Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_14865

Experiment: R2A_PIPES with Cobalt chloride 512 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntdps and ssuE are separated by 50 nucleotidesssuE and OKGIIK_14865 are separated by 34 nucleotidesOKGIIK_14865 and doxX are separated by 53 nucleotides OKGIIK_14855: dps - DNA starvation/stationary phase protection protein, at 3,232,873 to 3,233,421 dps OKGIIK_14860: ssuE - ACP phosphodiesterase, at 3,233,472 to 3,234,044 ssuE OKGIIK_14865: OKGIIK_14865 - Cation transporter, at 3,234,079 to 3,235,041 _14865 OKGIIK_14870: doxX - Uncharacterized membrane protein YphA, DoxX/SURF4 family, at 3,235,095 to 3,235,481 doxX Position (kb) 3234 3235 3236Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3233.218 kb on + strand, within dpsat 3233.218 kb on + strand, within dpsat 3233.218 kb on + strand, within dpsat 3233.219 kb on - strand, within dpsat 3233.219 kb on - strand, within dpsat 3233.219 kb on - strand, within dpsat 3233.481 kb on + strandat 3233.481 kb on + strandat 3233.481 kb on + strandat 3233.481 kb on + strandat 3233.481 kb on + strandat 3233.482 kb on - strandat 3233.482 kb on - strandat 3233.482 kb on - strandat 3233.482 kb on - strandat 3233.493 kb on + strandat 3233.494 kb on - strandat 3233.494 kb on - strandat 3233.494 kb on - strandat 3233.610 kb on + strand, within ssuEat 3233.610 kb on + strand, within ssuEat 3233.610 kb on + strand, within ssuEat 3233.610 kb on + strand, within ssuEat 3233.611 kb on - strand, within ssuEat 3233.616 kb on + strand, within ssuEat 3233.616 kb on + strand, within ssuEat 3233.616 kb on + strand, within ssuEat 3233.616 kb on + strand, within ssuEat 3233.616 kb on + strand, within ssuEat 3233.616 kb on + strand, within ssuEat 3233.616 kb on + strand, within ssuEat 3233.617 kb on - strand, within ssuEat 3233.617 kb on - strand, within ssuEat 3233.617 kb on - strand, within ssuEat 3233.617 kb on - strand, within ssuEat 3233.617 kb on - strand, within ssuEat 3233.617 kb on - strand, within ssuEat 3233.617 kb on - strand, within ssuEat 3233.622 kb on + strand, within ssuEat 3233.622 kb on + strand, within ssuEat 3233.623 kb on - strand, within ssuEat 3233.623 kb on - strand, within ssuEat 3233.623 kb on - strand, within ssuEat 3233.623 kb on - strand, within ssuEat 3233.623 kb on - strand, within ssuEat 3233.623 kb on - strand, within ssuEat 3233.635 kb on - strand, within ssuEat 3233.706 kb on + strand, within ssuEat 3233.706 kb on + strand, within ssuEat 3233.706 kb on + strand, within ssuEat 3233.706 kb on + strand, within ssuEat 3233.706 kb on + strand, within ssuEat 3233.707 kb on - strand, within ssuEat 3233.707 kb on - strand, within ssuEat 3233.808 kb on - strand, within ssuEat 3233.904 kb on + strand, within ssuEat 3233.904 kb on + strand, within ssuEat 3233.904 kb on + strand, within ssuEat 3233.904 kb on + strand, within ssuEat 3233.904 kb on + strand, within ssuEat 3233.904 kb on + strand, within ssuEat 3233.904 kb on + strand, within ssuEat 3233.904 kb on + strand, within ssuEat 3233.904 kb on + strand, within ssuEat 3233.904 kb on + strand, within ssuEat 3233.904 kb on + strand, within ssuEat 3233.905 kb on - strand, within ssuEat 3233.905 kb on - strand, within ssuEat 3233.905 kb on - strand, within ssuEat 3233.905 kb on - strand, within ssuEat 3233.905 kb on - strand, within ssuEat 3233.905 kb on - strand, within ssuEat 3233.905 kb on - strand, within ssuEat 3233.905 kb on - strand, within ssuEat 3233.905 kb on - strand, within ssuEat 3233.905 kb on - strand, within ssuEat 3233.905 kb on - strand, within ssuEat 3233.905 kb on - strand, within ssuEat 3233.905 kb on - strand, within ssuEat 3233.905 kb on - strand, within ssuEat 3233.905 kb on - strand, within ssuEat 3233.905 kb on - strand, within ssuEat 3233.982 kb on + strand, within ssuEat 3233.982 kb on + strand, within ssuEat 3233.982 kb on + strand, within ssuEat 3233.982 kb on + strand, within ssuEat 3233.982 kb on + strand, within ssuEat 3233.982 kb on + strand, within ssuEat 3233.982 kb on + strand, within ssuEat 3233.982 kb on + strand, within ssuEat 3233.982 kb on + strand, within ssuEat 3233.983 kb on - strand, within ssuEat 3233.983 kb on - strand, within ssuEat 3233.983 kb on - strand, within ssuEat 3233.983 kb on - strand, within ssuEat 3233.983 kb on - strand, within ssuEat 3233.983 kb on - strand, within ssuEat 3233.983 kb on - strand, within ssuEat 3233.983 kb on - strand, within ssuEat 3233.983 kb on - strand, within ssuEat 3233.983 kb on - strand, within ssuEat 3233.983 kb on - strand, within ssuEat 3233.983 kb on - strand, within ssuEat 3233.983 kb on - strand, within ssuEat 3233.983 kb on - strand, within ssuEat 3233.983 kb on - strand, within ssuEat 3233.983 kb on - strand, within ssuEat 3234.244 kb on + strand, within OKGIIK_14865at 3234.244 kb on + strand, within OKGIIK_14865at 3234.244 kb on + strand, within OKGIIK_14865at 3234.245 kb on - strand, within OKGIIK_14865at 3234.245 kb on - strand, within OKGIIK_14865at 3234.245 kb on - strand, within OKGIIK_14865at 3234.295 kb on + strand, within OKGIIK_14865at 3234.310 kb on + strand, within OKGIIK_14865at 3234.310 kb on + strand, within OKGIIK_14865at 3234.310 kb on + strand, within OKGIIK_14865at 3234.311 kb on - strand, within OKGIIK_14865at 3234.311 kb on - strand, within OKGIIK_14865at 3234.311 kb on - strand, within OKGIIK_14865at 3234.311 kb on - strand, within OKGIIK_14865at 3234.311 kb on - strand, within OKGIIK_14865at 3234.370 kb on + strand, within OKGIIK_14865at 3234.370 kb on + strand, within OKGIIK_14865at 3234.371 kb on - strand, within OKGIIK_14865at 3234.427 kb on + strand, within OKGIIK_14865at 3234.427 kb on + strand, within OKGIIK_14865at 3234.427 kb on + strand, within OKGIIK_14865at 3234.428 kb on - strand, within OKGIIK_14865at 3234.428 kb on - strand, within OKGIIK_14865at 3234.518 kb on - strand, within OKGIIK_14865at 3234.520 kb on + strand, within OKGIIK_14865at 3234.520 kb on + strand, within OKGIIK_14865at 3234.520 kb on + strand, within OKGIIK_14865at 3234.521 kb on - strand, within OKGIIK_14865at 3234.647 kb on + strand, within OKGIIK_14865at 3235.096 kb on + strandat 3235.096 kb on + strandat 3235.096 kb on + strandat 3235.097 kb on - strandat 3235.097 kb on - strandat 3235.381 kb on + strand, within doxXat 3235.381 kb on + strand, within doxXat 3235.381 kb on + strand, within doxXat 3235.381 kb on + strand, within doxXat 3235.381 kb on + strand, within doxXat 3235.382 kb on - strand, within doxXat 3235.382 kb on - strand, within doxXat 3235.382 kb on - strand, within doxXat 3235.382 kb on - strand, within doxXat 3235.382 kb on - strand, within doxXat 3235.382 kb on - strand, within doxXat 3235.461 kb on + strandat 3235.461 kb on + strandat 3235.461 kb on + strandat 3235.461 kb on + strandat 3235.512 kb on + strandat 3235.513 kb on - strandat 3235.665 kb on + strandat 3235.666 kb on - strandat 3235.726 kb on + strandat 3235.726 kb on + strandat 3235.726 kb on + strandat 3235.793 kb on + strandat 3235.793 kb on + strandat 3235.794 kb on - strandat 3235.973 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Cobalt chloride 512 uM
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3,233,218 + dps OKGIIK_14855 0.63 +0.8
3,233,218 + dps OKGIIK_14855 0.63 +1.2
3,233,218 + dps OKGIIK_14855 0.63 -1.7
3,233,219 - dps OKGIIK_14855 0.63 -2.2
3,233,219 - dps OKGIIK_14855 0.63 -0.9
3,233,219 - dps OKGIIK_14855 0.63 +0.2
3,233,481 + -0.6
3,233,481 + -0.2
3,233,481 + -1.2
3,233,481 + -0.7
3,233,481 + +0.3
3,233,482 - -0.3
3,233,482 - -1.2
3,233,482 - -1.0
3,233,482 - -2.0
3,233,493 + -0.6
3,233,494 - -0.5
3,233,494 - -1.5
3,233,494 - -2.0
3,233,610 + ssuE OKGIIK_14860 0.24 +0.6
3,233,610 + ssuE OKGIIK_14860 0.24 -1.7
3,233,610 + ssuE OKGIIK_14860 0.24 +0.6
3,233,610 + ssuE OKGIIK_14860 0.24 +1.4
3,233,611 - ssuE OKGIIK_14860 0.24 +0.8
3,233,616 + ssuE OKGIIK_14860 0.25 +0.8
3,233,616 + ssuE OKGIIK_14860 0.25 -0.2
3,233,616 + ssuE OKGIIK_14860 0.25 +0.2
3,233,616 + ssuE OKGIIK_14860 0.25 -0.8
3,233,616 + ssuE OKGIIK_14860 0.25 -1.2
3,233,616 + ssuE OKGIIK_14860 0.25 +1.1
3,233,616 + ssuE OKGIIK_14860 0.25 -1.3
3,233,617 - ssuE OKGIIK_14860 0.25 -0.6
3,233,617 - ssuE OKGIIK_14860 0.25 +0.4
3,233,617 - ssuE OKGIIK_14860 0.25 -1.0
3,233,617 - ssuE OKGIIK_14860 0.25 -2.0
3,233,617 - ssuE OKGIIK_14860 0.25 -0.2
3,233,617 - ssuE OKGIIK_14860 0.25 +0.4
3,233,617 - ssuE OKGIIK_14860 0.25 -0.3
3,233,622 + ssuE OKGIIK_14860 0.26 -1.1
3,233,622 + ssuE OKGIIK_14860 0.26 -1.5
3,233,623 - ssuE OKGIIK_14860 0.26 +0.8
3,233,623 - ssuE OKGIIK_14860 0.26 +0.4
3,233,623 - ssuE OKGIIK_14860 0.26 -0.3
3,233,623 - ssuE OKGIIK_14860 0.26 -1.3
3,233,623 - ssuE OKGIIK_14860 0.26 -0.4
3,233,623 - ssuE OKGIIK_14860 0.26 -1.5
3,233,635 - ssuE OKGIIK_14860 0.28 -0.5
3,233,706 + ssuE OKGIIK_14860 0.41 -1.0
3,233,706 + ssuE OKGIIK_14860 0.41 -1.7
3,233,706 + ssuE OKGIIK_14860 0.41 +0.6
3,233,706 + ssuE OKGIIK_14860 0.41 +1.4
3,233,706 + ssuE OKGIIK_14860 0.41 -1.5
3,233,707 - ssuE OKGIIK_14860 0.41 -1.5
3,233,707 - ssuE OKGIIK_14860 0.41 -1.5
3,233,808 - ssuE OKGIIK_14860 0.59 +0.8
3,233,904 + ssuE OKGIIK_14860 0.75 -1.5
3,233,904 + ssuE OKGIIK_14860 0.75 -1.9
3,233,904 + ssuE OKGIIK_14860 0.75 -0.9
3,233,904 + ssuE OKGIIK_14860 0.75 +1.0
3,233,904 + ssuE OKGIIK_14860 0.75 +1.1
3,233,904 + ssuE OKGIIK_14860 0.75 -1.2
3,233,904 + ssuE OKGIIK_14860 0.75 -2.2
3,233,904 + ssuE OKGIIK_14860 0.75 +0.5
3,233,904 + ssuE OKGIIK_14860 0.75 -0.2
3,233,904 + ssuE OKGIIK_14860 0.75 +0.3
3,233,904 + ssuE OKGIIK_14860 0.75 +0.2
3,233,905 - ssuE OKGIIK_14860 0.76 -0.4
3,233,905 - ssuE OKGIIK_14860 0.76 -2.6
3,233,905 - ssuE OKGIIK_14860 0.76 -1.2
3,233,905 - ssuE OKGIIK_14860 0.76 +0.2
3,233,905 - ssuE OKGIIK_14860 0.76 +1.1
3,233,905 - ssuE OKGIIK_14860 0.76 -0.2
3,233,905 - ssuE OKGIIK_14860 0.76 -0.2
3,233,905 - ssuE OKGIIK_14860 0.76 -0.7
3,233,905 - ssuE OKGIIK_14860 0.76 +0.8
3,233,905 - ssuE OKGIIK_14860 0.76 +0.1
3,233,905 - ssuE OKGIIK_14860 0.76 +1.5
3,233,905 - ssuE OKGIIK_14860 0.76 +0.4
3,233,905 - ssuE OKGIIK_14860 0.76 -0.4
3,233,905 - ssuE OKGIIK_14860 0.76 -0.5
3,233,905 - ssuE OKGIIK_14860 0.76 -0.7
3,233,905 - ssuE OKGIIK_14860 0.76 +0.5
3,233,982 + ssuE OKGIIK_14860 0.89 -1.3
3,233,982 + ssuE OKGIIK_14860 0.89 -0.7
3,233,982 + ssuE OKGIIK_14860 0.89 +0.8
3,233,982 + ssuE OKGIIK_14860 0.89 -0.3
3,233,982 + ssuE OKGIIK_14860 0.89 -3.3
3,233,982 + ssuE OKGIIK_14860 0.89 +0.7
3,233,982 + ssuE OKGIIK_14860 0.89 -1.6
3,233,982 + ssuE OKGIIK_14860 0.89 +0.6
3,233,982 + ssuE OKGIIK_14860 0.89 -0.2
3,233,983 - ssuE OKGIIK_14860 0.89 +0.5
3,233,983 - ssuE OKGIIK_14860 0.89 -2.0
3,233,983 - ssuE OKGIIK_14860 0.89 +0.4
3,233,983 - ssuE OKGIIK_14860 0.89 -1.7
3,233,983 - ssuE OKGIIK_14860 0.89 -0.7
3,233,983 - ssuE OKGIIK_14860 0.89 -0.5
3,233,983 - ssuE OKGIIK_14860 0.89 +1.4
3,233,983 - ssuE OKGIIK_14860 0.89 -1.7
3,233,983 - ssuE OKGIIK_14860 0.89 +0.8
3,233,983 - ssuE OKGIIK_14860 0.89 +0.1
3,233,983 - ssuE OKGIIK_14860 0.89 -1.2
3,233,983 - ssuE OKGIIK_14860 0.89 +0.5
3,233,983 - ssuE OKGIIK_14860 0.89 +0.1
3,233,983 - ssuE OKGIIK_14860 0.89 -0.2
3,233,983 - ssuE OKGIIK_14860 0.89 +0.6
3,233,983 - ssuE OKGIIK_14860 0.89 -1.5
3,234,244 + OKGIIK_14865 0.17 +0.4
3,234,244 + OKGIIK_14865 0.17 -0.4
3,234,244 + OKGIIK_14865 0.17 +0.1
3,234,245 - OKGIIK_14865 0.17 -0.5
3,234,245 - OKGIIK_14865 0.17 -1.2
3,234,245 - OKGIIK_14865 0.17 +0.4
3,234,295 + OKGIIK_14865 0.22 +1.6
3,234,310 + OKGIIK_14865 0.24 -0.2
3,234,310 + OKGIIK_14865 0.24 -0.2
3,234,310 + OKGIIK_14865 0.24 -1.7
3,234,311 - OKGIIK_14865 0.24 +1.4
3,234,311 - OKGIIK_14865 0.24 -0.2
3,234,311 - OKGIIK_14865 0.24 +1.1
3,234,311 - OKGIIK_14865 0.24 +0.8
3,234,311 - OKGIIK_14865 0.24 -1.8
3,234,370 + OKGIIK_14865 0.30 -2.6
3,234,370 + OKGIIK_14865 0.30 +0.1
3,234,371 - OKGIIK_14865 0.30 -2.5
3,234,427 + OKGIIK_14865 0.36 +0.6
3,234,427 + OKGIIK_14865 0.36 +0.0
3,234,427 + OKGIIK_14865 0.36 +0.4
3,234,428 - OKGIIK_14865 0.36 -1.7
3,234,428 - OKGIIK_14865 0.36 +2.8
3,234,518 - OKGIIK_14865 0.46 -1.2
3,234,520 + OKGIIK_14865 0.46 +0.5
3,234,520 + OKGIIK_14865 0.46 +1.4
3,234,520 + OKGIIK_14865 0.46 -0.6
3,234,521 - OKGIIK_14865 0.46 -0.9
3,234,647 + OKGIIK_14865 0.59 -0.9
3,235,096 + -0.9
3,235,096 + -0.7
3,235,096 + -0.7
3,235,097 - +0.3
3,235,097 - -1.0
3,235,381 + doxX OKGIIK_14870 0.74 -0.2
3,235,381 + doxX OKGIIK_14870 0.74 -0.0
3,235,381 + doxX OKGIIK_14870 0.74 -1.5
3,235,381 + doxX OKGIIK_14870 0.74 -1.2
3,235,381 + doxX OKGIIK_14870 0.74 -1.7
3,235,382 - doxX OKGIIK_14870 0.74 -0.6
3,235,382 - doxX OKGIIK_14870 0.74 -1.0
3,235,382 - doxX OKGIIK_14870 0.74 -0.2
3,235,382 - doxX OKGIIK_14870 0.74 -2.9
3,235,382 - doxX OKGIIK_14870 0.74 -1.2
3,235,382 - doxX OKGIIK_14870 0.74 -0.1
3,235,461 + +0.4
3,235,461 + +0.6
3,235,461 + +0.8
3,235,461 + -0.5
3,235,512 + +0.7
3,235,513 - -0.1
3,235,665 + +1.7
3,235,666 - -1.2
3,235,726 + +1.1
3,235,726 + +0.1
3,235,726 + -0.7
3,235,793 + -0.4
3,235,793 + +0.3
3,235,794 - -1.5
3,235,973 - -0.2

Or see this region's nucleotide sequence