Experiment: R2A_PIPES with Cobalt chloride 512 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dps and ssuE are separated by 50 nucleotides ssuE and OKGIIK_14865 are separated by 34 nucleotides OKGIIK_14865 and doxX are separated by 53 nucleotides
OKGIIK_14855: dps - DNA starvation/stationary phase protection protein, at 3,232,873 to 3,233,421
dps
OKGIIK_14860: ssuE - ACP phosphodiesterase, at 3,233,472 to 3,234,044
ssuE
OKGIIK_14865: OKGIIK_14865 - Cation transporter, at 3,234,079 to 3,235,041
_14865
OKGIIK_14870: doxX - Uncharacterized membrane protein YphA, DoxX/SURF4 family, at 3,235,095 to 3,235,481
doxX
Position (kb)
3234
3235
3236 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3233.218 kb on + strand, within dps at 3233.218 kb on + strand, within dps at 3233.218 kb on + strand, within dps at 3233.219 kb on - strand, within dps at 3233.219 kb on - strand, within dps at 3233.219 kb on - strand, within dps at 3233.481 kb on + strand at 3233.481 kb on + strand at 3233.481 kb on + strand at 3233.481 kb on + strand at 3233.481 kb on + strand at 3233.482 kb on - strand at 3233.482 kb on - strand at 3233.482 kb on - strand at 3233.482 kb on - strand at 3233.493 kb on + strand at 3233.494 kb on - strand at 3233.494 kb on - strand at 3233.494 kb on - strand at 3233.610 kb on + strand, within ssuE at 3233.610 kb on + strand, within ssuE at 3233.610 kb on + strand, within ssuE at 3233.610 kb on + strand, within ssuE at 3233.611 kb on - strand, within ssuE at 3233.616 kb on + strand, within ssuE at 3233.616 kb on + strand, within ssuE at 3233.616 kb on + strand, within ssuE at 3233.616 kb on + strand, within ssuE at 3233.616 kb on + strand, within ssuE at 3233.616 kb on + strand, within ssuE at 3233.616 kb on + strand, within ssuE at 3233.617 kb on - strand, within ssuE at 3233.617 kb on - strand, within ssuE at 3233.617 kb on - strand, within ssuE at 3233.617 kb on - strand, within ssuE at 3233.617 kb on - strand, within ssuE at 3233.617 kb on - strand, within ssuE at 3233.617 kb on - strand, within ssuE at 3233.622 kb on + strand, within ssuE at 3233.622 kb on + strand, within ssuE at 3233.623 kb on - strand, within ssuE at 3233.623 kb on - strand, within ssuE at 3233.623 kb on - strand, within ssuE at 3233.623 kb on - strand, within ssuE at 3233.623 kb on - strand, within ssuE at 3233.623 kb on - strand, within ssuE at 3233.635 kb on - strand, within ssuE at 3233.706 kb on + strand, within ssuE at 3233.706 kb on + strand, within ssuE at 3233.706 kb on + strand, within ssuE at 3233.706 kb on + strand, within ssuE at 3233.706 kb on + strand, within ssuE at 3233.707 kb on - strand, within ssuE at 3233.707 kb on - strand, within ssuE at 3233.808 kb on - strand, within ssuE at 3233.904 kb on + strand, within ssuE at 3233.904 kb on + strand, within ssuE at 3233.904 kb on + strand, within ssuE at 3233.904 kb on + strand, within ssuE at 3233.904 kb on + strand, within ssuE at 3233.904 kb on + strand, within ssuE at 3233.904 kb on + strand, within ssuE at 3233.904 kb on + strand, within ssuE at 3233.904 kb on + strand, within ssuE at 3233.904 kb on + strand, within ssuE at 3233.904 kb on + strand, within ssuE at 3233.905 kb on - strand, within ssuE at 3233.905 kb on - strand, within ssuE at 3233.905 kb on - strand, within ssuE at 3233.905 kb on - strand, within ssuE at 3233.905 kb on - strand, within ssuE at 3233.905 kb on - strand, within ssuE at 3233.905 kb on - strand, within ssuE at 3233.905 kb on - strand, within ssuE at 3233.905 kb on - strand, within ssuE at 3233.905 kb on - strand, within ssuE at 3233.905 kb on - strand, within ssuE at 3233.905 kb on - strand, within ssuE at 3233.905 kb on - strand, within ssuE at 3233.905 kb on - strand, within ssuE at 3233.905 kb on - strand, within ssuE at 3233.905 kb on - strand, within ssuE at 3233.982 kb on + strand, within ssuE at 3233.982 kb on + strand, within ssuE at 3233.982 kb on + strand, within ssuE at 3233.982 kb on + strand, within ssuE at 3233.982 kb on + strand, within ssuE at 3233.982 kb on + strand, within ssuE at 3233.982 kb on + strand, within ssuE at 3233.982 kb on + strand, within ssuE at 3233.982 kb on + strand, within ssuE at 3233.983 kb on - strand, within ssuE at 3233.983 kb on - strand, within ssuE at 3233.983 kb on - strand, within ssuE at 3233.983 kb on - strand, within ssuE at 3233.983 kb on - strand, within ssuE at 3233.983 kb on - strand, within ssuE at 3233.983 kb on - strand, within ssuE at 3233.983 kb on - strand, within ssuE at 3233.983 kb on - strand, within ssuE at 3233.983 kb on - strand, within ssuE at 3233.983 kb on - strand, within ssuE at 3233.983 kb on - strand, within ssuE at 3233.983 kb on - strand, within ssuE at 3233.983 kb on - strand, within ssuE at 3233.983 kb on - strand, within ssuE at 3233.983 kb on - strand, within ssuE at 3234.244 kb on + strand, within OKGIIK_14865 at 3234.244 kb on + strand, within OKGIIK_14865 at 3234.244 kb on + strand, within OKGIIK_14865 at 3234.245 kb on - strand, within OKGIIK_14865 at 3234.245 kb on - strand, within OKGIIK_14865 at 3234.245 kb on - strand, within OKGIIK_14865 at 3234.295 kb on + strand, within OKGIIK_14865 at 3234.310 kb on + strand, within OKGIIK_14865 at 3234.310 kb on + strand, within OKGIIK_14865 at 3234.310 kb on + strand, within OKGIIK_14865 at 3234.311 kb on - strand, within OKGIIK_14865 at 3234.311 kb on - strand, within OKGIIK_14865 at 3234.311 kb on - strand, within OKGIIK_14865 at 3234.311 kb on - strand, within OKGIIK_14865 at 3234.311 kb on - strand, within OKGIIK_14865 at 3234.370 kb on + strand, within OKGIIK_14865 at 3234.370 kb on + strand, within OKGIIK_14865 at 3234.371 kb on - strand, within OKGIIK_14865 at 3234.427 kb on + strand, within OKGIIK_14865 at 3234.427 kb on + strand, within OKGIIK_14865 at 3234.427 kb on + strand, within OKGIIK_14865 at 3234.428 kb on - strand, within OKGIIK_14865 at 3234.428 kb on - strand, within OKGIIK_14865 at 3234.518 kb on - strand, within OKGIIK_14865 at 3234.520 kb on + strand, within OKGIIK_14865 at 3234.520 kb on + strand, within OKGIIK_14865 at 3234.520 kb on + strand, within OKGIIK_14865 at 3234.521 kb on - strand, within OKGIIK_14865 at 3234.647 kb on + strand, within OKGIIK_14865 at 3235.096 kb on + strand at 3235.096 kb on + strand at 3235.096 kb on + strand at 3235.097 kb on - strand at 3235.097 kb on - strand at 3235.381 kb on + strand, within doxX at 3235.381 kb on + strand, within doxX at 3235.381 kb on + strand, within doxX at 3235.381 kb on + strand, within doxX at 3235.381 kb on + strand, within doxX at 3235.382 kb on - strand, within doxX at 3235.382 kb on - strand, within doxX at 3235.382 kb on - strand, within doxX at 3235.382 kb on - strand, within doxX at 3235.382 kb on - strand, within doxX at 3235.382 kb on - strand, within doxX at 3235.461 kb on + strand at 3235.461 kb on + strand at 3235.461 kb on + strand at 3235.461 kb on + strand at 3235.512 kb on + strand at 3235.513 kb on - strand at 3235.665 kb on + strand at 3235.666 kb on - strand at 3235.726 kb on + strand at 3235.726 kb on + strand at 3235.726 kb on + strand at 3235.793 kb on + strand at 3235.793 kb on + strand at 3235.794 kb on - strand at 3235.973 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Cobalt chloride 512 uM remove 3,233,218 + dps OKGIIK_14855 0.63 +0.8 3,233,218 + dps OKGIIK_14855 0.63 +1.2 3,233,218 + dps OKGIIK_14855 0.63 -1.7 3,233,219 - dps OKGIIK_14855 0.63 -2.2 3,233,219 - dps OKGIIK_14855 0.63 -0.9 3,233,219 - dps OKGIIK_14855 0.63 +0.2 3,233,481 + -0.6 3,233,481 + -0.2 3,233,481 + -1.2 3,233,481 + -0.7 3,233,481 + +0.3 3,233,482 - -0.3 3,233,482 - -1.2 3,233,482 - -1.0 3,233,482 - -2.0 3,233,493 + -0.6 3,233,494 - -0.5 3,233,494 - -1.5 3,233,494 - -2.0 3,233,610 + ssuE OKGIIK_14860 0.24 +0.6 3,233,610 + ssuE OKGIIK_14860 0.24 -1.7 3,233,610 + ssuE OKGIIK_14860 0.24 +0.6 3,233,610 + ssuE OKGIIK_14860 0.24 +1.4 3,233,611 - ssuE OKGIIK_14860 0.24 +0.8 3,233,616 + ssuE OKGIIK_14860 0.25 +0.8 3,233,616 + ssuE OKGIIK_14860 0.25 -0.2 3,233,616 + ssuE OKGIIK_14860 0.25 +0.2 3,233,616 + ssuE OKGIIK_14860 0.25 -0.8 3,233,616 + ssuE OKGIIK_14860 0.25 -1.2 3,233,616 + ssuE OKGIIK_14860 0.25 +1.1 3,233,616 + ssuE OKGIIK_14860 0.25 -1.3 3,233,617 - ssuE OKGIIK_14860 0.25 -0.6 3,233,617 - ssuE OKGIIK_14860 0.25 +0.4 3,233,617 - ssuE OKGIIK_14860 0.25 -1.0 3,233,617 - ssuE OKGIIK_14860 0.25 -2.0 3,233,617 - ssuE OKGIIK_14860 0.25 -0.2 3,233,617 - ssuE OKGIIK_14860 0.25 +0.4 3,233,617 - ssuE OKGIIK_14860 0.25 -0.3 3,233,622 + ssuE OKGIIK_14860 0.26 -1.1 3,233,622 + ssuE OKGIIK_14860 0.26 -1.5 3,233,623 - ssuE OKGIIK_14860 0.26 +0.8 3,233,623 - ssuE OKGIIK_14860 0.26 +0.4 3,233,623 - ssuE OKGIIK_14860 0.26 -0.3 3,233,623 - ssuE OKGIIK_14860 0.26 -1.3 3,233,623 - ssuE OKGIIK_14860 0.26 -0.4 3,233,623 - ssuE OKGIIK_14860 0.26 -1.5 3,233,635 - ssuE OKGIIK_14860 0.28 -0.5 3,233,706 + ssuE OKGIIK_14860 0.41 -1.0 3,233,706 + ssuE OKGIIK_14860 0.41 -1.7 3,233,706 + ssuE OKGIIK_14860 0.41 +0.6 3,233,706 + ssuE OKGIIK_14860 0.41 +1.4 3,233,706 + ssuE OKGIIK_14860 0.41 -1.5 3,233,707 - ssuE OKGIIK_14860 0.41 -1.5 3,233,707 - ssuE OKGIIK_14860 0.41 -1.5 3,233,808 - ssuE OKGIIK_14860 0.59 +0.8 3,233,904 + ssuE OKGIIK_14860 0.75 -1.5 3,233,904 + ssuE OKGIIK_14860 0.75 -1.9 3,233,904 + ssuE OKGIIK_14860 0.75 -0.9 3,233,904 + ssuE OKGIIK_14860 0.75 +1.0 3,233,904 + ssuE OKGIIK_14860 0.75 +1.1 3,233,904 + ssuE OKGIIK_14860 0.75 -1.2 3,233,904 + ssuE OKGIIK_14860 0.75 -2.2 3,233,904 + ssuE OKGIIK_14860 0.75 +0.5 3,233,904 + ssuE OKGIIK_14860 0.75 -0.2 3,233,904 + ssuE OKGIIK_14860 0.75 +0.3 3,233,904 + ssuE OKGIIK_14860 0.75 +0.2 3,233,905 - ssuE OKGIIK_14860 0.76 -0.4 3,233,905 - ssuE OKGIIK_14860 0.76 -2.6 3,233,905 - ssuE OKGIIK_14860 0.76 -1.2 3,233,905 - ssuE OKGIIK_14860 0.76 +0.2 3,233,905 - ssuE OKGIIK_14860 0.76 +1.1 3,233,905 - ssuE OKGIIK_14860 0.76 -0.2 3,233,905 - ssuE OKGIIK_14860 0.76 -0.2 3,233,905 - ssuE OKGIIK_14860 0.76 -0.7 3,233,905 - ssuE OKGIIK_14860 0.76 +0.8 3,233,905 - ssuE OKGIIK_14860 0.76 +0.1 3,233,905 - ssuE OKGIIK_14860 0.76 +1.5 3,233,905 - ssuE OKGIIK_14860 0.76 +0.4 3,233,905 - ssuE OKGIIK_14860 0.76 -0.4 3,233,905 - ssuE OKGIIK_14860 0.76 -0.5 3,233,905 - ssuE OKGIIK_14860 0.76 -0.7 3,233,905 - ssuE OKGIIK_14860 0.76 +0.5 3,233,982 + ssuE OKGIIK_14860 0.89 -1.3 3,233,982 + ssuE OKGIIK_14860 0.89 -0.7 3,233,982 + ssuE OKGIIK_14860 0.89 +0.8 3,233,982 + ssuE OKGIIK_14860 0.89 -0.3 3,233,982 + ssuE OKGIIK_14860 0.89 -3.3 3,233,982 + ssuE OKGIIK_14860 0.89 +0.7 3,233,982 + ssuE OKGIIK_14860 0.89 -1.6 3,233,982 + ssuE OKGIIK_14860 0.89 +0.6 3,233,982 + ssuE OKGIIK_14860 0.89 -0.2 3,233,983 - ssuE OKGIIK_14860 0.89 +0.5 3,233,983 - ssuE OKGIIK_14860 0.89 -2.0 3,233,983 - ssuE OKGIIK_14860 0.89 +0.4 3,233,983 - ssuE OKGIIK_14860 0.89 -1.7 3,233,983 - ssuE OKGIIK_14860 0.89 -0.7 3,233,983 - ssuE OKGIIK_14860 0.89 -0.5 3,233,983 - ssuE OKGIIK_14860 0.89 +1.4 3,233,983 - ssuE OKGIIK_14860 0.89 -1.7 3,233,983 - ssuE OKGIIK_14860 0.89 +0.8 3,233,983 - ssuE OKGIIK_14860 0.89 +0.1 3,233,983 - ssuE OKGIIK_14860 0.89 -1.2 3,233,983 - ssuE OKGIIK_14860 0.89 +0.5 3,233,983 - ssuE OKGIIK_14860 0.89 +0.1 3,233,983 - ssuE OKGIIK_14860 0.89 -0.2 3,233,983 - ssuE OKGIIK_14860 0.89 +0.6 3,233,983 - ssuE OKGIIK_14860 0.89 -1.5 3,234,244 + OKGIIK_14865 0.17 +0.4 3,234,244 + OKGIIK_14865 0.17 -0.4 3,234,244 + OKGIIK_14865 0.17 +0.1 3,234,245 - OKGIIK_14865 0.17 -0.5 3,234,245 - OKGIIK_14865 0.17 -1.2 3,234,245 - OKGIIK_14865 0.17 +0.4 3,234,295 + OKGIIK_14865 0.22 +1.6 3,234,310 + OKGIIK_14865 0.24 -0.2 3,234,310 + OKGIIK_14865 0.24 -0.2 3,234,310 + OKGIIK_14865 0.24 -1.7 3,234,311 - OKGIIK_14865 0.24 +1.4 3,234,311 - OKGIIK_14865 0.24 -0.2 3,234,311 - OKGIIK_14865 0.24 +1.1 3,234,311 - OKGIIK_14865 0.24 +0.8 3,234,311 - OKGIIK_14865 0.24 -1.8 3,234,370 + OKGIIK_14865 0.30 -2.6 3,234,370 + OKGIIK_14865 0.30 +0.1 3,234,371 - OKGIIK_14865 0.30 -2.5 3,234,427 + OKGIIK_14865 0.36 +0.6 3,234,427 + OKGIIK_14865 0.36 +0.0 3,234,427 + OKGIIK_14865 0.36 +0.4 3,234,428 - OKGIIK_14865 0.36 -1.7 3,234,428 - OKGIIK_14865 0.36 +2.8 3,234,518 - OKGIIK_14865 0.46 -1.2 3,234,520 + OKGIIK_14865 0.46 +0.5 3,234,520 + OKGIIK_14865 0.46 +1.4 3,234,520 + OKGIIK_14865 0.46 -0.6 3,234,521 - OKGIIK_14865 0.46 -0.9 3,234,647 + OKGIIK_14865 0.59 -0.9 3,235,096 + -0.9 3,235,096 + -0.7 3,235,096 + -0.7 3,235,097 - +0.3 3,235,097 - -1.0 3,235,381 + doxX OKGIIK_14870 0.74 -0.2 3,235,381 + doxX OKGIIK_14870 0.74 -0.0 3,235,381 + doxX OKGIIK_14870 0.74 -1.5 3,235,381 + doxX OKGIIK_14870 0.74 -1.2 3,235,381 + doxX OKGIIK_14870 0.74 -1.7 3,235,382 - doxX OKGIIK_14870 0.74 -0.6 3,235,382 - doxX OKGIIK_14870 0.74 -1.0 3,235,382 - doxX OKGIIK_14870 0.74 -0.2 3,235,382 - doxX OKGIIK_14870 0.74 -2.9 3,235,382 - doxX OKGIIK_14870 0.74 -1.2 3,235,382 - doxX OKGIIK_14870 0.74 -0.1 3,235,461 + +0.4 3,235,461 + +0.6 3,235,461 + +0.8 3,235,461 + -0.5 3,235,512 + +0.7 3,235,513 - -0.1 3,235,665 + +1.7 3,235,666 - -1.2 3,235,726 + +1.1 3,235,726 + +0.1 3,235,726 + -0.7 3,235,793 + -0.4 3,235,793 + +0.3 3,235,794 - -1.5 3,235,973 - -0.2
Or see this region's nucleotide sequence