Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_10175

Experiment: R2A_PIPES with Cobalt chloride 512 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntdxr and rseP are separated by 36 nucleotidesrseP and bamA are separated by 198 nucleotides OKGIIK_10170: dxr - 1-deoxy-D-xylulose-5-phosphate reductoisomerase, at 2,191,911 to 2,193,086 dxr OKGIIK_10175: rseP - RIP metalloprotease RseP, at 2,193,123 to 2,194,469 rseP OKGIIK_10180: bamA - outer membrane protein assembly factor BamA, at 2,194,668 to 2,197,085 bamA Position (kb) 2193 2194 2195Strain fitness (log2 ratio) -3 -2 -1 0 1at 2193.087 kb on + strandat 2193.087 kb on + strandat 2193.087 kb on + strandat 2193.087 kb on + strandat 2193.087 kb on + strandat 2193.087 kb on + strandat 2193.087 kb on + strandat 2193.088 kb on - strandat 2193.088 kb on - strandat 2193.088 kb on - strandat 2193.088 kb on - strandat 2193.088 kb on - strandat 2193.088 kb on - strandat 2193.088 kb on - strandat 2193.117 kb on + strandat 2193.117 kb on + strandat 2193.117 kb on + strandat 2193.117 kb on + strandat 2193.117 kb on + strandat 2193.117 kb on + strandat 2193.117 kb on + strandat 2193.117 kb on + strandat 2193.117 kb on + strandat 2193.117 kb on + strandat 2193.117 kb on + strandat 2193.117 kb on + strandat 2193.117 kb on + strandat 2193.117 kb on + strandat 2193.117 kb on + strandat 2193.117 kb on + strandat 2193.118 kb on - strandat 2193.118 kb on - strandat 2193.118 kb on - strandat 2193.118 kb on - strandat 2194.068 kb on + strand, within rsePat 2194.329 kb on + strand, within rsePat 2194.329 kb on + strand, within rsePat 2194.332 kb on + strand, within rsePat 2194.392 kb on + strandat 2194.392 kb on + strandat 2194.437 kb on + strandat 2194.437 kb on + strandat 2194.437 kb on + strandat 2194.437 kb on + strandat 2194.437 kb on + strandat 2194.470 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Cobalt chloride 512 uM
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2,193,087 + +0.3
2,193,087 + +1.1
2,193,087 + +0.2
2,193,087 + -1.5
2,193,087 + -2.0
2,193,087 + -1.6
2,193,087 + -2.2
2,193,088 - -0.2
2,193,088 - +0.2
2,193,088 - -1.4
2,193,088 - -0.4
2,193,088 - -1.3
2,193,088 - -1.5
2,193,088 - -0.8
2,193,117 + -1.8
2,193,117 + +0.7
2,193,117 + +0.9
2,193,117 + +0.7
2,193,117 + +0.4
2,193,117 + -1.6
2,193,117 + -0.0
2,193,117 + +0.4
2,193,117 + +0.0
2,193,117 + -0.6
2,193,117 + +0.4
2,193,117 + +0.4
2,193,117 + -1.8
2,193,117 + -2.5
2,193,117 + +0.2
2,193,117 + +0.2
2,193,118 - -0.8
2,193,118 - -1.4
2,193,118 - -2.8
2,193,118 - -1.6
2,194,068 + rseP OKGIIK_10175 0.70 -2.3
2,194,329 + rseP OKGIIK_10175 0.90 -1.6
2,194,329 + rseP OKGIIK_10175 0.90 -1.8
2,194,332 + rseP OKGIIK_10175 0.90 -2.0
2,194,392 + -2.3
2,194,392 + -2.5
2,194,437 + -1.2
2,194,437 + -1.4
2,194,437 + -2.4
2,194,437 + -2.8
2,194,437 + -2.2
2,194,470 + +0.7

Or see this region's nucleotide sequence