Experiment: R2A_PIPES with Cobalt chloride 512 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt purH and OKGIIK_16810 are separated by 69 nucleotides OKGIIK_16810 and OKGIIK_16815 are separated by 145 nucleotides
OKGIIK_16805: purH - bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase, at 3,685,929 to 3,687,539
purH
OKGIIK_16810: OKGIIK_16810 - Putative Fis-like DNA-binding protein, at 3,687,609 to 3,687,932
_16810
OKGIIK_16815: OKGIIK_16815 - DUF3426 domain-containing protein, at 3,688,078 to 3,688,938
_16815
Position (kb)
3687
3688 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3687.574 kb on + strand at 3687.574 kb on + strand at 3687.574 kb on + strand at 3687.574 kb on + strand at 3687.574 kb on + strand at 3687.574 kb on + strand at 3687.574 kb on + strand at 3687.574 kb on + strand at 3687.574 kb on + strand at 3687.574 kb on + strand at 3687.574 kb on + strand at 3687.574 kb on + strand at 3687.574 kb on + strand at 3687.574 kb on + strand at 3687.575 kb on - strand at 3687.575 kb on - strand at 3687.575 kb on - strand at 3687.575 kb on - strand at 3687.575 kb on - strand at 3687.575 kb on - strand at 3687.575 kb on - strand at 3687.575 kb on - strand at 3687.575 kb on - strand at 3687.575 kb on - strand at 3687.575 kb on - strand at 3687.575 kb on - strand at 3687.610 kb on + strand at 3687.610 kb on + strand at 3687.610 kb on + strand at 3687.610 kb on + strand at 3687.610 kb on + strand at 3687.610 kb on + strand at 3687.610 kb on + strand at 3687.611 kb on - strand at 3687.611 kb on - strand at 3687.611 kb on - strand at 3687.611 kb on - strand at 3687.796 kb on + strand, within OKGIIK_16810 at 3687.804 kb on + strand, within OKGIIK_16810 at 3687.915 kb on + strand at 3687.976 kb on - strand at 3688.072 kb on + strand at 3688.072 kb on + strand at 3688.073 kb on - strand at 3688.073 kb on - strand at 3688.073 kb on - strand at 3688.079 kb on + strand at 3688.080 kb on - strand at 3688.080 kb on - strand at 3688.080 kb on - strand at 3688.080 kb on - strand at 3688.196 kb on + strand, within OKGIIK_16815 at 3688.196 kb on + strand, within OKGIIK_16815 at 3688.196 kb on + strand, within OKGIIK_16815 at 3688.197 kb on - strand, within OKGIIK_16815 at 3688.227 kb on + strand, within OKGIIK_16815 at 3688.227 kb on + strand, within OKGIIK_16815 at 3688.730 kb on + strand, within OKGIIK_16815
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Cobalt chloride 512 uM remove 3,687,574 + +0.0 3,687,574 + +0.6 3,687,574 + +0.2 3,687,574 + -2.4 3,687,574 + +0.6 3,687,574 + +0.0 3,687,574 + +0.5 3,687,574 + +0.0 3,687,574 + +1.3 3,687,574 + -0.1 3,687,574 + -0.8 3,687,574 + +0.7 3,687,574 + -0.7 3,687,574 + +1.3 3,687,575 - -0.2 3,687,575 - -1.0 3,687,575 - -0.5 3,687,575 - -0.9 3,687,575 - -1.9 3,687,575 - -0.1 3,687,575 - +1.3 3,687,575 - +0.0 3,687,575 - +1.4 3,687,575 - +0.7 3,687,575 - -0.7 3,687,575 - -0.4 3,687,610 + -1.0 3,687,610 + +0.7 3,687,610 + -0.2 3,687,610 + -1.3 3,687,610 + -1.3 3,687,610 + -1.8 3,687,610 + -2.0 3,687,611 - -1.0 3,687,611 - -0.8 3,687,611 - -1.3 3,687,611 - -0.4 3,687,796 + OKGIIK_16810 0.58 -2.7 3,687,804 + OKGIIK_16810 0.60 -1.3 3,687,915 + +0.6 3,687,976 - -2.0 3,688,072 + +0.1 3,688,072 + -1.0 3,688,073 - -1.0 3,688,073 - -1.1 3,688,073 - -0.5 3,688,079 + +0.3 3,688,080 - +0.7 3,688,080 - +1.5 3,688,080 - +0.7 3,688,080 - -1.5 3,688,196 + OKGIIK_16815 0.14 +0.2 3,688,196 + OKGIIK_16815 0.14 +0.3 3,688,196 + OKGIIK_16815 0.14 +1.3 3,688,197 - OKGIIK_16815 0.14 +0.6 3,688,227 + OKGIIK_16815 0.17 +1.5 3,688,227 + OKGIIK_16815 0.17 -2.9 3,688,730 + OKGIIK_16815 0.76 -1.8
Or see this region's nucleotide sequence