kb on - strand, within OKGIIK_01630at 369.407 kb on - strand, within OKGIIK_01630at 369.407 kb on - strand, within OKGIIK_01630at 369.558 kb on + strand, within OKGIIK_01630at 369.558 kb on + strand, within OKGIIK_01630at 369.558 kb on + strand, within OKGIIK_01630at 369.558 kb on + strand, within OKGIIK_01630at 369.558 kb on + strand, within OKGIIK_01630at 369.558 kb on + strand, within OKGIIK_01630at 369.558 kb on + strand, within OKGIIK_01630at 369.558 kb on + strand, within OKGIIK_01630at 369.558 kb on + strand, within OKGIIK_01630at 369.558 kb on + strand, within OKGIIK_01630at 369.558 kb on + strand, within OKGIIK_01630at 369.559 kb on - strand, within OKGIIK_01630at 369.559 kb on - strand, within OKGIIK_01630at 369.559 kb on - strand, within OKGIIK_01630at 369.559 kb on - strand, within OKGIIK_01630at 369.559 kb on - strand, within OKGIIK_01630at 369.559 kb on - strand, within OKGIIK_01630at 369.559 kb on - strand, within OKGIIK_01630at 369.559 kb on - strand, within OKGIIK_01630at 369.559 kb on - strand, within OKGIIK_01630at 369.646 kb on + strand, within OKGIIK_01630at 369.646 kb on + strand, within OKGIIK_01630at 369.646 kb on + strand, within OKGIIK_01630at 369.647 kb on - strand, within OKGIIK_01630at 369.647 kb on - strand, within OKGIIK_01630at 369.647 kb on - strand, within OKGIIK_01630at 369.647 kb on - strand, within OKGIIK_01630at 369.647 kb on - strand, within OKGIIK_01630at 369.647 kb on - strand, within OKGIIK_01630at 369.647 kb on - strand, within OKGIIK_01630at 369.647 kb on - strand, within OKGIIK_01630

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Cobalt chloride 512 uM
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366,905 + -1.1
366,905 + -1.6
366,905 + +0.6
366,905 + +0.9
366,905 + -1.1
366,905 + +1.1
366,905 + +0.4
366,905 + -0.9
366,905 + +0.8
366,905 + -0.6
366,905 + +0.4
366,905 + +0.4
367,185 - OKGIIK_01620 0.40 -1.6
367,185 - OKGIIK_01620 0.40 -1.0
367,199 + OKGIIK_01620 0.41 -0.3
367,199 + OKGIIK_01620 0.41 -1.6
367,199 + OKGIIK_01620 0.41 -0.3
367,199 + OKGIIK_01620 0.41 -0.5
367,199 + OKGIIK_01620 0.41 -0.7
367,199 + OKGIIK_01620 0.41 -1.1
367,199 + OKGIIK_01620 0.41 -1.6
367,199 + OKGIIK_01620 0.41 -1.7
367,199 + OKGIIK_01620 0.41 -0.7
367,199 + OKGIIK_01620 0.41 -0.6
367,199 + OKGIIK_01620 0.41 -0.2
367,199 + OKGIIK_01620 0.41 -1.5
367,199 + OKGIIK_01620 0.41 +2.4
367,200 - OKGIIK_01620 0.42 +0.1
367,200 - OKGIIK_01620 0.42 +0.4
367,200 - OKGIIK_01620 0.42 -1.7
367,200 - OKGIIK_01620 0.42 -1.4
367,200 - OKGIIK_01620 0.42 +1.0
367,200 - OKGIIK_01620 0.42 +0.8
367,200 - OKGIIK_01620 0.42 -0.2
367,200 - OKGIIK_01620 0.42 -1.3
367,200 - OKGIIK_01620 0.42 +1.1
367,200 - OKGIIK_01620 0.42 -1.6
367,200 - OKGIIK_01620 0.42 +1.6
367,200 - OKGIIK_01620 0.42 -0.2
367,200 - OKGIIK_01620 0.42 +1.4
367,200 - OKGIIK_01620 0.42 -0.4
367,200 - OKGIIK_01620 0.42 -0.4
367,200 - OKGIIK_01620 0.42 +1.0
367,200 - OKGIIK_01620 0.42 +0.4
367,200 - OKGIIK_01620 0.42 -1.7
367,350 - OKGIIK_01620 0.63 -2.2
367,415 + OKGIIK_01620 0.72 -1.9
367,415 + OKGIIK_01620 0.72 +0.0
367,415 + OKGIIK_01620 0.72 +1.1
367,415 + OKGIIK_01620 0.72 +1.2
367,415 + OKGIIK_01620 0.72 -1.6
367,415 + OKGIIK_01620 0.72 -0.5
367,415 + OKGIIK_01620 0.72 +0.4
367,415 + OKGIIK_01620 0.72 +0.0
367,415 + OKGIIK_01620 0.72 +0.8
367,415 + OKGIIK_01620 0.72 +0.9
367,415 + OKGIIK_01620 0.72 -0.9
367,415 + OKGIIK_01620 0.72 +0.3
367,415 + OKGIIK_01620 0.72 -0.0
367,415 + OKGIIK_01620 0.72 +1.4
367,415 + OKGIIK_01620 0.72 +0.5
367,415 + OKGIIK_01620 0.72 +0.1
367,415 + OKGIIK_01620 0.72 +0.2
367,415 + OKGIIK_01620 0.72 +0.0
367,415 + OKGIIK_01620 0.72 -0.8
367,415 + OKGIIK_01620 0.72 +0.3
367,415 + OKGIIK_01620 0.72 +0.1
367,416 - OKGIIK_01620 0.72 +1.4
367,416 - OKGIIK_01620 0.72 +0.2
367,416 - OKGIIK_01620 0.72 -0.6
367,416 - OKGIIK_01620 0.72 +1.4
367,416 - OKGIIK_01620 0.72 -0.6
367,416 - OKGIIK_01620 0.72 -1.9
367,416 - OKGIIK_01620 0.72 +0.2
367,416 - OKGIIK_01620 0.72 -0.2
367,416 - OKGIIK_01620 0.72 -0.2
367,416 - OKGIIK_01620 0.72 -0.1
367,416 - OKGIIK_01620 0.72 -2.3
367,416 - OKGIIK_01620 0.72 +1.2
367,416 - OKGIIK_01620 0.72 -0.6
367,416 - OKGIIK_01620 0.72 +2.4
367,416 - OKGIIK_01620 0.72 -0.1
367,416 - OKGIIK_01620 0.72 -0.7
367,416 - OKGIIK_01620 0.72 +0.2
367,416 - OKGIIK_01620 0.72 -1.6
367,416 - OKGIIK_01620 0.72 -0.4
367,416 - OKGIIK_01620 0.72 -0.6
367,416 - OKGIIK_01620 0.72 +0.4
367,416 - OKGIIK_01620 0.72 -0.6
367,416 - OKGIIK_01620 0.72 -1.4
367,416 - OKGIIK_01620 0.72 -1.1
367,523 + OKGIIK_01620 0.87 +0.3
367,523 + OKGIIK_01620 0.87 -0.4
367,523 + OKGIIK_01620 0.87 -1.3
367,523 + OKGIIK_01620 0.87 +0.1
367,523 + OKGIIK_01620 0.87 -0.7
367,524 - OKGIIK_01620 0.87 -0.9
367,667 + +0.3
367,668 - -0.9
367,740 - +0.4
367,780 + +0.8
367,780 + -1.9
367,780 + -0.7
367,780 + +0.7
367,780 + -0.2
367,780 + +0.7
367,780 + +1.8
367,781 - -1.4
367,781 - -0.7
367,781 - -1.0
367,781 - -1.2
367,781 - +1.0
367,781 - +0.1
367,781 - -0.9
367,781 - -0.6
368,025 - OKGIIK_01625 0.27 -0.6
368,105 + OKGIIK_01625 0.35 -0.4
368,105 + OKGIIK_01625 0.35 -0.3
368,105 + OKGIIK_01625 0.35 -0.6
368,105 + OKGIIK_01625 0.35 -0.6
368,105 + OKGIIK_01625 0.35 -0.6
368,105 + OKGIIK_01625 0.35 -0.6
368,105 + OKGIIK_01625 0.35 -0.4
368,105 + OKGIIK_01625 0.35 -0.6
368,105 + OKGIIK_01625 0.35 -0.6
368,105 + OKGIIK_01625 0.35 +0.3
368,105 + OKGIIK_01625 0.35 +0.3
368,105 + OKGIIK_01625 0.35 -1.6
368,105 + OKGIIK_01625 0.35 +1.4
368,105 + OKGIIK_01625 0.35 -0.6
368,105 + OKGIIK_01625 0.35 -2.2
368,105 + OKGIIK_01625 0.35 -0.4
368,106 - OKGIIK_01625 0.35 -1.4
368,106 - OKGIIK_01625 0.35 -0.6
368,106 - OKGIIK_01625 0.35 +0.1
368,106 - OKGIIK_01625 0.35 +2.0
368,106 - OKGIIK_01625 0.35 -0.2
368,106 - OKGIIK_01625 0.35 +0.8
368,106 - OKGIIK_01625 0.35 -0.1
368,106 - OKGIIK_01625 0.35 -0.6
368,106 - OKGIIK_01625 0.35 -0.7
368,106 - OKGIIK_01625 0.35 +0.7
368,106 - OKGIIK_01625 0.35 +0.3
368,183 + OKGIIK_01625 0.43 +0.3
368,184 - OKGIIK_01625 0.43 -2.1
368,184 - OKGIIK_01625 0.43 +0.4
368,184 - OKGIIK_01625 0.43 -0.9
368,184 - OKGIIK_01625 0.43 -0.8
368,327 + OKGIIK_01625 0.59 +0.2
368,327 + OKGIIK_01625 0.59 +0.2
368,327 + OKGIIK_01625 0.59 -2.3
368,327 + OKGIIK_01625 0.59 -0.7
368,328 - OKGIIK_01625 0.59 +1.1
368,328 - OKGIIK_01625 0.59 -1.4
368,328 - OKGIIK_01625 0.59 +0.4
368,328 - OKGIIK_01625 0.59 +2.0
368,328 - OKGIIK_01625 0.59 -0.9
368,328 - OKGIIK_01625 0.59 -1.0
368,329 + OKGIIK_01625 0.59 +0.1
368,329 + OKGIIK_01625 0.59 -0.1
368,330 - OKGIIK_01625 0.59 +0.4
368,330 - OKGIIK_01625 0.59 +0.4
368,472 - OKGIIK_01625 0.74 -1.0
368,472 - OKGIIK_01625 0.74 +0.2
368,597 + OKGIIK_01625 0.87 -2.4
368,598 - OKGIIK_01625 0.87 +0.4
368,598 - OKGIIK_01625 0.87 -1.6
368,598 - OKGIIK_01625 0.87 -0.9
368,903 - OKGIIK_01630 0.17 +0.9
369,073 + OKGIIK_01630 0.32 +0.4
369,073 + OKGIIK_01630 0.32 +0.9
369,073 + OKGIIK_01630 0.32 -0.0
369,073 + OKGIIK_01630 0.32 -0.9
369,073 + OKGIIK_01630 0.32 +0.7
369,073 + OKGIIK_01630 0.32 -0.9
369,074 - OKGIIK_01630 0.32 +0.4
369,074 - OKGIIK_01630 0.32 +0.4
369,142 + OKGIIK_01630 0.39 -0.2
369,142 + OKGIIK_01630 0.39 -0.6
369,143 - OKGIIK_01630 0.39 -1.5
369,332 - OKGIIK_01630 0.56 -0.2
369,332 - OKGIIK_01630 0.56 -1.5
369,407 - OKGIIK_01630 0.62 +0.6
369,407 - OKGIIK_01630 0.62 +1.4
369,407 - OKGIIK_01630 0.62 +1.1
369,558 + OKGIIK_01630 0.76 -1.7
369,558 + OKGIIK_01630 0.76 +1.1
369,558 + OKGIIK_01630 0.76 -1.9
369,558 + OKGIIK_01630 0.76 -0.6
369,558 + OKGIIK_01630 0.76 +0.5
369,558 + OKGIIK_01630 0.76 +0.3
369,558 + OKGIIK_01630 0.76 -1.7
369,558 + OKGIIK_01630 0.76 -0.2
369,558 + OKGIIK_01630 0.76 +0.7
369,558 + OKGIIK_01630 0.76 -0.4
369,558 + OKGIIK_01630 0.76 +1.0
369,559 - OKGIIK_01630 0.76 -0.2
369,559 - OKGIIK_01630 0.76 +0.2
369,559 - OKGIIK_01630 0.76 -1.1
369,559 - OKGIIK_01630 0.76 -0.9
369,559 - OKGIIK_01630 0.76 -0.9
369,559 - OKGIIK_01630 0.76 +0.1
369,559 - OKGIIK_01630 0.76 -0.6
369,559 - OKGIIK_01630 0.76 -1.9
369,559 - OKGIIK_01630 0.76 +0.4
369,646 + OKGIIK_01630 0.84 -0.8
369,646 + OKGIIK_01630 0.84 -0.5
369,646 + OKGIIK_01630 0.84 +0.4
369,647 - OKGIIK_01630 0.84 +1.4
369,647 - OKGIIK_01630 0.84 -0.8
369,647 - OKGIIK_01630 0.84 +0.3
369,647 - OKGIIK_01630 0.84 +0.8
369,647 - OKGIIK_01630 0.84 -0.5
369,647 - OKGIIK_01630 0.84 -1.5
369,647 - OKGIIK_01630 0.84 -0.3
369,647 - OKGIIK_01630 0.84 -0.8

Or see this region's nucleotide sequence